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1.
Food Chem X ; 22: 101448, 2024 Jun 30.
Artigo em Inglês | MEDLINE | ID: mdl-38764785

RESUMO

Knowledge regarding the denaturation process and control methods for depolymerized sol-state myofibrillar proteins (MPs) during freezing remains scant. This study investigated the effects of protein cross-linking treatment before freezing on physicochemical and subsequent gelation properties of MPs sol subjected to freeze-thaw (F-T) cycles. Results indicated that after five F-T cycles, cross-linked MPs sols showed increased high molecular weight polymers and bound water (T21a and T21b) mobility, suggesting enhanced protein-protein interactions at the expense of protein-water interactions. Upon heating after F-T cycles, gels formed from cross-linked sols exhibited significantly higher hardness, springiness, and cooking loss (P < 0.05), alongside more contracted gel networks. Correlation analysis revealed that the formation and properties of thermal gel after freezing closely relate to changes in molecular conformation and chemical bonds of cross-linked MPs sol during freezing. This study provides new insights into regulating the freezing stability and post-thawed thermal processing properties of sol-based surimi products.

2.
Food Chem ; 451: 139456, 2024 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-38670022

RESUMO

Frozen surimi quality generally correlates with oxidation, but impacts of protein oxidation on salt-dissolved myofibrillar protein (MP) sol in surimi remain unclear. Hence, physicochemical and gelling properties of MP sol with different oxidation degrees were investigated subjected to freeze-thaw cycles. Results showed that mild oxidation (≤1 mmol/L) improved unfrozen MP gel quality with lowest cooking loss (3.29 %) and highest hardness (829.76 N). Whereas, oxidized sol suffering freeze-thawing degenerated severely, showing reduction of 23.85 % of salt soluble protein contents with H2O2 concentrations of 10 mmol/L. Shearing before heating influenced gelling properties of freeze-thawed sol, depending on oxidation levels. Oxidized gel with shearing displayed disorganized network structures, whereas gel without shearing displayed relatively complete appearances without holes under high oxidation condition (10 mmol/L). Overall, freeze-thaw process aggravated denaturation extents of MP sol subjected to oxidation, further causing high water loss and yellow color of heat-induced gel, especially to gel with shearing.


Assuntos
Produtos Pesqueiros , Congelamento , Géis , Proteínas Musculares , Oxirredução , Animais , Géis/química , Produtos Pesqueiros/análise , Proteínas Musculares/química , Suínos , Agregados Proteicos , Miofibrilas/química , Proteínas de Peixes/química , Culinária , Manipulação de Alimentos
3.
Front Biosci (Landmark Ed) ; 29(2): 63, 2024 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-38420816

RESUMO

BACKGROUND: Largemouth bass (Micropterus Salmoides) is an economically important fish species in China. Most research has focused on its growth, disease resistance, and nutrition improvement. However, the sex-determining genes in largemouth bass are still unclear. The transforming growth factor-beta (TGF-ß) gene family, including amh, amhr2 and gsdf, plays an important role in the sex determination and differentiation of various fishes. These genes are potentially involved in sex determination in largemouth bass. METHODS: We performed a systematic analysis of 5 sex-related genes (amh, amhr2, gsdf, cyp19a1, foxl2) in largemouth bass using sequence alignment, collinearity analysis, transcriptome, and quantitative real-time polymerase chain reaction (qRT-PCR). This included a detailed assessment of their sequences, gene structures, evolutionary traits, and gene transcription patterns in various tissues including gonads, and at different developmental stages. RESULTS: Comparative genomics revealed that the 5 sex-related genes were highly conserved in various fish genomes. These genes did not replicate, mutate or lose in largemouth bass. However, some were duplicated (amh, amhr2 and gsdf), mutated (gsdf) or lost (amhr2) in other fishes. Some genes (e.g., gsdf) showed significant differences in genomic sequence between males and females, which may contribute to sex determination and sex differentiation in these fishes. qRT-PCR was applied to quantify transcription profiling of the 5 genes during gonadal development and in the adult largemouth bass. Interestingly, amh, amhr2 and gsdf were predominantly expressed in the testis, while cyp19a1 and foxl2 were mainly transcribed in the ovary. All 5 sex-related genes were differentially expressed in the testes and ovaries from the 56th day post-fertilization (dpf). We therefore speculate that male/female differentiation in the largemouth bass may begin at this critical time-point. Examination of the transcriptome data also allowed us to screen out several more sex-related candidate genes. CONCLUSIONS: Our results provide a valuable genetic resource for investigating the physiological functions of these 5 sex-related genes in sex determination and gonadal differentiation, as well as in the control of gonad stability in adult largemouth bass.


