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1.
Sci Rep ; 12(1): 20039, 2022 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-36414670

RESUMO

Alternative computing such as stochastic computing and bio-inspired computing holds promise for overcoming the limitations of von Neumann computers. However, one difficulty in the implementation of such alternative computing is the need for a large number of random bits at the same time. To address this issue, we propose a scalable true-random-number generating scheme that we refer to as XORing shift registers (XSR). XSR generates multiple uncorrelated true random bitstreams using only two true random number generators as entropy sources and can thus be implemented by a variety of logic devices. Toward superconducting alternative computing, we implement XSR using an energy-efficient superconductor logic family, adiabatic quantum-flux-parametron (AQFP) logic. Furthermore, to demonstrate its performance, we design and observe an AQFP-based XSR circuit that generates four random bitstreams in parallel. The results of the experiment confirm that the bitstreams generated by the XSR circuit exhibit no autocorrelation and that there is no correlation between the bitstreams.

2.
J Virol Methods ; 301: 114456, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-34999150

RESUMO

Crude-sap of apple latent spherical virus (ALSV)-infected Chenopodium quinoa leaves was rub-inoculated on the expanded cotyledons of various Cucurbitaceae plants. Most of the species were systemically infected with the virus without obvious symptoms, except pumpkin (Cucurbita maxima). In pumpkin, the ALSV infection was restricted to inoculated cotyledons; it did not spread to the upper true leaves. In situ hybridization showed that the ALSV was confined to part of the cotyledon tissues and it did not invade the phloem tissue, when inoculated at the expanded cotyledon stage. However, when total RNAs from ALSV-infected C. quinoa leaves were inoculated into the cotyledons immediately after germination (folded cotyledon stage) using particle bombardment, ALSV efficiently caused systemic infection. Systemic infection of pumpkin seedlings occurred only when the cotyledons were inoculated within a few days after germination. No systemic infection was observed in the seedlings 4 days after germination. In the grafting test, ALSV was not transmitted from the infected rootstocks to the healthy scions of pumpkins. An efficient virus-induced gene silencing system for pumpkins was established, in which infection with ALSV vectors harboring the phytoene desaturase or sulfur gene fragments resulted in a uniform phenotype in the true leaves of pumpkin seedlings.


Assuntos
Cucurbita , Secoviridae , Inativação Gênica , Vetores Genéticos , Secoviridae/genética
3.
Front Plant Sci ; 12: 643499, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33815450

RESUMO

Quinoa (Chenopodium quinoa), native to the Andean region of South America, has been recognized as a potentially important crop in terms of global food and nutrition security since it can thrive in harsh environments and has an excellent nutritional profile. Even though challenges of analyzing the complex and heterogeneous allotetraploid genome of quinoa have recently been overcome, with the whole genome-sequencing of quinoa and the creation of genotyped inbred lines, the lack of technology to analyze gene function in planta is a major limiting factor in quinoa research. Here, we demonstrate that two virus-mediated transient expression techniques, virus-induced gene silencing (VIGS) and virus-mediated overexpression (VOX), can be used in quinoa. We show that apple latent spherical virus (ALSV) can induce gene silencing of quinoa phytoene desaturase (CqPDS1) in a broad range of quinoa inbred lines derived from the northern and southern highland and lowland sub-populations. In addition, we show that ALSV can be used as a VOX vector in roots. Our data also indicate that silencing a quinoa 3,4-dihydroxyphenylalanine 4,5-dioxygenase gene (CqDODA1) or a cytochrome P450 enzyme gene (CqCYP76AD1) inhibits betalain production and that knockdown of a reduced-height gene homolog (CqRHT1) causes an overgrowth phenotype in quinoa. Moreover, we show that ALSV can be transmitted to the progeny of quinoa plants. Thus, our findings enable functional genomics in quinoa, ushering in a new era of quinoa research.

