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1.
Int J Food Microbiol ; 391-393: 110147, 2023 Apr 16.
Artigo em Inglês | MEDLINE | ID: mdl-36848797

RESUMO

AprX is an alkaline metalloprotease produced by Pseudomonas spp. and encoded by its initial gene of the aprX-lipA operon. The intrinsic diversity among Pseudomonas spp. regarding their proteolytic activity is the main challenge for the development of accurate methods for spoilage prediction of ultra-high temperature (UHT) treated milk in the dairy industry. In the present study, 56 Pseudomonas strains were characterized by assessing their proteolytic activity in milk before and after lab-scale UHT treatment. From these, 24 strains were selected based on their proteolytic activity for whole genome sequencing (WGS) to identify common genotypic characteristics that correlated with the observed variations in proteolytic activity. Four groups (A1, A2, B and N) were determined based on operon aprX-lipA sequence similarities. These alignment groups were observed to significantly influence the proteolytic activity of the strains, with an average proteolytic activity of A1 > A2 > B > N. The lab-scale UHT treatment did not significantly influence their proteolytic activity, indicating a high thermal stability of proteases among strains. Amino acid sequence variation of biologically-relevant motifs in the AprX sequence, namely the Zn2+-binding motif at the catalytic domain and the C-terminal type I secretion signaling mechanism, were found to be highly conserved within alignment groups. These motifs could serve as future potential genetic biomarkers for determination of alignment groups and thereby strain spoilage potential.


Assuntos
Pseudomonas fluorescens , Pseudomonas , Animais , Pseudomonas/genética , Peptídeo Hidrolases/metabolismo , Temperatura Alta , Endopeptidases/metabolismo , Leite/química
2.
Environ Sci Pollut Res Int ; 28(1): 1267-1274, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-33222068

RESUMO

Countries throughout the whole world, including China, are working together to curb the greenhouse effect, but the effects seem very limited in spite of the fact that various low-carbon development strategies have been adopted, particularly in industrial enterprises. Therefore, carbon emissions caused by the public should be taken seriously, and the public should be encouraged to engage in behavior that limits carbon emissions. Therefore, this article introduces a new incentive mechanism called the Carbon Generalized System of Preferences (CGSP), which was first introduced in Guangdong Province, China. It is believed that this new mechanism matches the role of leadership in Guangdong in the urbanization and economic development of China by addressing the small sources of greenhouse gases (GHGs) and by issuing carbon coins. Compared with Chinese Certified Emission Reduction (CCER), the development scope, management level, and novel criteria of CGSP are very different but relatively easy for the public to accept. The CGSP shows that the network platform, reduced carbon emissions, and urban pilots are all compatible with the goals of the nation and city, and they promote the CGSP in different ways. Because of its consistency with ecological civilization in China, the prospect of the CGSP is bright; however, there are some challenges, such as policy and economic factors, combined with pollution control.


Assuntos
Carbono , Desenvolvimento Econômico , Carbono/análise , Dióxido de Carbono/análise , China , Cidades , Urbanização
3.
Food Microbiol ; 79: 96-115, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30621881

RESUMO

Next Generation Sequencing (NGS) combined with powerful bioinformatic approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of single isolates allows the most detailed comparison possible hitherto of individual strains. The two principle approaches for strain discrimination, single nucleotide polymorphism (SNP) analysis and genomic multi-locus sequence typing (MLST) are showing concordant results for phylogenetic clustering and are complementary to each other. Metabarcoding and metagenomics, applied to total DNA isolated from either food materials or the production environment, allows the identification of complete microbial populations. Metagenomics identifies the entire gene content and when coupled to transcriptomics or proteomics, allows the identification of functional capacity and biochemical activity of microbial populations. The focus of this review is on the recent use and future potential of NGS in food microbiology and on current challenges. Guidance is provided for new users, such as public health departments and the food industry, on the implementation of NGS and how to critically interpret results and place them in a broader context. The review aims to promote the broader application of NGS technologies within the food industry as well as highlight knowledge gaps and novel applications of NGS with the aim of driving future research and increasing food safety outputs from its wider use.