Assuntos
Bass , Animais , Feminino , Masculino , Bass/genética , Alinhamento de Sequência , Testículo , Ovário , Transcriptoma
4.
J Adv Res ; 58: 93-104, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-37220853

RESUMO

INTRODUCTION: Mudskippers are a large group of amphibious fishes that have developed many morphological and physiological capacities to live on land. Genomics comparisons of chromosome-level genome assemblies of three representative mudskippers, Boleophthalmus pectinirostris (BP), Periophthalmus magnuspinnatus (PM) and P. modestus (PMO), may be able to provide novel insights into the water-to-land evolution and adaptation. METHODS: Two chromosome-level genome assemblies for BP and PM were respectively sequenced by an integration of PacBio, Nanopore and Hi-C sequencing. A series of standard assembly and annotation pipelines were subsequently performed for both mudskippers. We also re-annotated the PMO genome, downloaded from NCBI, to obtain a redundancy-reduced annotation. Three-way comparative analyses of the three mudskipper genomes in a large scale were carried out to discover detailed genomic differences, such as different gene sizes, and potential chromosomal fission and fusion events. Comparisons of several representative gene families among the three amphibious mudskippers and some other teleosts were also performed to find some molecular clues for terrestrial adaptation. RESULTS: We obtained two high-quality haplotype genome assemblies with 23 and 25 chromosomes for BP and PM respectively. We also found two specific chromosome fission events in PM. Ancestor chromosome analysis has discovered a common fusion event in mudskipper ancestor. This fusion was then retained in all the three mudskipper species. A loss of some SCPP (secretory calcium-binding phosphoprotein) genes were identified in the three mudskipper genomes, which could lead to reduction of scales for a part-time terrestrial residence. The loss of aanat1a gene, encoding an important enzyme (arylalkylamine N-acetyltransferase 1a, AANAT1a) for dopamine metabolism and melatonin biosynthesis, was confirmed in PM but not in PMO (as previously reported existence in BP), suggesting a better air vision of PM than both PMO and BP. Such a tiny variation within the genus Periophthalmus exemplifies to prove a step-by-step evolution for the mudskippers' water-to-land adaptation. CONCLUSION: These high-quality mudskipper genome assemblies will become valuable genetic resources for in-depth discovery of genomic evolution for the terrestrial adaptation of amphibious fishes.


Assuntos
Perciformes , Água , Animais , Genômica , Peixes/genética , Perciformes/genética , Cromossomos
5.
Adv Sci (Weinh) ; 11(5): e2305467, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-38059813

RESUMO

The fast development of flexible and wearable electronics increases the demand for flexible secondary batteries, and the emerging high-performance K-ion batteries (KIBs) have shown immense promise for the flexible electronics due to the abundant and cost-effective potassium resources. However, the implementation of flexible cathodes for KIBs is hampered by the critical issues of low capacity, rapid capacity decay with cycles, and limited initial Coulombic efficiency. To address these pressing issues, a freestanding K-rich iron hexacyanoferrate/carbon cloth (KFeHCF/CC) electrode is designed and fabricated by cathodic deposition. This innovative binder-free and self-supporting KFeHCF/CC electrode not only provides continuous conductive channels for electrons, but also accelerates the diffusion of potassium ions through the active electrode-electrolyte interface. Moreover, the nanosized potassium iron hexacyanoferrate particles limit particle fracture and pulverization to preserve the structure and stability during cycling. As a result, the K-rich KFeHCF/CC electrode shows a reversible discharging capacity of 110.1 mAh g-1 at 50 mA g-1 after 100 cycles in conjunction with capacity retention of 92.3% after 1000 cycles at 500 mA g-1 . To demonstrate the commercial feasibility, a flexible tubular KIB is assembled with the K-rich KFeHCF/CC electrode, and excellent flexibility, capacity, and stability are observed.

