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1.
iScience ; 27(3): 109229, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38455977

RESUMO

Current studies on the immune microenvironment of colorectal cancer (CRC) were mostly limited to the tissue level, lacking relevant studies in the peripheral blood, and failed to describe its alterations in the whole process of adenocarcinoma formation, especially of adenoma carcinogenesis. Here, we constructed a large-scale population cohort and used the CyTOF to explore the changes of various immune cell subsets in peripheral blood of CRC. We found monocytes and basophils cells were significantly higher in adenocarcinoma patients. Compared with early-stage CRC, effector CD4+T cells and naive B cells were higher in patients with lymph node metastasis, whereas the basophils were lower. We also performed random forest algorithm and found monocytes play the key role in carcinogenesis. Our study draws a peripheral blood immune cell landscape of the occurrence and development of CRC at the single-cell level and provides a reference for other researchers.

3.
Biodivers Data J ; 12: e116267, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38379669

RESUMO

The faunal composition, host relationships and biological information of the subfamily Cassidinae (Coleoptera, Chrysomelidae) remain poorly known in many Chinese regions. Based on the seven-year field survey, faunal composition and host associations of Cassidinae beetles were systematically compiled for Qiannan Buyi and Miao Autonomous Prefecture, Guizhou Province. In particular, through direct field observations, detailed biological information, such as life history and behavioural features and host plants were first recorded for 56 species of Cassidinae beetles. We have tripled the number of Cassidinae species in Qiannan. Sixty-nine species of Cassidinae beetles belonging to 17 genera and eight tribes were identified, of which 38 species are newly recorded in Guizhou and 56 are newly recorded in Qiannan. The tribes Leptispini and Notosacanthini were newly recorded in Guizhou. The genera Thlaspidosoma Spaeth, Downesia Baly, Klitispa Uhmann, Platypria Guérin-Méneville, Leptispa Baly and Notosacantha Chevrolat were recorded in Guizhou for the first time. A total of 61 species, 37 genera and 17 families of host plants were collected. Lardizabalaceae and Araliaceae were new host plant families for Cassidinae worldwide. Quantitative food web analysis indicated that Cassidinae species in Qiannan mainly feed on Poaceae, Rosaceae, Convolvulaceae and Lamiaceae. Callispini and Leptispini only feed on monocots, Aspidimorphini, Basiprionotini, Cassidini and Notosacanthini only feed on dicots, while Hispini feed on both monocots and dicots. The feeding patterns and corresponding damage marks of Cassidinae were quite diverse. In addition, the pupal mine-making behaviour of Dactylispaexcisa (Kraatz, 1879), D.similis Chen et T'an, 1985 and D.uhmanni Gressitt, 1950 are worth further study. Although preliminary, our field survey is an essential step in understanding Cassidinae behaviour and Cassidinae-plant interactions.

4.
J Org Chem ; 88(17): 12276-12288, 2023 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-37590088

RESUMO

Organohydrides are an important class of organic compounds that can provide hydride anions for chemical and biochemical reactions, as demonstrated by reduced nicotinamide adenine dinucleotides serving as important natural redox cofactors. The coupling of hydride transfer from the organohydride to the substrate and subsequent regeneration of the organohydride from its oxidized form can realize organohydride-catalyzed reduction reactions. Depending on the structure of the organohydride, its hydridicity and ease of regeneration vary. Benzimidazoline (BIH) is one of the strongest synthetic C-H hydride donors; however, its reductive regeneration requires highly reducing conditions. In this study, we synthesized various oxidized and reduced forms of BIH derivatives with aryl groups at the 2-position and investigated their photophysical and electrochemical properties. 4-(Dimethylamino)phenyl-substituted BIH exhibited salient red-shifted absorption compared with other synthesized BIH derivatives, and visible-light-driven regeneration without using an external photosensitizer was achieved. This knowledge has significant implications for the future development of solar-energy-based catalytic photoreduction technologies that utilize organohydride regeneration strategies.