4.
Arch Virol ; 165(12): 2807-2815, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32990842

RESUMO

Nicotiana benthamiana plants became infected with blueberry latent spherical virus (BLSV) after pollination with pollen grains produced by BLSV-infected N. benthamiana plants. Interestingly, pollen grains produced by BLSV-infected Vaccinium corymbosum (blueberry), Nicotiana alata, and Petunia × hybrida (petunia) plants also transmitted the virus to healthy N. benthamiana plants after pollination. As seen using aniline blue staining and fluorescence microscopy, pollen grains from BLSV-infected blueberry, N. alata, and petunia plants germinated on stigmas of N. benthamiana, and the pollen tubes penetrated the stigmas in a manner similar to that of N. benthamiana pollen grains on N. benthamiana stigmas. Whole-mount in situ hybridization and chromogenic in situ hybridization analysis showed that infected blueberry and N. benthamiana pollen grains germinated on N. benthamiana stigmas, and virus-containing pollen tubes penetrated the stigmas. Tissue blot hybridization analysis revealed that the initial infection sites were the N. benthamiana stigmas pollinated with infected pollen grains from blueberry and N. benthamiana. In addition, the virus spread from the initial infection sites to the phloem in the stigma and style. Taken together, we suggest that penetrating pollen tubes that harbored the virus results in infection foci in the stigma, and the virus then moves to the vascular tissues in the stigma and style and eventually establishes systemic infection.


Assuntos
Transmissão de Doença Infecciosa , Doenças das Plantas/virologia , Vírus de Plantas/fisiologia , Tubo Polínico/virologia , Mirtilos Azuis (Planta)/virologia , Petunia/virologia , Nicotiana/virologia
5.
Commun Biol ; 3(1): 488, 2020 09 04.
Artigo em Inglês | MEDLINE | ID: mdl-32887929

RESUMO

Picorna-like plant viruses are non-enveloped RNA spherical viruses of ~30 nm. Part of the survival of these viruses depends on their capsid being stable enough to harbour the viral genome and yet malleable enough to allow its release. However, molecular mechanisms remain obscure. Here, we report a structure of a picorna-like plant virus, apple latent spherical virus, at 2.87 Å resolution by single-particle cryo-electron microscopy (cryo-EM) with a cold-field emission beam. The cryo-EM map reveals a unique structure composed of three capsid proteins Vp25, Vp20, and Vp24. Strikingly Vp25 has a long N-terminal extension, which substantially stabilises the capsid frame of Vp25 and Vp20 subunits. Cryo-EM images also resolve RNA genome leaking from a pentameric protrusion of Vp24 subunits. The structures and observations suggest that genome release occurs through occasional opening of the Vp24 subunits, possibly suppressed to a low frequency by the rigid frame of the other subunits.


Assuntos
Capsídeo/metabolismo , Genoma Viral , Secoviridae/química , Secoviridae/genética , Capsídeo/ultraestrutura , Chenopodium/virologia , Microscopia Crioeletrônica , Ligação Proteica , Estrutura Secundária de Proteína , Subunidades Proteicas/metabolismo , Secoviridae/ultraestrutura
6.
Sci Rep ; 10(1): 13555, 2020 08 11.
Artigo em Inglês | MEDLINE | ID: mdl-32782359

RESUMO

Lithospermum erythrorhizon is a medicinal plant that produces shikonin, a red lipophilic naphthoquinone derivative that accumulates exclusively in roots. The biosynthetic steps required to complete the naphthalene ring of shikonin and its mechanism of secretion remain unclear. Multiple omics studies identified several candidate genes involved in shikonin production. The functions of these genes can be evaluated using virus-induced gene silencing (VIGS) systems, which have been shown advantageous in introducing iRNA genes into non-model plants. This study describes the development of a VIGS system using an apple latent spherical virus (ALSV) vector and a target gene, phytoene desaturase (LePDS1). Virus particles packaged in Nicotiana benthamiana were inoculated into L. erythrorhizon seedlings, yielding new leaves with albino phenotype but without disease symptoms. The levels of LePDS1 mRNAs were significantly lower in the albino plants than in mock control or escape plants. Virus-derived mRNA was detected in infected plants but not in escape and mock plants. Quantitative PCR and deep sequencing analysis indicated that transcription of another hypothetical PDS gene (LePDS2) also decreased in the defective leaves. Virus infection, however, had no effect on shikonin production. These results suggest that virus-based genetic transformation and the VIGS system silence target genes in soil-grown L. erythrorhizon.