Assuntos
Microbiologia de Alimentos/normas , Microbiologia de Alimentos/tendências , Inocuidade dos Alimentos , Sequenciamento de Nucleotídeos em Larga Escala , Biologia Computacional , Indústria Alimentícia/instrumentação , Indústria Alimentícia/normas , Indústria Alimentícia/tendências , Microbiologia de Alimentos/instrumentação , Genômica , Tipagem de Sequências Multilocus , Polimorfismo de Nucleotídeo Único , Guias de Prática Clínica como Assunto , Análise de Sequência de DNA
4.
J Tissue Eng Regen Med ; 11(1): 121-128, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-24700577

RESUMO

Recently, biomaterials-based tissue-engineering strategies, including the use of hydrogels, have offered great promise for repairing articular cartilage. Mechanical failure testing in outcome analyses is of crucial clinical importance to the success of engineered constructs. Interpenetrating networks (IPNs) are gaining more attention, due to their superior mechanical integrity. This study provided a combination testing method of apparent fracture toughness, which was applied to both articular cartilage and hydrogels. The apparent fracture toughnesses of two groups, hydrogels and articular cartilage, were evaluated based on the modified single-edge notch test and ASTM standards on the single-edge notch test and compact tension test. The results demonstrated that the toughness for articular cartilage (348 ± 43 MPa/mm½ ) was much higher than that for hydrogels. With a toughness value of 10.8 ± 1.4 MPa/mm½ , IPNs of agarose and poly(ethylene glycol) diacrylate (PEG-DA) looked promising. The IPNs were 1.4 times tougher than PEG-DA alone, although still over an order of magnitude less tough than cartilage. A new method was developed to evaluate hydrogels and cartilage in a manner that enabled a more relevant direct comparison for fracture testing of hydrogels for cartilage tissue engineering. Moreover, a target toughness value for cartilage of using this direct comparison method has been identified (348 ± 43 MPa/mm½ ), and the toughness discrepancy to be overcome between hydrogels and cartilage has been quantified. Copyright © 2014 John Wiley & Sons, Ltd.


Assuntos
Materiais Biocompatíveis/química , Cartilagem Articular/patologia , Polietilenoglicóis/química , Engenharia Tecidual/métodos , Animais , Sobrevivência Celular , Condrócitos , Hidrogéis/química , Masculino , Teste de Materiais , Sefarose/química , Suínos , Resistência à Tração
5.
Appl Environ Microbiol ; 83(4)2017 02 15.
Artigo em Inglês | MEDLINE | ID: mdl-27881417

RESUMO

Spore germination of 17 Bacillus cereus food isolates and reference strains was evaluated using flow cytometry analysis in combination with fluorescent staining at a single-spore level. This approach allowed for rapid collection of germination data under more than 20 conditions, including heat activation of spores, germination in complex media (brain heart infusion [BHI] and tryptone soy broth [TSB]), and exposure to saturating concentrations of single amino acids and the combination of alanine and inosine. Whole-genome sequence comparison revealed a total of 11 clusters of operons encoding germinant receptors (GRs): GerK, GerI, and GerL were present in all strains, whereas GerR, GerS, GerG, GerQ, GerX, GerF, GerW, and GerZ (sub)clusters showed a more diverse presence/absence in different strains. The spores of tested strains displayed high diversity with regard to their sensitivity and responsiveness to selected germinants and heat activation. The two laboratory strains, B. cereus ATCC 14579 and ATCC 10987, and 11 food isolates showed a good germination response under a range of conditions, whereas four other strains (B. cereus B4085, B4086, B4116, and B4153) belonging to phylogenetic group IIIA showed a very weak germination response even in BHI and TSB media. Germination responses could not be linked to specific (combinations of) GRs, but it was noted that the four group IIIA strains contained pseudogenes or variants of subunit C in their gerL cluster. Additionally, two of those strains (B4086 and B4153) carried pseudogenes in the gerK and gerRI (sub)clusters that possibly affected the functionality of these GRs. IMPORTANCE: Germination of bacterial spores is a critical step before vegetative growth can resume. Food products may contain nutrient germinants that trigger germination and outgrowth of Bacillus species spores, possibly leading to food spoilage or foodborne illness. Prediction of spore germination behavior is, however, very challenging, especially for spores of natural isolates that tend to show more diverse germination responses than laboratory strains. The approach used has provided information on the genetic diversity in GRs and corresponding subclusters encoded by B. cereus strains, as well as their germination behavior and possible associations with GRs, and it provides a basis for further extension of knowledge on the role of GRs in B. cereus (group member) ecology and transmission to the host.