5.
Biodivers Data J ; 11: e107523, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37559909

RESUMO

Few systematic studies have been conducted on the faunal composition and food web structure of Cassidinae of China. During 2013-2019, we systematically investigated Cassidinae beetles and their host plants in the southern Guangxi. A total of 2,255 Cassidinae individuals from 66 species, 23 genera and ten tribes were collected in southern Guangxi. Most species belonged to the tribe Hispini (23 species, 34.8%), followed by the tribe Gonophorini (13 species, 19.7%), Cassidini (eight species, 12.1%) and Aspidimorphini (six species, 9.1%). The others (16 species) belonged to the tribes Anisoderini, Botryonopini, Callispini, Oncocephalini, Notosacanthini and Leptispini. The tribe Notosacanthini was recorded from Guangxi for the first time. The genera Neownesia (Botryonopini), Gonophora (Gonophorini), Micrispa (Gonophorini), Notosacantha (Notosacanthini) and Prionispa (Oncocephalini) were firstly recorded in Guangxi. In total, we obtained 47 newly-recorded species in southern Guangxi and 33 newly-recorded species in the whole Guangxi, of which, Callispafrontalis Medvedev, 1992 was newly recorded in China. Dactylispafeae Gestro (625 individuals) and D.chinensis Weise (565 individuals) were the most common species. A total of 69 species, 53 genera and 19 families of host plants were identified for Cassidinae in southern Guangxi. Many host plant associations are new records for Cassidinae. Quantitative food web analysis indicated that Cassidinae species in southern Guangxi primarily fed on Poaceae, Convolvulaceae, Cyperaceae and Rosaceae. Generally, the plant-Cassidinae food webs were moderately complex and stable in southern Guangxi. This is the first large contribution to the knowledge of the species composition and host plant diversity of Cassidinae in southern Guangxi.

6.
Nat Chem ; 15(6): 794-802, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-36959509

RESUMO

Increasing levels of CO2 in the atmosphere is a problem that must be urgently resolved if the rise in current global temperatures is to be slowed. Chemically reducing CO2 into compounds that are useful as energy sources and carbon-based materials could be helpful in this regard. However, for the CO2 reduction reaction (CO2RR) to be operational on a global scale, the catalyst system must: use only renewable energy, be built from abundantly available elements and not require high-energy reactants. Although light is an attractive renewable energy source, most existing CO2RR methods use electricity and many of the catalysts used are based on rare heavy metals. Here we present a transition-metal-free catalyst system that uses an organohydride catalyst based on benzimidazoline for the CO2RR that can be regenerated using a carbazole photosensitizer and visible light. The system is capable of producing formate with a turnover number exceeding 8,000 and generates no other reduced products (such as H2 and CO).