Assuntos
Regulação da Expressão Gênica de Plantas , Inativação Gênica , Lithospermum/genética , Doenças das Plantas/genética , Folhas de Planta/genética , Proteínas de Plantas/antagonistas & inibidores , Plantas Medicinais/genética , Secoviridae/genética , Lithospermum/virologia , Doenças das Plantas/virologia , Folhas de Planta/virologia , Proteínas de Plantas/genética , Plantas Medicinais/virologia , Secoviridae/patogenicidade
7.
Front Microbiol ; 11: 1627, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32754146

RESUMO

Apple russet ring and apple green crinkle are graft-transmitted diseases first reported more than 60 years ago, but at present, no association between a specific virus (variant) and the disease has been clearly demonstrated. In this study, we conducted the following series of experiments to identify the causal viruses (variants) of these apple diseases; (1) comprehensive analysis by next-generation sequencing of all viruses in each apple tree affected with russet ring or green crinkle disease, (2) amplification of full-length genomic cDNA of viruses using primers containing the T3 promoter and the in vitro transcription of infectious viral RNAs, (3) inoculation of viral RNA transcripts to both herbaceous and apple plants, (4) analysis of sequence variants of viruses present in infected plants, (5) back-inoculation of sequence variants of candidate viruses to apple seedlings combined with the virus-induced flowering technology using the apple latent spherical virus vector to reproduce the symptom on the fruit as soon as possible, and (6) reproduction of symptoms on the fruits of apple trees inoculated with sequence variants and the re-isolation of each virus variant from apples showing fruit symptoms. The results showed that one of the sequence variants of the apple chlorotic leaf spot virus causes a characteristic ring-shaped rust on the fruits of infected apple trees and that a sequence variant of the apple stem pitting virus probably causes green crinkle symptoms on an infected apple fruit. Thus, we were able to fulfill Koch's postulates to prove the viral etiology of both the apple russet ring and green crinkle diseases. We also propose an experimental system that can prove whether a virus found in diseased tissues is the pathogen responsible for the diseases when the etiology is undetermined.

8.
Opt Express ; 28(11): 15824-15834, 2020 May 25.
Artigo em Inglês | MEDLINE | ID: mdl-32549418

RESUMO

We propose a scalable readout interface for superconducting nanowire single-photon detector (SSPD) arrays, which we call the AQFP/RSFQ interface. This interface is composed of adiabatic quantum-flux-parametron (AQFP) and rapid single-flux-quantum (RSFQ) logic families. The AQFP part reads out the spatial information of an SSPD array via a single cable, and the RSFQ part reads out the temporal information via a single cable. The hybrid interface has high temporal resolution owing to low timing jitter in the operation of the RSFQ part. In addition, the hybrid interface achieves high circuit scalability because of low supply current in the operation of the AQFP part. Therefore, the hybrid interface is suitable for handling many-pixel SSPD arrays. We demonstrate a four-pixel SSPD array using the hybrid interface as proof of concept. The measurement results show that the hybrid interface can read out all of the pixels with a low error rate and low timing jitter.

9.
Viruses ; 12(1)2020 01 07.
Artigo em Inglês | MEDLINE | ID: mdl-31936111

RESUMO

Apple latent spherical virus (ALSV) was successfully used in promoting flowering (virus-induced flowering, VIF) in apple and pear seedlings. In this paper, we report the use of ALSV vectors for VIF in seedlings and in vitro cultures of grapevine. After adjusting experimental conditions for biolistic inoculation of virus RNA, ALSV efficiently infected not only progeny seedlings of Vitis spp. 'Koshu,' but also in vitro cultures of V. vinifera 'Neo Muscat' without inducing viral symptoms. The grapevine seedlings and in vitro cultures inoculated with an ALSV vector expressing the 'florigen' gene (Arabidopsis Flowering locus T, AtFT) started to set floral buds 20-30 days after inoculation. This VIF technology was successfully used to promote flowering and produce grapes with viable seeds in in vitro cultures of F1 hybrids from crosses between V. ficifolia and V. vinifera and made it possible to analyze the quality of fruits within a year after germination. High-temperature (37 °C) treatment of ALSV-infected grapevine disabled virus movement to newly growing tissue to obtain ALSV-free shoots. Thus, the VIF using ALSV vectors can be used to shorten the generation time of grapevine seedlings and accelerate breeding of grapevines with desired traits.