Assuntos
Bacillus cereus/isolamento & purificação , Bacillus cereus/metabolismo , Esporos Bacterianos/crescimento & desenvolvimento , Bacillus cereus/genética , Endopeptidases/genética , Doenças Transmitidas por Alimentos/microbiologia , Genótipo , Temperatura Alta , Óperon/genética , Filogenia , Esporos Bacterianos/genética
6.
Annu Rev Food Sci Technol ; 7: 457-82, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26934174

RESUMO

Spore-forming bacteria are ubiquitous in nature. The resistance properties of bacterial spores lie at the heart of their widespread occurrence in food ingredients and foods. The efficacy of inactivation by food-processing conditions is largely determined by the characteristics of the different types of spores, whereas food composition and storage conditions determine the eventual germination and outgrowth of surviving spores. Here, we review the current knowledge on variation in spore resistance, in germination, and in the outgrowth capacity of spores relevant to foods. This includes novel findings on key parameters in spore survival and outgrowth obtained by gene-trait matching approaches using genome-sequenced Bacillus spp. food isolates, which represent notorious food spoilage and pathogenic species. Additionally, the impact of strain diversity on heat inactivation of spores and the variability therein is discussed. Knowledge and quantification of factors that influence variability can be applied to improve predictive models, ultimately supporting effective control of spore-forming bacteria in foods.


Assuntos
Microbiologia de Alimentos , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/fisiologia , Bacillus/genética , Bacillus/fisiologia , Manipulação de Alimentos/métodos , Temperatura Alta , Humanos , Especificidade da Espécie , Esporos Bacterianos/genética
7.
PLoS One ; 10(5): e0127036, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25978838

RESUMO

The formation of bacterial spores is a highly regulated process and the ultimate properties of the spores are determined during sporulation and subsequent maturation. A wide variety of genes that are expressed during sporulation determine spore properties such as resistance to heat and other adverse environmental conditions, dormancy and germination responses. In this study we characterized the sporulation phases of C. perfringens enterotoxic strain SM101 based on morphological characteristics, biomass accumulation (OD600), the total viable counts of cells plus spores, the viable count of heat resistant spores alone, the pH of the supernatant, enterotoxin production and dipicolinic acid accumulation. Subsequently, whole-genome expression profiling during key phases of the sporulation process was performed using DNA microarrays, and genes were clustered based on their time-course expression profiles during sporulation. The majority of previously characterized C. perfringens germination genes showed upregulated expression profiles in time during sporulation and belonged to two main clusters of genes. These clusters with up-regulated genes contained a large number of C. perfringens genes which are homologs of Bacillus genes with roles in sporulation and germination; this study therefore suggests that those homologs are functional in C. perfringens. A comprehensive homology search revealed that approximately half of the upregulated genes in the two clusters are conserved within a broad range of sporeforming Firmicutes. Another 30% of upregulated genes in the two clusters were found only in Clostridium species, while the remaining 20% appeared to be specific for C. perfringens. These newly identified genes may add to the repertoire of genes with roles in sporulation and determining spore properties including germination behavior. Their exact roles remain to be elucidated in future studies.


Assuntos
Clostridium perfringens/genética , Genes Bacterianos/genética , Genoma Bacteriano/genética , Esporos Bacterianos/genética , Clostridium perfringens/crescimento & desenvolvimento , Clostridium perfringens/fisiologia , Perfilação da Expressão Gênica , Genes Bacterianos/fisiologia , Genoma Bacteriano/fisiologia , Análise de Sequência com Séries de Oligonucleotídeos , RNA Bacteriano/genética , Reação em Cadeia da Polimerase em Tempo Real , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/fisiologia
8.
Int J Food Microbiol ; 194: 40-5, 2015 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-25461607