7.
Zootaxa ; 5333(1): 1-131, 2023 Aug 18.
Artigo em Inglês | MEDLINE | ID: mdl-38221115

RESUMO

For the first time, genera of leaf mining Tischeriidae of the global fauna are reviewed and four new genera are described: Coptotrichoides Dikus & Stonis, gen. nov., trophically associated with Sapindaceae from Central and South America; Rytietia Dikus, Xu & Dai, gen. nov., trophically associated with Annonaceae from East and South East Asia; Pafazaria Dikus & Stonis, gen. nov., trophically associated with Fabaceae and Malvaceae from East and South East Asia; and Gnathitischeria Dikus, gen. nov., trophically associated with Malvaceae and Asteraceae from Central America. In addition to the descriptions of new genera, all previously described genera (Coptotriche Walsingham, 1890; Dishkeya Stonis, 2020; Tischeria Zeller, 1839; Manitischeria Dikus & Stonis, 2021; Neotischeria Dikus & Stonis, 2021; Paratischeria Dikus & Stonis, 2017; and Astrotischeria Puplesis & Dikus, 2003) are characterized and a pictorial identification key for all 11 genera is provided. Morphological and biological characteristics of all genera are supplemented with some molecular data. We described 12 new species: South East Asian Coptotriche sapaensis Dikus & Stonis, sp. nov.; Central American Coptotrichoides sapindoidum Dikus & Stonis, sp. nov. and Tischeria neokristenseni Dikus & Stonis, sp. nov.; South East Asian Rytietia uncinata Dikus, Xu & Dai, sp. nov., East Asian R. chongyiensis Xu & Dai, sp. nov.; South East Asian Pafazaria capitata Dikus & Stonis, sp. nov. and P. faboidica Dikus & Stonis, sp. nov.; Central American Neotischeria antigua Dikus & Remeikis, sp. nov. and N. subantigua Dikus & Remeikis, sp. nov.; South American Astrotischeria incae Dikus & Stonis, sp. nov.; and Central American Gnathitischeria atitlani Dikus & Stonis, sp. nov. and G. arcana Dikus & Stonis, sp. nov. The taxonomic rank of the East Asian subspecies Tischeria decidua siorkionla Kozlov, 1986 is elevated to species rank: T. siorkionla Kozlov (stat. nov.). The male genitalia of holotypes, paratypes, lectotypes or paralectotypes, or non-type specimens of some little-known species are examined for the first time. We provide the first morphological documentation for the following: Tischeria ceanothi lectotype and paralectotype; T. immaculata (stat. restored) paratype; Coptotrichoides deliquescens (Meyrick) lectotype and paralectotype; lectotypes of Coptotriche aenea (Frey & Boll), Astrotischeria plagifera (Meyrick), A. helianthi (Frey & Boll), and A. ephaptis (Meyrick); Coptotriche berberella (De Prins) paratype; and the first photographic documentation of Tischeria lvoskyi Kozlov holotype. Some non-type specimens deposited at NHMUK, including a few previously neglected species, are also examined and documented, including the American Astrotischeria solidagonifoliella (Clemens) and A. omissa (Braun). Nine new combinations are provided: Coptotrichoides deliquescens (Meyrick, 1915), comb. nov.; C. singularis (Stonis & Dikus) comb. nov.; C. suprafasciata (Dikus & Stonis) comb. nov., C. serjaniphaga (Remeikis & Stonis) comb. nov.; C. braziliensis (Dikus & Stonis) comb. nov.; Pafazaria jingdongensis (Xu & Dai), comb. nov.; Neotischeria explosa (Braun) comb. nov.; N. pallidipennella (Braun) comb. nov.; and Astrotischeria heteroterae (Frey & Boll) comb. nov. The synonymization of Tischeria longeciliata Frey & Boll, 1878 with Astrotischeria helianthi (Frey & Boll, 1878) is confirmed. One new species group, the Tischeria ceanothi group, is established. We also report a new distribution record of T. dodonaea Stainton from the Caucasus, Armenia. Three tables and 569 figures of adult external morphology, male and female genitalia, leaf mines, and cladograms based on molecular characters are provided.


Assuntos
Asteraceae , Lepidópteros , Mariposas , Masculino , Feminino , Animais , Distribuição Animal
8.
Biodivers Data J ; 11: e98405, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-38327338

RESUMO

Background: The genus Cantonius Théry, 1929 is a small group with two subgenera and 12 species. However, the biology of this genus is still unknown. New information: In this paper, three species of the genus Cantonius Théry, 1929 were found on bamboo leaves, revealing for the first time that Cantonius species are also leaf-miners. Two new species were recorded from Jiangxi Province and are described here: Cantonius (Cantonius) anjiensis sp. n. (host plant: Pleioblastusamarus) and Cantonius (Procantonius) qiyunensis sp. n. (host plant: Bambusablumeana) followed by C. (P.) austrisinicus Kalashian, 2021 (host plant: Oligostachyumpaniculatum) recorded from Guangxi Province. Including habitats, photos of three species together with C. (P.) qiyunensis sp. n. pupa, host plants, and leaf mines of the three species are presented. Moreover, the bionomics and habits of the genus are discussed for the first time, and a hypothesis for the distribution of Cantonius is provided.