6.
Front Genet ; 13: 1020017, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36406129

RESUMO

The economically important Southern bluefin tuna (Thunnus maccoyii) is a world-famous fast-swimming fish, but its genomic information is limited. Here, we performed whole genome sequencing and assembled a draft genome for Southern bluefin tuna, aiming to generate useful genetic data for comparative functional prediction. The final genome assembly is 806.54 Mb, with scaffold and contig N50 values of 3.31 Mb and 67.38 kb, respectively. Genome completeness was evaluated to be 95.8%. The assembled genome contained 23,403 protein-coding genes and 236.1 Mb of repeat sequences (accounting for 29.27% of the entire assembly). Comparative genomics analyses of this fast-swimming tuna revealed that it had more than twice as many hemoglobin genes (18) as other relatively slow-moving fishes (such as seahorse, sunfish, and tongue sole). These hemoglobin genes are mainly localized in two big clusters (termed as "MNË® and "LAË® respectively), which is consistent with other reported fishes. However, Thr39 of beta-hemoglobin in the MN cluster, conserved in other fishes, was mutated as cysteine in tunas including the Southern bluefin tuna. Since hemoglobins are reported to transport oxygen efficiently for aerobic respiration, our genomic data suggest that both high copy numbers of hemoglobin genes and an adjusted function of the beta-hemoglobin may support the fast-swimming activity of tunas. In summary, we produced a primary genome assembly and predicted hemoglobin-related roles for the fast-swimming Southern bluefin tuna.

7.
Sci Data ; 9(1): 408, 2022 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-35840598

RESUMO

Endemic to Australia, jade perch (Scortum barcoo) is a highly profitable freshwater bass species. It has extraordinarily high levels of omega-3 polyunsaturated fatty acids (PUFAs), which detailed genes involved in are largely unclear. Meanwhile, there were four chromosome-level bass species have been previous sequenced, while the bass ancestor genome karyotypes have not been estimated. Therefore, we sequenced, assembled and annotated a genome of jade perch to characterize the detailed genes for biosynthesis of omega-3 PUFAs and to deduce the bass ancestor genome karyotypes. We constructed a chromosome-level genome assembly with 24 pairs of chromosomes, 657.7 Mb in total length, and the contig and the scaffold N50 of 4.8 Mb and 28.6 Mb respectively. We also identified repetitive elements (accounting for 19.7% of the genome assembly) and predicted 26,905 protein-coding genes. Meanwhile, we performed genome-wide localization and characterization of several important genes encoding some key enzymes in the biosynthesis pathway of PUFAs. These genes may contribute to the high concentration of omega-3 in jade perch. Moreover, we conducted a series of comparative genomic analyses among four representative bass species at a chromosome level, resulting in a series of sequences of a deductive bass ancestor genome.


Assuntos
Cromossomos , Genoma , Percas , Animais , Sequência de Bases , Percas/genética , Filogenia , Sequências Repetitivas de Ácido Nucleico
8.
ACS Nano ; 16(6): 9105-9116, 2022 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-35666854

RESUMO

Featuring a high theoretical capacity, low cost, and abundant resources, sodium metal has emerged as an ideal anode material for sodium ion batteries. However, the real feasibility of sodium metal anodes is still hampered by the uncontrolled sodium dendrite problems. Herein, an artificial three-dimensional (3D) hierarchical porous sodiophilic V2CTx/rGO-CNT microgrid aerogel is fabricated by a direct-ink writing 3D printing technology and further adopted as the matrix of Na metal to deliver a Na@V2CTx/rGO-CNT sodium metal anode. Upon cycling, the V2CTx/rGO-CNT electrode can yield a superior cycling life of more than 3000 h (2 mA cm-2, 10 mAh cm-2) with an average Coulombic efficiency of 99.54%. More attractively, it can even sustain a stable operation over 900 h at 5 mA cm-2 with an ultrahigh areal capacity of 50 mAh cm-2. In situ and ex situ characterizations and density functional theory simulation analyses prove that V2CTx with abundant sodiophilic functional groups can effectively guide the sodium metal nucleation and uniform deposition, thus enabling a dendrite-free morphology. Moreover, a full cell pairing a Na@V2CTx/rGO-CNT anode with a Na3V2(PO4)3@C-rGO cathode can deliver a high reversible capacity of 86.27 mAh g-1 after 400 cycles at 100 mA g-1. This work not only clarifies the superior Na deposition chemistry on the sodiophilic V2CTx/rGO-CNT microgrid aerogel electrode but also offers an approach for fabricating advanced Na metal anodes via a 3D printing method.