RESUMO

In the current study, the outgrowth of spores of 15 different food isolates of Clostridium perfringens was evaluated in vacuum-packed ground beef during storage at 12°C and 25°C. This included enterotoxic strains carrying the gene encoding the CPE enterotoxin on the chromosome (C-cpe), on a plasmid (P-cpe) and cpe-negative strains. The 15 strains were selected from a larger group of strains that were first evaluated for their ability to sporulate in modified Duncan-Strong sporulating medium. Sporulation ability varied greatly between strains but was not associated with a particular cpe genotype. In line with previous studies, the tested C-cpe strains produced spores with significantly higher heat resistance than the cpe-negative and P-cpe strains (both IS1151 and IS1470-like) with the exception of strain VWA009. Following inoculation of vacuum-packed cooked ground beef with spores, the heat-resistant C-cpe strains showed lower outgrowth potential in this model food stored at 12°C than the P-cpe and cpe-negative strains, while no significant differences were observed at 25°C. These results suggest that the latter strains may have a competitive advantage over C-cpe strains at reduced temperatures during storage of foods that support the growth of C. perfringens. While spores of P-cpe strains are readily inactivated by heat processing, post-processing contamination by food handlers who may carry P-cpe strains that have a better growth potential at lower temperatures must be avoided. The varying responses of C. perfringens spores to heat and the differences in outgrowth capacity at different temperatures are factors to be considered in strain selection for challenge tests, and for predictive modelling of C. perfringens.


Assuntos
Clostridium perfringens/crescimento & desenvolvimento , Temperatura Baixa , Enterotoxinas/genética , Manipulação de Alimentos/normas , Carne/microbiologia , Animais , Bovinos , Clostridium perfringens/genética , Genes Bacterianos/genética , Genótipo , Plasmídeos/genética , Esporos Bacterianos/crescimento & desenvolvimento , Vácuo
9.
Leuk Lymphoma ; 55(2): 378-91, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23566162

RESUMO

The disparate response of leukemia cells to chemotherapy in vivo, compared to in vitro, is partly related to the interaction of leukemic cells and the three-dimensional bone marrow stromal microenvironment. We investigated the effects of chemotherapy agents on leukemic cell lines co-cultured with human bone marrow mesenchymal stem cells (hu-BM-MSCs) in a three-dimensional model (3D). Comparison was made to leukemic cells treated in suspension, or grown on a hu-BM-MSC monolayer (2D conditions). We demonstrated that leukemic cells cultured in 3D were more resistant to drug-induced apoptosis compared to cells cultured in 2D or in suspension. We also demonstrated significant differences in leukemic cell response to chemotherapy using different leukemic cell lines cultured in 3D. We suggest that the differential responses to chemotherapy in 3D may be related to the expression of N-cadherin in the co-culture system. This unique model provides an opportunity to study leukemic cell responses to chemotherapy in 3D.


Assuntos
Antineoplásicos/farmacologia , Apoptose/efeitos dos fármacos , Técnicas de Cultura de Células/métodos , Modelos Biológicos , Células da Medula Óssea/citologia , Células da Medula Óssea/efeitos dos fármacos , Caderinas/metabolismo , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Células Cultivadas , Técnicas de Cocultura , Citarabina/farmacologia , Relação Dose-Resposta a Droga , Doxorrubicina/farmacologia , Citometria de Fluxo , Células HL-60 , Humanos , Imuno-Histoquímica , Antígeno Ki-67/metabolismo , Leucemia/tratamento farmacológico , Leucemia/metabolismo , Leucemia/patologia , Células-Tronco Mesenquimais/citologia , Células-Tronco Mesenquimais/efeitos dos fármacos , Células-Tronco Mesenquimais/metabolismo
10.
Blood Cells Mol Dis ; 52(1): 59-67, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23953010

RESUMO

Delayed engraftment and graft failure represent major obstacles to successful umbilical cord blood (UCB) transplantation. Herein, we evaluated the use of hyperbaric oxygen (HBO) therapy as an intervention to improve human UCB stem/progenitor cell engraftment in an immune deficient mouse model. Six- to eight-week old NSG mice were sublethally irradiated 24 hours prior to CD34⁺ UCB cell transplant. Irradiated mice were separated into a non-HBO group (where mice remained under normoxic conditions) and the HBO group (where mice received 2 hours of HBO therapy; 100% oxygen at 2.5 atmospheres absolute). Four hours after completing HBO therapy, both groups intravenously received CD34⁺ UCB cells that were transduced with a lentivirus carrying luciferase gene and expanded for in vivo imaging. Mice were imaged and then sacrificed at one of 10 times up to 4.5 months post-transplant. HBO treated mice demonstrated significantly improved bone marrow, peripheral blood, and spleen retention and subsequent engraftment. In addition, HBO significantly improved peripheral, spleen and bone marrow engraftment of human myeloid and B-cell subsets. In vivo imaging demonstrated that HBO mice had significantly higher ventral and dorsal bioluminescence values. These studies suggest that HBO treatment of NSG mice prior to UCB CD34⁺ cell infusion significantly improves engraftment.