9.
Zootaxa ; 5357(1): 100-120, 2023 Oct 17.
Artigo em Inglês | MEDLINE | ID: mdl-38220653

RESUMO

So far, only five species of the genus Lyonetia Hbner, 1825 have been recorded in China. In this paper, we describe two new species: L. (Lyonetiola) blasta T. Liu, sp. n., and L. (Lyonetiola) duplistriata T. Liu, sp. n., and report a newly recorded species, L. (Lyonetia) ledi Wocke, 1859 from China. Autumnal forms, manifesting darker forewings, of L. (Lyonetia) clerkella (Linnaeus, 1758) were collected from Xizang at an altitude of 3650 m in summer. The distribution and host plants of L. (Lyonetia) clerkella (Linnaeus, 1758) and L. (Lyonetia) prunifoliella (Hbner, 1796) in China are summarized. Photos of adults, male and female genitalia are provided. Host plants, leaf mines and DNA barcodes are also provided when available.


Assuntos
Lepidópteros , Mariposas , Feminino , Animais , China , Plantas , Genitália , Distribuição Animal
10.
Genes Dis ; 9(3): 682-696, 2022 May.
Artigo em Inglês | MEDLINE | ID: mdl-35782982

RESUMO

Ischemic stroke resulting from atherosclerosis (particularly in the carotid artery) is one of the major subtypes of stroke and has a high incidence of death. Disordered lipid homeostasis, lipid deposition, local macrophage infiltration, smooth muscle cell proliferation, and plaque rupture are the main pathological processes of atherosclerotic ischemic stroke. Hepatocytes, macrophages, endothelial cells and vascular smooth muscle cells are the main cell types participating in these processes. By inhibiting the expression of the target genes in these cells, microRNAs play a key role in regulating lipid disorders and atherosclerotic ischemic stroke. In this article, we listed the microRNAs implicated in the pathology of atherosclerotic ischemic stroke and aimed to explain their pro- or antiatherosclerotic roles. Our article provides an update on the potential diagnostic use of miRNAs for detecting growing plaques and impending clinical events. Finally, we provide a perspective on the therapeutic use of local microRNA delivery and discuss the challenges for this potential therapy.

11.
Mikrochim Acta ; 189(6): 215, 2022 05 07.
Artigo em Inglês | MEDLINE | ID: mdl-35524922

RESUMO

Magnetic molecularly imprinted nanoparticles (MMINPs) were obtained with a one-step process through miniemulsion self-assembly using an amphiphilic random copolymer as both an emulsifier and MMINP coating, oleic acid-modified magnetite nanoparticles as magnetic cores, and melamine (MEL) as the template molecule. MMINPs were assembled under an external magnetic field to construct photonic crystal (PC) sensor for naked-eye detection of MEL. The MMINPs were characterized by FT-IR, TEM, TGA, and VSM. The analytical performances of the magnetic molecularly imprinted PC sensor for MEL (MEL-MMIPCs) were investigated with respect to sensitivity, response time, selectivity, and stability. As the MEL concentration increases from 1.0 to 1.0 × 106 µg/l, the reflection wavelength of MEL-MMIPCs shifted from 497 to 709 nm, and was linear with the logarithm of MEL concentration in this range. The detection limit was 0.21 µg/l (S/N = 3) and response time was within 30 s. The MEL-MMIPC sensor had an imprinting factor of 5.09, and selectivity factors for the analogs cyanuric acid and atrazine were 8.76 and 5.75, respectively, indicating the high sensitivity and selectivity. After 10 cycles of elution/response, MEL-MMIPCs still had a good ability to recognize MEL.