9.
Sci Total Environ ; 843: 157011, 2022 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-35772549

RESUMO

The Chinese sturgeon, an important endemism of the Yangtze River, belongs to 'the most critically endangered group of species' worldwide, with overfishing and habitat destruction being the main drivers towards extinction. Newly obtained microchemical comparisons between animals and water from different river locations revealed a probable shifting of the spawning ground few kilometers downstream compared to the only previously known site, located under the Gezhouba Dam. This offers a glimmer of hope for an adaptive response to habitat perturbation caused by the recently built Three Gorges dam on the Yangtze River. On the other hand, genetic data provide an estimate of about 20 breeders participating in the only significant breeding event of the past 10 years. This warns of a near species extinction forecast if no in situ and ex situ conservation efforts occur promptly. Given these results we propose a list of priority conservation actions that urgently need to be promoted, supported, and put into practice.


Assuntos
Conservação dos Recursos Naturais , Pesqueiros , Animais , China , Peixes/fisiologia , Rios
10.
Genomics ; 113(5): 3349-3356, 2021 09.
Artigo em Inglês | MEDLINE | ID: mdl-34343676

RESUMO

Striped catfish (Pangasianodon hypophthalmus), belonging to the Pangasiidae family, has become an economically important fish with wide cultivation in Southeast Asia. Owing to the high-fat trait, it is always considered as an oily fish. In our present study, a high-quality genome assembly of the striped catfish was generated by integration of Illumina short reads, Nanopore long reads and Hi-C data. A 731.7-Mb genome assembly was finally obtained, with a contig N50 of 3.5 Mb, a scaffold N50 of 29.5 Mb, and anchoring of 98.46% of the assembly onto 30 pseudochromosomes. The genome contained 36.9% repeat sequences, and a total 18,895 protein-coding genes were predicted. Interestingly, we identified a tandem triplication of fatty acid binding protein 1 gene (fabp1; thereby named as fabp1-1, fabp1-2 and fabp1-3 respectively), which may be related to the high fat content in striped catfish. Meanwhile, the FABP1-2 and -3 isoforms differed from FABP1-1 by several missense mutations including R126T, which may affect the fatty acid binding properties. In summary, we report a high-quality chromosome-level genome assembly of the striped catfish, which provides a valuable genetic resource for biomedical studies on the high-fat trait, and lays a solid foundation for practical aquaculture and molecular breeding of this international teleost species.


Assuntos
Peixes-Gato , Animais , Peixes-Gato/genética , Cromossomos/genética , Genoma , Sequenciamento de Nucleotídeos em Larga Escala , Sequências Repetitivas de Ácido Nucleico
12.
Nanoscale ; 13(17): 8199-8209, 2021 May 06.
Artigo em Inglês | MEDLINE | ID: mdl-33885119

RESUMO

Potassium-ion battery (KIB) is one of the emerging electrochemical energy storage technologies due to the abundance, low cost, and low redox potential of K. One of the most promising cathodes of KIBs is a layered vanadium-based compound, but it often suffers from fast capacity decay during repeated cycling. Herein, a K0.5V2O5/CNTs hybrid film composed of K0.5V2O5 nanobelt and carbon nanotube (CNT) network was synthesized by an electrostatic self-assembly and vacuum filtration process, and further used as the cathode in KIBs. The K0.5V2O5/CNTs cathode possessed a flexible and interconnected network structure, which not only offered fast kinetics for electron transfer and ion transportation, but also provided an elastic medium to buffer the large volume change of the K0.5V2O5 nanobelts during cycling. As a cathode for KIBs, the K0.5V2O5/CNTs electrode showed a reversible discharge capacity of ∼90 mA h g-1 at 50 mA g-1 and exhibited good cycling stability (88.8% capacity retention for 100 cycles at 50 mA g-1, 82.2% capacity retention for 300 cycles at 500 mA g-1) and excellent rate performance of ∼62 mA h g-1 at 500 mA g-1. K-Ion full battery testing further confirmed its good electrochemical performance by presenting a high reversible discharge capacity (68 mA h g-1 at 50 mA g-1) and long-term retention (>80% after 80 cycles). Interestingly, a cable-shaped KIB with the flexible K0.5V2O5/CNTs film as the cathode electrode was assembled and showed its further application potential as a power source for wearable electronics.