Assuntos
Subpopulações de Linfócitos B/citologia , Transplante de Células-Tronco de Sangue do Cordão Umbilical , Rejeição de Enxerto/prevenção & controle , Sobrevivência de Enxerto , Oxigenoterapia Hiperbárica , Animais , Antígenos CD34/genética , Antígenos CD34/imunologia , Subpopulações de Linfócitos B/imunologia , Células da Medula Óssea/citologia , Células da Medula Óssea/imunologia , Feminino , Expressão Gênica , Genes Reporter , Rejeição de Enxerto/imunologia , Humanos , Injeções Intravenosas , Luciferases/genética , Luciferases/metabolismo , Camundongos , Camundongos Endogâmicos , Baço/citologia , Baço/imunologia , Transplante Heterólogo , Irradiação Corporal Total
11.
Tissue Eng Part B Rev ; 19(5): 403-12, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23448091

RESUMO

Injuries to articular cartilage result in significant pain to patients and high medical costs. Unfortunately, cartilage repair strategies have been notoriously unreliable and/or complex. Biomaterial-based tissue-engineering strategies offer great promise, including the use of hydrogels to regenerate articular cartilage. Mechanical integrity is arguably the most important functional outcome of engineered cartilage, although mechanical testing of hydrogel-based constructs to date has focused primarily on deformation rather than failure properties. In addition to deformation testing, as the field of cartilage tissue engineering matures, this community will benefit from the addition of mechanical failure testing to outcome analyses, given the crucial clinical importance of the success of engineered constructs. However, there is a tremendous disparity in the methods used to evaluate mechanical failure of hydrogels and articular cartilage. In an effort to bridge the gap in mechanical testing methods of articular cartilage and hydrogels in cartilage regeneration, this review classifies the different toughness measurements for each. The urgency for identifying the common ground between these two disparate fields is high, as mechanical failure is ready to stand alongside stiffness as a functional design requirement. In comparing toughness measurement methods between hydrogels and cartilage, we recommend that the best option for evaluating mechanical failure of hydrogel-based constructs for cartilage tissue engineering may be tensile testing based on the single edge notch test, in part because specimen preparation is more straightforward and a related American Society for Testing and Materials (ASTM) standard can be adopted in a fracture mechanics context.


Assuntos
Cartilagem Articular , Hidrogéis , Teste de Materiais/métodos , Engenharia Tecidual/métodos , Alicerces Teciduais , Animais , Humanos , Teste de Materiais/normas , Regeneração , Medicina Regenerativa/instrumentação , Medicina Regenerativa/métodos , Engenharia Tecidual/normas
12.
Stem Cells Dev ; 22(1): 18-26, 2013 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-22970796

RESUMO

Wharton's jelly mesenchymal stromal cells (WJMSCs) are considered mesenchymal, multipotent, and capable of differentiating into cells of mesodermal origin. Ectodermal differentiation from mesenchymal cells has been recently reported. Herein, we show for the first time that we can generate cytokeratin 19-positive cells and hair-like structures from WJMSCs in vitro using 2 separate methodologies that utilize osteogenic media to induce WJMSCs to undergo osteogenic differentiation. In one method, WJMSCs were seeded on a matrix isolated from Wharton's jelly following decellularization. In the other method, WJMSCs were cultured to form spheroids. Our findings demonstrate that WJMSCs may have the capacity for ectodermal differentiation.


Assuntos
Queratina-19/metabolismo , Células-Tronco Mesenquimais/fisiologia , Geleia de Wharton/citologia , Técnicas de Cultura de Células , Diferenciação Celular , Extensões da Superfície Celular/fisiologia , Células Cultivadas , Meios de Cultura , Ectoderma/citologia , Ectoderma/fisiologia , Humanos , Queratina-15/metabolismo , Células-Tronco Mesenquimais/metabolismo , Osteogênese , Fenótipo , Esferoides Celulares/metabolismo , Esferoides Celulares/fisiologia
13.
Appl Environ Microbiol ; 78(19): 7060-8, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22865060