Assuntos
Nanopartículas de Magnetita , Impressão Molecular , Fenômenos Magnéticos , Polímeros/química , Espectroscopia de Infravermelho com Transformada de Fourier , Triazinas
13.
Int J Comput Assist Radiol Surg ; 17(5): 857-865, 2022 May.
Artigo em Inglês | MEDLINE | ID: mdl-35294715

RESUMO

PURPOSE: Bronchoscopic intervention is a widely used clinical technique for pulmonary diseases, which requires an accurate and topological complete airway map for its localization and guidance. The airway map could be extracted from chest computed tomography (CT) scans automatically by airway segmentation methods. Due to the complex tree-like structure of the airway, preserving its topology completeness while maintaining the segmentation accuracy is a challenging task. METHODS: In this paper, a long-term slice propagation (LTSP) method is proposed for accurate airway segmentation from pathological CT scans. We also design a two-stage end-to-end segmentation framework utilizing the LTSP method in the decoding process. Stage 1 is used to generate a coarse feature map by an encoder-decoder architecture. Stage 2 is to adopt the proposed LTSP method for exploiting the continuity information and enhancing the weak airway features in the coarse feature map. The final segmentation result is predicted from the refined feature map. RESULTS: Extensive experiments were conducted to evaluate the performance of the proposed method on 70 clinical CT scans. The results demonstrate the considerable improvements of the proposed method compared to some state-of-the-art methods as most breakages are eliminated and more tiny bronchi are detected. The ablation studies further confirm the effectiveness of the constituents of the proposed method and the efficacy of the framework design. CONCLUSION: Slice continuity information is beneficial to accurate airway segmentation. Furthermore, by propagating the long-term slice feature, the airway topology connectivity is preserved with overall segmentation accuracy maintained.


Assuntos
Pneumopatias , Tórax , Brônquios , Humanos , Processamento de Imagem Assistida por Computador/métodos , Tomografia Computadorizada por Raios X/métodos
14.
Insects ; 14(1)2022 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-36661936

RESUMO

The species composition and diversity pattern of leaf miners on dominant trees in China are poorly understood. Using Hill-based diversity metrics, the elevational patterns of taxonomic, phylogenetic, and functional diversity for leaf miners on Quercus variabilis Blume at Baotianman were systematically analyzed. Leaf mine types belonged to ten genera and seven families. Different leaf miners had different elevational preferences. Most taxonomic and phylogenetic Hill diversity indices had typical hump-shaped elevational patterns, with a peak at the middle elevation of approximately 875 m. No functional Hill diversity indices presented significant linear or nonlinear trends with altitude. The driving factors behind the elevational distribution patterns of leaf miners require further work.

15.
Insects ; 12(11)2021 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-34821805

RESUMO

The taxonomic classification of Dactylispa, a large genus of leaf-mining beetles, is problematic because it is currently based on morphology alone. Here, the first eight mitochondrial genomes of Dactylispa species, which were used to construct the first molecular phylogenies of this genus, are reported. The lengths of the eight mitogenomes range from 17,189 bp to 20,363 bp. All of the mitochondrial genomes include 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), and 1 A + T-rich region. According to the nonsynonymous/synonymous mutation ratio (Ka/Ks) of all PCGs, the highest and the lowest evolutionary rates were found for atp8 and cox1, respectively, which is a common phenomenon among animals. According to relative synonymous codon usage, UUA(L) has the highest frequency. With two Gonophorini species as the outgroup, mitogenome-based phylogenetic trees of the eight Dactylispa species were constructed using maximum likelihood (ML) and Bayesian inference (BI) methods based on the PCGs, tRNAs, and rRNAs. Two DNA-based phylogenomic inferences and one protein-based phylogenomic inference support the delimitation of the subgenera Dactylispa s. str. and Platypriella as proposed in the system of Chen et al. (1986). However, the subgenus Triplispa is not recovered as monophyletic. The placement of Triplispa species requires further verification and testing with more species. We also found that both adult body shape and host plant relationship might explain the subgeneric relationships among Dactylispa beetles to a certain degree.