13.
Cell Discov ; 7(1): 11, 2021 Feb 23.
Artigo em Inglês | MEDLINE | ID: mdl-33619264

RESUMO

Although there are various Conus species with publicly available transcriptome and proteome data, no genome assembly has been reported yet. Here, using Chinese tubular cone snail (C. betulinus) as a representative, we sequenced and assembled the first Conus genome with original identification of 133 genome-widely distributed conopeptide genes. After integration of our genomics, transcriptomics, and peptidomics data in the same species, we established a primary genetic central dogma of diverse conopeptides, assuming a rough number ratio of ~1:1:1:10s for the total genes: transcripts: proteins: post-translationally modified peptides. This ratio may be special for this worm-hunting Conus species, due to the high diversity of various Conus genomes and the big number ranges of conopeptide genes, transcripts, and peptides in previous reports of diverse Conus species. Only a fraction (45.9%) of the identified conotopeptide genes from our achieved genome assembly are transcribed with transcriptomic evidence, and few genes individually correspond to multiple transcripts possibly due to intraspecies or mutation-based variances. Variable peptide processing at the proteomic level, generating a big diversity of venom conopeptides with alternative cleavage sites, post-translational modifications, and N-/C-terminal truncations, may explain how the 133 genes and ~123 transcripts can generate thousands of conopeptides in the venom of individual C. betulinus. We also predicted many conopeptides with high stereostructural similarities to the putative analgesic ω-MVIIA, addiction therapy AuIB and insecticide ImI, suggesting that our current genome assembly for C. betulinus is a valuable genetic resource for high-throughput prediction and development of potential pharmaceuticals.

14.
BMJ Open ; 11(2): e038634, 2021 02 16.
Artigo em Inglês | MEDLINE | ID: mdl-33593763

RESUMO

INTRODUCTION: Gallbladder cancer (GBC), the sixth most common gastrointestinal tract cancer, poses a significant disease burden in China. However, no national representative data are available on the clinical characteristics, treatment and prognosis of GBC in the Chinese population. METHODS AND ANALYSIS: The Chinese Research Group of Gallbladder Cancer (CRGGC) study is a multicentre retrospective registry cohort study. Clinically diagnosed patient with GBC will be identified from 1 January 2008 to December, 2019, by reviewing the electronic medical records from 76 tertiary and secondary hospitals across 28 provinces in China. Patients with pathological and radiological diagnoses of malignancy, including cancer in situ, from the gallbladder and cystic duct are eligible, according to the National Comprehensive Cancer Network 2019 guidelines. Patients will be excluded if GBC is the secondary diagnosis in the discharge summary. The demographic characteristics, medical history, physical examination results, surgery information, pathological data, laboratory examination results and radiology reports will be collected in a standardised case report form. By May 2021, approximately 6000 patient with GBC will be included. The clinical follow-up data will be updated until 5 years after the last admission for GBC of each patient. The study aimed (1) to depict the clinical characteristics, including demographics, pathology, treatment and prognosis of patient with GBC in China; (2) to evaluate the adherence to clinical guidelines of GBC and (3) to improve clinical practice for diagnosing and treating GBC and provide references for policy-makers. ETHICS AND DISSEMINATION: The protocol of the CRGGC has been approved by the Committee for Ethics of Xinhua Hospital, Shanghai Jiao Tong University School of Medicine (SHEC-C-2019-085). All results of this study will be published in peer-reviewed journals and presented at relevant conferences. TRIAL REGISTRATION NUMBER: NCT04140552, Pre-results.


Assuntos
Neoplasias da Vesícula Biliar , China/epidemiologia , Neoplasias da Vesícula Biliar/diagnóstico , Neoplasias da Vesícula Biliar/epidemiologia , Neoplasias da Vesícula Biliar/terapia , Humanos , Sistema de Registros
15.
ACS Appl Mater Interfaces ; 12(40): 44934-44942, 2020 Oct 07.
Artigo em Inglês | MEDLINE | ID: mdl-32909433

RESUMO

Lateral homojunctions made of two-dimensional (2D) layered materials are promising for optoelectronic and electronic applications. Here, we report the lateral WSe2-WSe2 homojunction photodiodes formed spontaneously by thickness modulation in which there are unique band structures of a unilateral depletion region. The electrically tunable junctions can be switched from n-n to p-p diodes, and the corresponding rectification ratio increases from about 1 to 1.2 × 104. In addition, an obvious photovoltaic behavior is observed at zero gate voltage, which exhibits a large open voltage of 0.49 V and a short-circuit current of 0.125 nA under visible light irradiation. In addition, due to the unilateral depletion region, the diode can achieve a high detectivity of 4.4 × 1010 Jones and a fast photoresponse speed of 0.18 ms at Vg = 0 and Vds = 0. The studies not only demonstrated the great potential of the lateral homojunction photodiodes for a self-power photodetector but also allowed for the development of other functional devices, such as a nonvolatile programmable diode for logic rectifiers.