RESUMO

Of 98 suspected food-borne Clostridium perfringens isolates obtained from a nationwide survey by the Food and Consumer Product Safety Authority in The Netherlands, 59 strains were identified as C. perfringens type A. Using PCR-based techniques, the cpe gene encoding enterotoxin was detected in eight isolates, showing a chromosomal location for seven isolates and a plasmid location for one isolate. Further characterization of these strains by using (GTG)(5) fingerprint repetitive sequence-based PCR analysis distinguished C. perfringens from other sulfite-reducing clostridia but did not allow for differentiation between various types of C. perfringens strains. To characterize the C. perfringens strains further, multilocus sequence typing (MLST) analysis was performed on eight housekeeping genes of both enterotoxic and non-cpe isolates, and the data were combined with a previous global survey covering strains associated with food poisoning, gas gangrene, and isolates from food or healthy individuals. This revealed that the chromosomal cpe strains (food strains and isolates from food poisoning cases) belong to a distinct cluster that is significantly distant from all the other cpe plasmid-carrying and cpe-negative strains. These results suggest that different groups of C. perfringens have undergone niche specialization and that a distinct group of food isolates has specific core genome sequences. Such findings have epidemiological and evolutionary significance. Better understanding of the origin and reservoir of enterotoxic C. perfringens may allow for improved control of this organism in foods.


Assuntos
Clostridium perfringens/classificação , Clostridium perfringens/genética , Microbiologia de Alimentos , Tipagem de Sequências Multilocus , Cromossomos Bacterianos , Clostridium perfringens/isolamento & purificação , Análise por Conglomerados , Impressões Digitais de DNA , DNA Bacteriano/química , DNA Bacteriano/genética , Enterotoxinas/genética , Genótipo , Dados de Sequência Molecular , Países Baixos , Plasmídeos
14.
Food Microbiol ; 28(2): 266-74, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21315983

RESUMO

Bacilli and clostridia share the characteristic of forming metabolically inactive endospores. Spores are highly resistant to adverse environmental conditions including heat, and their ubiquitous presence in nature makes them inevitable contaminants of foods and food ingredients. Spores can germinate under favourable conditions, and the following outgrowth can lead to food spoilage and foodborne illness. Germination of spores has been best studied in Bacillus species, but the process of spore germination is less well understood in anaerobic clostridia. This paper describes a genome mining approach focusing on the genes related to spore germination of clostridia. To this end, 12 representative sequenced Bacillus genomes and 24 Clostridium genomes were analyzed for the distribution of known and putative germination-related genes and their homologues. Overall, the number of ger operons encoding germinant receptors is lower in clostridia than in bacilli, and some Clostridium species are predicted to produce cortex-lytic enzymes that are different from the ones encountered in bacilli. The in silico germination model constructed for clostridia was linked to recently obtained experimental data for selected germination determinants, mainly in Clostridium perfringens. Similarities and differences between germination mechanisms of bacilli and clostridia will be discussed.


Assuntos
Bacillus/fisiologia , Clostridium/fisiologia , Contaminação de Alimentos/análise , Qualidade de Produtos para o Consumidor , Microbiologia de Alimentos , Regulação Bacteriana da Expressão Gênica/genética , Regulação Bacteriana da Expressão Gênica/fisiologia , Genoma Bacteriano , Humanos , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/metabolismo
15.
Genome ; 49(7): 735-45, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16936782

RESUMO

A novel y-type high molecular mass glutenin subunit (HMM-GS) possessing a mobility that is slightly slower than that of the subunit Dy10 obtained by SDS-PAGE, named Dy10.1t, in the wild wheat Aegilops tauschii was identified by 1- and 2-dimensional gel electrophoresis, capillary electrophoresis, and matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF-MS). The gene encoding the HMM subunit Dy10.1t was amplified with allele-specific PCR primers, and the amplified products were cloned and sequenced. The coding domain of the Dy10.1t subunit gene consisted of 1980 bp encoding a protein of 658 residues with an M rs of 68 611 Da, which was similar to the M rs determined by MALDI-TOF-MS. The deduced amino acid sequence indicated that Dy10.1t subunit displayed a greater similarity to the Dy12 subunit, differing by only 8 amino acid substitutions. Six coding region single-nucleotide polymorphisms were discovered in the Dy10.1t gene by multiple alignments (1 per 330 bp), 1 in the N-terminal domain and the others in the central repeats. Five of them resulted in residue substitutions, whereas 3 created enzyme site changes. The homology and neighbour-joining trees constructed from code domain sequences of 20 x- and y-type glutenin genes from different Triticum species separated into 2 halves, which corresponded to the x-type and y-type HMM glutenin alleles. Phylogenetic analysis revealed that the Glu-1 gene duplication event probably occurred at about 16.83 million years ago, whereas the divergence times of A, B, and D genomes within x-type and y-type halves were before 7.047 and 10.54 million years ago, respectively.