Assuntos
Flores/genética , Melhoramento Vegetal/métodos , Secoviridae/genética , Vitis/genética , Inoculantes Agrícolas/genética , Inoculantes Agrícolas/fisiologia , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Flores/crescimento & desenvolvimento , Inativação Gênica , Vetores Genéticos , Germinação , Plantas Geneticamente Modificadas , RNA Viral/genética , Secoviridae/fisiologia , Plântula/genética , Plântula/crescimento & desenvolvimento , Plântula/virologia , Sementes/genética , Sementes/crescimento & desenvolvimento , Vitis/crescimento & desenvolvimento , Vitis/virologia
10.
Virology ; 542: 28-33, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-31957663

RESUMO

Horizontal pollen transmission by the raspberry bushy dwarf virus 1b deletion mutant (RBΔ1bstop), which is defective in virus virulence, was significantly decreased compared to wild-type raspberry bushy dwarf virus (wtRBDV). We assessed accumulation of viral genomic (g) RNAs in pollen grains from RBΔ1bstop-infected plants and found that the pollen grains had less viral gRNA than those from wtRBDV-infected plants. In addition, pollen grains from 1b-expressing transgenic plants (1b-plants) infected with RBΔ1bstop were more efficient in horizontal virus transmission to healthy plants after pollination than pollen from RBΔ1bstop-infected wild type plants. Moreover, viral gRNA accumulation in pollen grains from RBΔ1bstop-infected 1b-plants was higher than in pollen from RBΔ1bstop-infected wild type plants. We suggest that 1b increases the amount of viral gRNAs released from elongating pollen grains.


Assuntos
Genes Virais , Doenças das Plantas/virologia , Vírus de Plantas/genética , Pólen/virologia , Rubus/virologia , Transmissão de Doença Infecciosa , Hibridização In Situ , Mutação , Vírus de Plantas/patogenicidade , Plantas Geneticamente Modificadas , Polinização , Vírus de RNA/genética , Vírus de RNA/patogenicidade , RNA Viral/genética , RNA Viral/metabolismo , Rubus/fisiologia , Nicotiana/genética , Nicotiana/fisiologia , Nicotiana/virologia
11.
Virus Genes ; 56(1): 67-77, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31646461

RESUMO

Apple latent spherical virus (ALSV) is a latent virus with wide host range of plant species. In the present study, we prepared ALSV vectors expressing RNA silencing suppressors (RSSs) from eight plant viruses: P19 of carnation Italian ring spot virus (tombusvirus), 2b of peanut stunt virus (cucumovirus), NSs of tomato spotted wilt virus (tospovirus), HC-Pro of bean yellow mosaic virus (potyvirus), γb of barley stripe mosaic virus (hordeivirus), P15 of peanut clump virus (pecluvirus), P1 of rice yellow mottle virus (sobemovirus), or P21 of beet yellows virus (closterovirus). These vectors were inoculated to Nicotiana benthamiana to investigate the effects of RSSs on the virulence and accumulation of ALSV. Among the vectors, ALSV expressing NSs (ALSV-NSs) developed severe mosaic symptoms in newly developed leaves followed by plant death. Infection of ALSV-γb induced characteristic concentric ringspot symptoms on leaves, and plants infected with ALSV-HC-Pro showed mosaic and dwarf symptoms. Infection of the other five ALSV vectors did not show symptoms. ELISA and immunoblot assay indicated that virus titer increased in leaves infected with ALSV-NSs, γb, HC-Pro, or P19. RT-qPCR indicated that the amount of ALSV in plants infected with ALSV-NSs was increased by approximately 45 times compared with that of wtALSV without expression of any RSS. When ALSV-P19, NSs, or HC-Pro was inoculated to Cucumis sativus plants, none of these ALSV vectors induced symptoms, but accumulation of ALSV in plants infected with ALSV-NSs was increased, suggesting that functions of RSSs on virulence and accumulation of ALSV depend on host species.