16.
Gigascience ; 9(1)2020 01 01.
Artigo em Inglês | MEDLINE | ID: mdl-31895412

RESUMO

BACKGROUND: Seasonal migration is one of the most spectacular events in nature; however, the molecular mechanisms related to this phenomenon have not been investigated in detail. The Chinese tapertail, or Japanese grenadier anchovy, Coilia nasus, is a valuable migratory fish of high economic importance and special migratory dimorphism (with certain individuals as non-migratory residents). RESULTS: In this study, an 870.0-Mb high-quality genome was assembled by the combination of Illumina and Pacific Biosciences sequencing. Approximately 812.1 Mb of scaffolds were linked to 24 chromosomes using a high-density genetic map from a family of 104 full siblings and their parents. In addition, population sequencing of 96 representative individuals from diverse areas along the putative migration path identified 150 candidate genes, which are mainly enriched in 3 Ca2+-related pathways. Based on integrative genomic and transcriptomic analyses, we determined that the 3 Ca2+-related pathways are critical for promotion of migratory adaption. A large number of molecular markers were also identified, which distinguished migratory individuals and non-migratory freshwater residents. CONCLUSIONS: We assembled a chromosome-level genome for the Chinese tapertail anchovy. The genome provided a valuable genetic resource for understanding of migratory adaption and population genetics and will benefit the aquaculture and management of this economically important fish.


Assuntos
Adaptação Biológica , Migração Animal , Peixes/genética , Genética Populacional , Genoma , Animais , Cálcio/metabolismo , Cromossomos , Biologia Computacional/métodos , Proteínas de Peixes/química , Proteínas de Peixes/genética , Proteínas de Peixes/metabolismo , Peixes/metabolismo , Perfilação da Expressão Gênica , Regulação da Expressão Gênica , Ontologia Genética , Variação Genética , Anotação de Sequência Molecular , RNA Mensageiro , Estações do Ano , Sequenciamento Completo do Genoma
17.
Front Chem ; 7: 714, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31709237

RESUMO

Lithium metal is deemed as an ideal anode material for next-generation lithium ion batteries (LIBs) due to its high specific capacity and low redox potential. However, uncontrolled lithium dendrite formation during electrochemical deposition leads to a low Coulombic efficiency and serious safety issues, dragging metallic lithium anodes out of practical application. One promising strategy to suppress lithium dendrite issues is employing a three-dimensional host with admirable conductivity and large surface area. Herein, a vertical graphene nanosheet grown on carbon cloth (VG/CC) synthesized is adopted as the Li deposition host. The three-dimensional VG/CC with a large surface area can provide abundant active nucleation sites and effectively reduce the current density, leading to homogeneous Li deposition to overcome the dendrite issue. The Li@VG/CC anode exhibits a dendrite-free morphology after a long cycle and superior electrochemical performance to that of planar Cu current collector. It delivers a small voltage hysteresis of 90.9 mV at a high current density of 10 mA cm-2 and a Coulombic efficiency of 99% over 100 cycles at 2 mA cm-2. Our results indicate that this all-carbon-based nanostructure host has great potential for next-generation Li metal batteries.