16.
Zootaxa ; 5071(1): 76-96, 2021 Nov 22.
Artigo em Inglês | MEDLINE | ID: mdl-34810680

RESUMO

The article describes three new species of Coptotriche Walsingham, 1890 from China and adjacent northern Vietnam: C. camptotheca Xu Dai, sp. nov. feeding on Camptotheca acuminata Decne. (Nyssaceae); C. turpinia Xu Dai, sp. nov. feeding on Turpinia arguta (Lindl.) Seem. (Staphyleaceae); and C. asiana Dikus Stonis, sp. nov. The latter appeared to be a narrow oligophagous species feeding on various Symplocos Jacq.: S. sumuntia Buch.-Ham. ex D. Don, S. poilanei Guill., and Symplocos glauca (Thunb.) Koidz. (Symplocaceae). Nyssaceae and Staphyleaceae are novel host-plant families of Tischeriidae. The new species are illustrated with photographs of adults, male and female genitalia, and leaf mines. The article also briefly discusses about the proportion of monophagous and oligophagous species of Tischeriidae.


Assuntos
Mariposas , Animais , China , Plantas , Sementes
17.
Zootaxa ; 5040(2): 247-264, 2021 Sep 21.
Artigo em Inglês | MEDLINE | ID: mdl-34811043

RESUMO

This is the first record of Urticaceae-feeding trumpet moths (Tischeriidae) from Asia. We describe Paratischeria boehmerica Dikus Stonis, sp. nov. and P. grossa Dikus Stonis, sp. nov., two distinctive new species of Tischeriidae recently discovered from Laos, South East Asia, feeding on plants of the nettle family. Urticaceae is a rare host-plant family for leaf-mining Tischeriidae worldwide. The new species are illustrated with photographs of the adults, male and female genitalia, and the leaf mines.


Assuntos
Lepidópteros , Mariposas , Urticaceae , Distribuição Animal , Animais , Ásia , Genitália , Plantas
18.
Front Cell Dev Biol ; 9: 686844, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34692670

RESUMO

Objective: This study was conducted in order to construct a competitive endogenous RNA (ceRNA) network to screen RNA that plays an important role in colon cancer and to construct a model to predict the prognosis of patients. Methods: The gene expression data of colon cancer were downloaded from the TCGA database. The difference was analyzed by the R software and the ceRNA network was constructed. The survival-related RNA was screened out by combining with clinical information, and the prognosis model was established by lasso regression. CIBERSORT was used to analyze the infiltration of immune cells in colon cancer, and the differential expression of immune cells related to survival was screened out by combining clinical information. The correlation between RNA and immune cells was analyzed by lasso regression. PCR was used to verify the expression of seven RNAs in colon cancer patients with different prognoses. Results: Two hundred and fifteen lncRNAs, 357 miRNAs, and 2,955 mRNAs were differentially expressed in colon cancer. The constructed ceRNA network contains 18 lncRNAs, 42 miRNAs, and 168 mRNAs, of which 18 RNAs are significantly related to survival. Through lasso analysis, we selected seven optimal RNA construction models. The AUC value of the model was greater than 0.7, and there was a significant difference in the survival rate between the high- and low-risk groups. Two kinds of immune cells related to the prognosis of patients were screened out. The results showed that the expression of seven RNA markers in colon cancer patients with different prognoses was basically consistent with the model analysis. Conclusion: We have established the regulatory network of ceRNA in colon cancer, screened out seven core RNAs and two kinds of immune cells, and constructed a comprehensive prognosis model of colon cancer patients.