Assuntos
Vetores Genéticos/genética , Doenças das Plantas/virologia , Vírus de Plantas/metabolismo , Secoviridae/genética , Proteínas Virais/metabolismo , Expressão Gênica , Vetores Genéticos/metabolismo , Folhas de Planta/virologia , Vírus de Plantas/classificação , Vírus de Plantas/genética , RNA Viral/genética , RNA Viral/metabolismo , Secoviridae/metabolismo , Nicotiana/virologia , Proteínas Virais/genética
12.
Arch Virol ; 165(2): 527-533, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31848707

RESUMO

We present a taxonomic proposal for revision of the family Secoviridae, a taxon of plant viruses in the order Picornavirales. We propose the reorganization of the genus Sadwavirus to create three new subgenera and to update the classification of five existing species. The proposed subgenera are "Satsumavirus" (one species: Satsuma dwarf virus), "Stramovirus" (two species: Strawberry mottle virus and Black raspberry necrosis virus) and "Cholivirus" (two species: Chocolate lily virus A and Dioscorea mosaic associated virus).


Assuntos
Secoviridae/classificação , Secoviridae/genética , Genoma Viral/genética , Filogenia , Vírus de RNA/genética , RNA Viral/genética
13.
J Virol Methods ; 273: 113711, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31404574

RESUMO

Apple latent spherical virus (ALSV) can infect a variety of crops, usually without inducing symptoms. Partial gene sequences can be introduced into ALSV vectors for the induction of virus-induced gene silencing (VIGS). These features are beneficial for the estimation of gene functions in plants, with relatively concise experimental manipulations. Given that the infectability of chili peppers (Capsicum spp.) by ALSV was unknown, an ALSV infectivity test was performed on the highly pungent Capsicum chinense cultivar 'Habanero'. The chili pepper plants were not infected after rub-inoculation with a crude homogenate of ALSV-infected Chenopodium quinoa leaves, whereas inoculating them with a concentrated ALSV virus preparation caused an infection. Inoculation with an ALSV RNA preparation by gold particle bombardment resulted in high infection rates (about 90%). The infection was systemic and the infected plants were symptomless. For the induction of VIGS, 201-nucleotide fragments of the putative aminotransferase (pAMT) gene were introduced into the ALSV vector. These ALSV vectors infected 80-90% of RNA-inoculated chili pepper seedlings. Expression of pAMT-mRNA was repressed in the placenta of immature fruit of infected plants. The silencing of pAMT in the infected plants caused a substantial decrease in capsaicin content and a concomitant moderate accumulation of the non-pungent bioactive metabolite capsiate in these plants. These results showed that ALSV could be used to study gene functions by VIGS and to enhance capsiate accumulation in chili pepper through genetic modification.


Assuntos
Capsicum/genética , Capsicum/virologia , Inativação Gênica , Vetores Genéticos , RNA Viral/genética , Secoviridae/genética , Capsaicina/análise , Capsicum/química , Doenças das Plantas/virologia , Folhas de Planta/virologia , Plântula/virologia
14.
Sci Rep ; 9(1): 10514, 2019 Jul 19.
Artigo em Inglês | MEDLINE | ID: mdl-31324832

RESUMO

Adiabatic Quantum-Flux-Parametron (AQFP) logic is an adiabatic superconductor logic family that has been proposed as a future technology towards building extremely energy-efficient computing systems. In AQFP logic, dynamic energy dissipation can be drastically reduced due to the adiabatic switching operations using AC excitation currents, which serve as both clock signals and power supplies. As a result, AQFP could overcome the power/energy dissipation limitation in conventional superconductor logic families such as rapid-single-flux-quantum (RSFQ). Simulation and experimental results show that AQFP logic can achieve an energy-delay-product (EDP) near quantum limit using practical circuit parameters and available fabrication processes. To shed some light on the design automation and guidelines of AQFP circuits, in this paper we present an automatic synthesis framework for AQFP and perform synthesis on 18 circuits, including 11 ISCAS-85 circuit benchmarks, 6 deep-learning accelerator components, and a 32-bit RISC-V ALU, based on our developed standard cell library of AQFP technology. Synthesis results demonstrate the significant advantage of AQFP technology. We forecast 9,313×, 25,242× and 48,466× energy-per-operation advantage, compared to the synthesis results of TSMC (Taiwan Semiconductor Manufacturing Company) 12 nm fin field-effect transistor (FinFET), 28 nm and 40 nm complementary metal-oxide-semiconductor (CMOS) technology nodes, respectively.