18.
Front Genet ; 10: 776, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31543900

RESUMO

Background: Sturgeons (Chondrostei: Acipenseridae) are a group of "living fossil" fishes at a basal position among Actinopteri. They have raised great public interest due to their special evolutionary position, species conservation challenges, as well as their highly-prized eggs (caviar). The sterlet, Acipenser ruthenus, is a relatively small-sized member of sturgeons and has been widely distributing in both Europe and Asia. In this study, we performed whole genome sequencing, de novo assembly and gene annotation of the tarlet to construct its draft genome. Findings: We finally obtained a 1.83-Gb genome assembly (BUSCO completeness of 81.6%) from a total of 316.8-Gb raw reads generated by an Illumina Hiseq 2500 platform. The scaffold N50 and contig N50 values reached 191.06 and 18.88 kb, respectively. The sterlet genome was predicted to be comprised of 42.84% repeated sequences and to contain 22,184 protein-coding genes, of which 21,112 (95.17%) have been functionally annotated with at least one hit in public databases. A genetic phylogeny demonstrated that the sterlet is situated in the basal position among ray-finned fishes and 4dTv analysis estimated that a recent whole genome duplication occurred 21.3 million years ago. Moreover, seven Hox clusters carrying 68 Hox genes were characterized in the sterlet. Phylogeny of HoxA clusters in the sterlet and American paddlefish divided these sturgeons into two groups, confirming the independence of each lineage-specific genome duplication in Acipenseridae and Polyodontidae. Conclusions: This draft genome makes up for the lack of genomic and molecular data of the sterlet and its Hox clusters. It also provides a genetic basis for further investigation of lineage-specific genome duplication and the early evolution of ray-finned fishes.

19.
Mar Drugs ; 17(7)2019 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-31330852

RESUMO

Limbs originated from paired fish fins are an important innovation in Gnathostomata. Many studies have focused on limb development-related genes, of which the T-box transcription factor 4 gene (tbx4) has been considered as one of the most essential factors in the regulation of the hindlimb development. We previously confirmed pelvic fin loss in tbx4-knockout zebrafish. Here, we report a high-quality genome assembly of the Japanese eel (Anguilla japonica), which is an economically important fish without pelvic fins. The assembled genome is 1.13 Gb in size, with a scaffold N50 of 1.03 Mb. In addition, we collected 24 tbx4 sequences from 22 teleost fishes to explore the correlation between tbx4 and pelvic fin evolution. However, we observed complete exon structures of tbx4 in several pelvic-fin-loss species such as Ocean sunfish (Mola mola) and ricefield eel (Monopterus albus). More interestingly, an inversion of a special tbx4 gene cluster (brip1-tbx4-tbx2b- bcas3) occurred twice independently, which coincides with the presence of fin spines. A nonsynonymous mutation (M82L) was identified in the nuclear localization sequence (NLS) of the Japanese eel tbx4. We also examined variation and loss of hindlimb enhancer B (HLEB), which may account for pelvic fin loss in Tetraodontidae and Diodontidae. In summary, we generated a genome assembly of the Japanese eel, which provides a valuable genomic resource to study the evolution of fish tbx4 and helps elucidate the mechanism of pelvic fin loss in teleost fishes. Our comparative genomic studies, revealed for the first time a potential correlation between the tbx4 gene cluster and the evolutionary development of toxic fin spines. Because fin spines in teleosts are usually venoms, this tbx4 gene cluster may facilitate the genetic engineering of toxin-related marine drugs.


Assuntos
Anguilla/genética , Proteínas de Peixes/genética , Família Multigênica/genética , Proteínas com Domínio T/genética , Nadadeiras de Animais , Animais , Evolução Molecular , Feminino , Genoma , Genômica/métodos , Japão , Anotação de Sequência Molecular , Mutação , Filogenia , Alinhamento de Sequência , Sequenciamento Completo do Genoma
20.
Nanoscale ; 11(28): 13343-13353, 2019 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-31271407

RESUMO

Revealing the electrochemical property-structure relationship and observing the dynamic structural evolution of electrode materials are critically important for battery performance improvement and the corresponding mechanistic understanding. Here, highly crystalline VS2 nanosheets/carbon nanotubes (CNTs) with a core/branch structure were synthesized, exhibiting reversible discharge capacity of ∼850 mA h g-1 at 200 mA g-1, high coulombic efficiency of ∼98%, good cycling stability and superior rate capability. The relationship between the electrochemical properties and the corresponding dynamic microstructural evolution was further revealed with the in situ electron microscopy technique. Our results showed that the intercalation process with the formation of amorphous LixVS2 and the subsequent conversion reactions with the formation of crystalline Li2S and V nanocrystals occurred during the discharging process. Crystalline Li2S was oxidized in the charging process. The core/branched structure ensured a large exposed surface area of the VS2 nanosheets and provided extra space to accommodate the volume expansion. Meanwhile, the CNTs surrounded by VS2 nanosheets not only provided a continuous and fast conducting pathway for carriers throughout the electrodes, but also enhanced the mechanical stability of the electrode material. These factors finally contributed to the superior electrochemical performance of the core/branch-structured VS2/CNTs electrode.

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