The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization.

The evolutionary origins of lingulid brachiopods and their calcium phosphate shells have been obscure. Here we decode the 425-Mb genome of Lingula anatina to gain insights into brachiopod evolution. Comprehensive phylogenomic analyses place Lingula close to molluscs, but distant from annelids. The Lingula gene number has increased to ∼34,000 by extensive expansion of gene families. Although Lingula and vertebrates have superficially similar hard tissue components, our genomic, transcriptomic and proteomic analyses show that Lingula lacks genes involved in bone formation, indicating an independent origin of their phosphate biominerals. Several genes involved in Lingula shell formation are shared by molluscs. However, Lingula has independently undergone domain combinations to produce shell matrix collagens with EGF domains and carries lineage-specific shell matrix proteins. Gene family expansion, domain shuffling and co-option of genes appear to be the genomic background of Lingula's unique biomineralization. This Lingula genome provides resources for further studies of lophotrochozoan evolution.

Distribution coefficients (K(d)) of stable iodine in estuarine and coastal regions, Japan, and their relationship to salinity and organic carbon in sediments.

The sediment-water distribution coefficient, (K(d)), is one of the most important parameters in radionuclide assessment models. In this study, we determined K ds of stable iodine (I) in estuarine and coastal regions. We studied 16 estuarine and coastal regions of Japan and obtained I data on water and sediments. Data on salinity, pH, dissolved organic carbon and dissolved oxygen in water, and organic carbon (OC) in sediments were also obtained as estuarine variables. Determined (K(d))S of I in the Sagami River estuary decreased along the salinity gradient (salinity range, 0.1-33.8), indicating that salinity is one of the important factors controlling the (K(d)) values; however, when the (K(d)) values were compared among all the estuaries, the difference between minimum and maximum (K(d)) values varied by about two orders of magnitude in a narrow salinity range of 30.0-34.4. A significant correlation between (K(d)) value and OC content in sediments was observed in all the stations with a salinity of ≥ 30 except for stations in the Ishikari and Onga River estuaries. The exceptions are probably due to different sources of the sediments, which are explained by the results of relatively low I/OC ratios in sediments in those two estuaries, compared to the other estuaries. Thus, OC in sediments as well as salinity may be responsible for the variation of (K(d))S of I in the estuarine and coastal regions.

Application of a dynamic reaction cell (DRC) ICP-MS in chromium and iron determinations in rock, soil and terrestrial water samples.

Despite environmental and geochemical interests, Cr and Fe have been left beyond the reach of determinations by ICP-MS due to severe interferences originating from Ar. The applicability of a dynamic reaction cell (DRC)-ICP-MS has been examined for determinations in environmental and geochemical samples. The reaction with NH(3) in the DRC system provides an eligible technique to determine Cr, because of a greater improvement in the signal/noise (S/N) ratio due to an effective elimination of interferences arising from Ar (ArC, ArN and ArO), and makes it possible to analyze Cr even at sub-microg L(-1) levels. As compared to non-DRC mode analyses, the DRC technique using m/z 56 appeared to be preferable for Fe determination in most terrestrial waters because of effective suppression of (40)Ar(16)O(+). In addition, the effects of cluster ions, such as (39)K(14)N(1)H(3)(+) and (40)Ca(14)N(1)H(2)(+), on Fe determination were also negligibly small. Measurements using (54)Fe by the DRC mode are also advantageous for Ca-rich samples, such as limestone and dolomite.

Transfer of 137Cs and stable Cs from paddy soil to polished rice in Aomori, Japan.

Rice is a staple food in Japan and other Asian countries, and the soil-to-plant transfer factor of 137Cs released into the environment is an important parameter for estimating the internal radiation dose from food ingestion. Soil and rice grain samples were collected from 20 paddy fields throughout Aomori Prefecture, Japan in 1996 and 1997, and soil-to-polished rice transfer factors were determined. The concentrations of 137Cs, derived from fallout depositions, stable Cs and K in paddy soils were 2.5-21 Bq kg(-1), 1.2-5.3 and 5000-13000 mg kg(-1), respectively. The ranges of 137Cs, stable Cs and K concentration in polished rice were 2.5-85 mBq kg(-1) dry wt., 0.0005-0.0065 and 580-910 mg kg(-1) dry wt., respectively. The geometric mean of soil-to-polished rice transfer factor of 137Cs was 0.0016, and its 95% confidence interval was 0.00021-0.012. The transfer factor of 137Cs was approximately 3 times higher than that of stable Cs at 0.00056, and they were well correlated. This implied that fallout 137Cs, mostly deposited up to the 1980s, is more mobile and more easily absorbed by plants than stable Cs in the soil, although the soil-to-plant transfer of stable Cs can be used for predicting the long-term transfer of 137Cs. The transfer factors of both 137Cs and stable Cs decreased with increasing K concentration in the soil. This suggests that K in the soil was a competitive factor for the transfers of both 137Cs and stable Cs from soil-to-polished rice. However, the transfer factors of 137Cs and stable Cs were independent of the amount of organic materials in soils.