15.
Methods Mol Biol ; 2028: 273-288, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31228121

RESUMO

The apple latent spherical virus (ALSV), originally isolated from an apple tree in Japan, is a small spherical virus with a diameter of 25 nm and comprises a bisegmented, single-stranded RNA genome (RNA1 and RNA2) and three different capsid proteins (Vp25, Vp20, and Vp24). The virus can experimentally infect a broad range of plants including, not only model plants (Arabidopsis thaliana and Nicotiana species) but also economically important crops such as cucumber, soybean, tomato, fruit trees, and flowers. ALSV has been used as an effective plant virus vector for virus-induced gene silencing (VIGS) to assess gene functions because the virus infects most of the host plants without showing any symptoms and induces a uniform knockout phenotype in infected plants. Moreover, the VIGS persists throughout plant growth in infected plants. Here, we show that genetically engineered ALSV vectors (ALSV vaccines) containing a partial genome sequence of pathogenic viruses display a high degree of cross-protection against the challenge inoculation of the corresponding pathogenic viruses. Treatment effects can also be expected in virus-infected plants by subsequent inoculation with ALSV vaccine.


Assuntos
Inativação Gênica , Vírus de Plantas/imunologia , Interferência de RNA , Secoviridae/genética , Secoviridae/imunologia , Vacinas , Vacinas Virais/imunologia , Proteção Cruzada , Fenótipo
16.
J Exp Bot ; 70(15): 3941-3953, 2019 08 07.
Artigo em Inglês | MEDLINE | ID: mdl-31035293

RESUMO

Genes in the FLOWERING LOCUS T (FT) family integrate external and internal signals to control various aspects of plant development. In soybean (Glycine max), FT2a and FT5a play a major role in floral induction, but their roles in post-flowering reproductive development remain undetermined. Ectopic overexpression analyses revealed that FT2a and FT5a similarly induced flowering, but FT5a was markedly more effective than FT2a for the post-flowering termination of stem growth. The down-regulation of Dt1, a soybean orthologue of Arabidopsis TERMINAL FLOWER1, in shoot apices in early growing stages of FT5a-overexpressing plants was concomitant with highly up-regulated expression of APETALA1 orthologues. The Dt2 gene, a repressor of Dt1, was up-regulated similarly by the overexpression of FT2a and FT5a, suggesting that it was not involved in the control of stem termination by FT5a. In addition to the previously reported interaction with FDL19, a homologue of the Arabidopsis bZIP protein FD, both FT2a and FT5a interacted with FDL12, but only FT5a interacted with FDL06. Our results suggest that FT2a and FT5a have different functions in the control of post-flowering stem growth. A specific interaction of FT5a with FDL06 may play a key role in determining post-flowering stem growth in soybean.


Assuntos
Flores/crescimento & desenvolvimento , Flores/metabolismo , Glycine max/crescimento & desenvolvimento , Glycine max/metabolismo , Proteínas de Plantas/metabolismo , Caules de Planta/crescimento & desenvolvimento , Caules de Planta/metabolismo , Flores/genética , Regulação da Expressão Gênica de Plantas/genética , Regulação da Expressão Gênica de Plantas/fisiologia , Proteínas de Plantas/genética , Caules de Planta/genética , Glycine max/genética
17.
Int J Mol Sci ; 20(5)2019 Feb 27.
Artigo em Inglês | MEDLINE | ID: mdl-30818769