Assuntos
DNA de Plantas/genética , Glutens/genética , Triticum/genética , Alelos , Sequência de Aminoácidos , Clonagem Molecular , DNA de Plantas/isolamento & purificação , Eletroforese em Gel de Poliacrilamida , Técnicas Genéticas , Glutens/isolamento & purificação , Dados de Sequência Molecular , Filogenia , Subunidades Proteicas/genética , Subunidades Proteicas/isolamento & purificação , Alinhamento de Sequência , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
16.
Science ; 306(5693): 104-7, 2004 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-15459389

RESUMO

Large RNA molecules, such as ribozymes, fold with well-defined tertiary structures that are important for their activity. There are many instances of ribozymes with identical function but differences in their secondary structures, suggesting alternative tertiary folds. Here, we report a crystal structure of the 161-nucleotide specificity domain of an A-type ribonuclease P that differs in secondary and tertiary structure from the specificity domain of a B-type molecule. Despite the differences, the cores of the domains have similar three-dimensional structure. Remarkably, the similar geometry of the cores is stabilized by a different set of interactions involving distinct auxiliary elements.


Assuntos
RNA Bacteriano/química , Ribonuclease P/química , Thermus thermophilus/química , Sequência de Bases , Domínio Catalítico , Sequência Conservada , Cristalografia por Raios X , Ligação de Hidrogênio , Modelos Moleculares , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Filogenia , Precursores de RNA/química , Precursores de RNA/metabolismo , RNA Bacteriano/metabolismo , RNA de Transferência/química , RNA de Transferência/metabolismo , Ribonuclease P/metabolismo , Ribonucleotídeos/química , Ribonucleotídeos/metabolismo , Thermus thermophilus/enzimologia
17.
Hereditas ; 141(1): 46-54, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15383071

RESUMO

Cultivated emmer (Triticum dicoccum, 2n = 4x = 28, AABB) is closely related to bread wheat and possesses extensive allelic variations in high molecular weight glutenin subunit (HMW-GS) composition. These alleles may be an important genetic resource for wheat quality improvement. To isolate and clone HMW-GS genes from cultivated emmer, two pairs of allele-specific (AS) PCR primers were designed to amplify the coding sequence of y-type HMW-GS genes and their upstream sequences, respectively. The results showed that single bands of strong amplification were obtained through AS-PCR of genomic DNA from emmer. After cloning and sequencing the complete sequence of coding and 5'-flanking regions of a y-type subunit gene at Glu-A1 locus was obtained. Nucleotide and deduced amino acid sequences analysis showed that this gene possessed a similar structure as the previously reported Ay gene from common wheat, and is hence designated as Ay1d. The distinct feature of the Ay1d gene is that its coding region contains four stop codons and its upstream region has a 85-bp deletion in the same position of the Ay gene, which are probably responsible for the silencing of y-type subunit genes at Glu-A1 locus. Phylogenetic analysis of HMW glutenin subunit genes from different Triticum species and genomes were also carried out.


Assuntos
Glutens/análogos & derivados , Glutens/genética , Triticum/genética , Sequência de Aminoácidos , Sequência de Bases , Clonagem Molecular , DNA de Plantas/genética , Genes de Plantas , Glutens/química , Dados de Sequência Molecular , Peso Molecular , Filogenia , Reação em Cadeia da Polimerase , Subunidades Proteicas , Homologia de Sequência do Ácido Nucleico
18.
Yi Chuan ; 25(4): 471-4, 2003 Jul.
Artigo em Chinês | MEDLINE | ID: mdl-15639911

RESUMO

Activation tagging is a new method for isolation and functional identification. It can generate dominant gain-of-function mutants by overexpression of a particular endogenous gene. Due to this special characteristics of activation tagging,this method has been a powerful tool for new gene discovery and gene functional analysis. This paper reviewed the principle and study conditions of activation tagging,as well as its use in plant genetic engineering.