19.
Front Cell Dev Biol ; 9: 700661, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34631699

RESUMO

Previous studies have revealed the relationship between toll-like receptor 4 (TLR4) polymorphisms and cancer susceptibility. However, the relationship between TLR4 and prognosis and immune cell infiltration in pan-cancer patients is still unclear. Through the Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TCGA) databases, the distinct expression of the TLR4 gene in 24 tumors and normal tissues was analyzed. Univariate Cox proportional hazards regression analysis was used to identify the cancer types whose TLR4 gene expression was related to prognosis. The relationship between TLR4 and tumor cell immune invasion was studied. Spearman's rank correlation coefficient was used to analyze the relationship among TLR4 and immune neoantigens, tumor mutation burden (TMB), microsatellite instability (MSI), DNA repair genes, and DNA methylation. Gene Set Enrichment Analysis (GSEA) was used to identify the tumor-related pathways that the TLR4 gene was highly expressed in; the expression of the TLR4 gene was verified with the Human Protein Atlas (HPA) database. Low expression of TLR4 was associated with an inferior prognosis in kidney renal clear cell carcinoma (KIRC), skin cutaneous melanoma (SKCM), and uterine corpus endometrial carcinoma (UCEC), while high expression was related to a poor prognosis in head and neck squamous cell carcinoma (HNSC), prostate adenocarcinoma (PRAD), stomach adenocarcinoma (STAD), and testicular germ cell tumor (TGCT). The expression of TLR4 was negatively correlated with the expression of B cells in STAD. The expression of TLR4 was positively correlated with the infiltration of B cells, CD4 and CD8 T cells, neutrophils, macrophages, and dendritic cells in STAD, KIRC, UCEC, TGCT, and SKCM. The expression of the TLR4 gene in KIRC, SKCM, STAD, TGCT, and UCEC was highly correlated with inducible T-cell costimulator (ICOS), cytotoxic T lymphocyte-associated molecule 4 (CTLA4), and CD28 immune checkpoints. Spearman's rank correlation coefficient showed that the expression of TLR4 gene was significantly correlated with TMB in STAD and UCEC and was prominently correlated with MSI in TGCT, STAD, and SKCM. The expression of the TLR4 gene was highly correlated with MLH1, MSH2, and MSH6 in KIRC, SKCM, and STAD. The expression of the TLR4 gene was remarkably correlated with the methyltransferases DNA methyltransferase 2 (DNMT2) and DNA methyltransferase 3-beta (DNMT3B) in SKCM and STAD. Enrichment analysis showed that TLR4 was highly expressed in the chemokine signaling pathway and the cell adhesion molecule and cytokine receptor interaction pathway. In summary, the expression of TLR4 is linked to the prognosis of KIRC, SKCM, STAD, TGCT, and UCEC patients and the level of immune infiltration of CD4, CD8 T cells, macrophages, neutrophils, and dendritic cells.

20.
Mol Cancer ; 20(1): 104, 2021 08 19.
Artigo em Inglês | MEDLINE | ID: mdl-34412644

RESUMO

Circulating tumor cells are tumor cells with high vitality and high metastatic potential that invade and shed into the peripheral blood from primary solid tumors or metastatic foci. Due to the heterogeneity of tumors, it is difficult for high-throughput sequencing analysis of tumor tissues to find the genomic characteristics of low-abundance tumor stem cells. Single-cell sequencing of circulating tumor cells avoids interference from tumor heterogeneity by comparing the differences between single-cell genomes, transcriptomes, and epigenetic groups among circulating tumor cells, primary and metastatic tumors, and metastatic lymph nodes in patients' peripheral blood, providing a new perspective for understanding the biological process of tumors. This article describes the identification, biological characteristics, and single-cell genome-wide variation in circulating tumor cells and summarizes the application of single-cell sequencing technology to tumor typing, metastasis analysis, progression detection, and adjuvant therapy.


Assuntos
Biomarcadores Tumorais , Sequenciamento de Nucleotídeos em Larga Escala , Neoplasias/diagnóstico , Neoplasias/genética , Células Neoplásicas Circulantes/metabolismo , Análise de Célula Única , Citometria de Fluxo , Perfilação da Expressão Gênica , Heterogeneidade Genética , Genômica/métodos , Sequenciamento de Nucleotídeos em Larga Escala/métodos , Humanos , Neoplasias/terapia , Células-Tronco Neoplásicas/metabolismo , Análise de Célula Única/métodos , Transcriptoma
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