19.
Biochim Biophys Acta ; 1588(1): 48-55, 2002 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-12379313

RESUMO

Lithocholic acid (LA) conjugates interact with M3 receptors, the muscarinic receptor subtype that modulates colon cancer cell proliferation. This observation prompted us to examine the action of bile acids on two human colon cancer cell lines: H508, which expresses M3 receptors, and SNU-C4, which does not. Cellular proliferation was determined using a colorimetric assay. Interaction with muscarinic receptors was determined by measuring inhibition of muscarinic radioligand binding and changes in cellular inositol phosphate (IP) formation. Lithocholyltaurine (LCT) caused a dose-dependent increase in H508 cell proliferation that was not observed in SNU-C4 cells. After a 6-day incubation with 300 microM LCT, H508 cell proliferation increased by 200% compared to control. Moreover, in H508 cells, LCT caused a dose-dependent inhibition of radioligand binding and an increase in IP formation. LCT did not alter the rate of apoptosis in H508 or SNU-C4 cells. These data indicate that, at concentrations achievable in the gut, LA derivatives interact with M3 muscarinic receptors on H508 human colon cancer cells, thereby causing an increase in IP formation and cell proliferation. This suggests a mechanism whereby alterations in intestinal bile acids may affect the growth of colon cancer cells.


Assuntos
Ácido Litocólico/metabolismo , Receptores Muscarínicos/metabolismo , Acetilcolina/farmacologia , Apoptose/efeitos dos fármacos , Carbacol/farmacologia , Divisão Celular/efeitos dos fármacos , Neoplasias do Colo/prevenção & controle , Relação Dose-Resposta a Droga , Humanos , Fosfatos de Inositol/biossíntese , Ácido Litocólico/química , Ensaio Radioligante , Receptor Muscarínico M3 , Receptores Muscarínicos/química , Ácido Taurolitocólico/farmacologia , Células Tumorais Cultivadas
20.
Alcohol Clin Exp Res ; 26(3): 363-70, 2002 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11923590

RESUMO

BACKGROUND: Clinical and experimental studies have shown that an important deleterious consequence of excessive alcohol consumption is immunosuppression, specifically, a depletion in the mature CD4+ T-cell population. A predominant mechanism involved in T-cell depletion is activation-induced cell death (AICD). Although it is well documented that ethanol intake can cause depletion of CD4+ T cells, the mechanism of how alcohol mediates its effects is unclear. METHODS: The results were based on data from three separate experiments presented as mean +/- standard deviation (SD). Jurkat CD4+ T cells and peripheral blood lymphocytes were treated with 25 mM of ethanol (12-18 hr), followed by stimulation with mitogens Conconavalin A (5 microg/ml) and Phytohemmaglutinin (1 microg/ml) or T-cell receptor ligation (anti-CD3 antibody (5 microg/ml)) for 6 hr, and then harvested for measurement. The apoptotic cell death markers measured include cell viability, Caspase-3-like activity, and DNA fragmentation. RESULTS: We demonstrate that alcohol pretreatment enhances AICD of Jurkat CD4+ T cells and peripheral blood lymphocytes upon activation by CD3-crosslinking or stimulation with Conconavalin A and Phytohemmaglutinin. Furthermore, we find that the ethanol-mediated enhancement of T cells to apoptosis involves increased activation of Caspase-3 and can be abrogated by treatment with a specific inhibitor of Caspase-3. CONCLUSIONS: Our data indicate that ethanol can sensitize CD4+ T cells to enhanced stimulation-induced Caspase-3 activation and to subsequent AICD. This is, perhaps, an important mechanism in alcohol-induced immunosuppression.


Assuntos
Caspases/biossíntese , Caspases/fisiologia , Depressores do Sistema Nervoso Central/farmacologia , Etanol/farmacologia , Imunossupressores/farmacologia , Linfócitos T/citologia , Linfócitos T/efeitos dos fármacos , Caspase 3 , Morte Celular/efeitos dos fármacos , Morte Celular/fisiologia , Ativação Enzimática/efeitos dos fármacos , Ativação Enzimática/fisiologia , Humanos , Células Jurkat/citologia , Células Jurkat/efeitos dos fármacos , Células Jurkat/enzimologia , Linfócitos T/enzimologia
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