RESUMO

(1) Background: Silene latifolia is a dioecious plant, whose sex is determined by XY-type sex chromosomes. Microbotryum lychnidis-dioicae is a smut fungus that infects S. latifolia plants and causes masculinization in female flowers, as if Microbotryum were acting as a sex-determining gene. Recent large-scale sequencing efforts have promised to provide candidate genes that are involved in the sex determination machinery in plants. These candidate genes are to be analyzed for functional characterization. A virus vector can be a tool for functional gene analyses; (2) Methods: To develop a viral vector system in S. latifolia plants, we selected Apple latent spherical virus (ALSV) as an appropriate virus vector that has a wide host range; (3) Results: Following the optimization of the ALSV inoculation method, S. latifolia plants were infected with ALSV at high rates in the upper leaves. In situ hybridization analysis revealed that ALSV can migrate into the flower meristems in S. latifolia plants. Successful VIGS (virus-induced gene silencing) in S. latifolia plants was demonstrated with knockdown of the phytoene desaturase gene. Finally, the developed method was applied to floral organ genes to evaluate its usability in flowers; (4) Conclusion: The developed system enables functional gene analyses in S. latifolia plants, which can unveil gene functions and networks of S. latifolia plants, such as the mechanisms of sex determination and fungal-induced masculinization.


Assuntos
Inativação Gênica , Secoviridae/fisiologia , Silene/genética , Regulação para Baixo/genética , Flores/virologia , Regulação da Expressão Gênica de Plantas , Técnicas de Silenciamento de Genes , Genes de Plantas , Fenótipo , Doenças das Plantas/virologia , Reprodutibilidade dos Testes
18.
Hortic Res ; 6: 18, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30729008

RESUMO

Apple latent spherical virus (ALSV) vector is a convenient alternative to genetic transformation in horticultural plants, especially in species recalcitrant to genetic transformation. ALSV, an RNA virus, can infect a wide variety of plant species including major horticultural plants without inducing symptoms. Here, methodologies were developed for infection of ALSV vectors to strawberry seedlings and plantlets cultured in vitro. A seed-propagated F1 hybrid strawberry cultivar 'Yotsuboshi' was aseptically grown on half-strength Murashige-Skoog medium for 1 month and true leaves were inoculated with an ALSV RNA preparation by particle bombardment. ALSV vector infection rates varied from 58 to 100% according to the insertion sequences, in 'Yotsuboshi' seedlings. Plantlets ('Dover') propagated in vitro could also be infected with ALSV vector at a similar infection rate. For virus-induced gene silencing (VIGS), we prepared an ALSV vector carrying a 201 nucleotide segment of the strawberry phytoene desaturase gene. 'Yotsuboshi' and 'Dover' plants infected by this vector generated completely white leaves at fifth or sixth true leaves and above. For virus-induced flowering (VIF), we used an ALSV vector expressing the Arabidopsis thaliana flowering locus T gene. Strawberry seedlings infected by this vector started to flower from about 2 months post inoculation and bore fruits with viable seeds. The ALSV vector was no longer detected in any of the seedlings from early-flowered strawberries. Thus, the ALSV vector may be beneficial for examination of gene functions by VIGS in strawberry, and VIF using ALSV vector constitutes an effective new plant breeding technique for the promotion of cross-breeding in strawberry.

19.
Virology ; 526: 222-230, 2019 01 02.
Artigo em Inglês | MEDLINE | ID: mdl-30447555

RESUMO

A product translated from the 1b gene of raspberry bushy dwarf virus (RBDV) was specifically detected in RBDV-infected Nicotiana benthamiana plants by immunoblot analysis. To analyze the effects of the 1b gene on virus infection in host plants, an RBDV deletion mutant virus (RB∆1bstop), which is unable to express the 1b gene, was constructed and inoculated to N. benthamiana plants. The results showed that accumulation of the virus genomic (g) RNAs 1 and 2 decreased in inoculated leaves, and that systemic virus spread was delayed compared with wild-type RBDV. In contrast, accumulation of the viral gRNAs 1 and 2 was elevated in RB∆1bstop-infected leaf tissues during ectopic expression of the 1b gene. Furthermore, we found that the 1b has weak RNA silencing suppressor activity.


Assuntos
Doenças das Plantas/virologia , Vírus de Plantas/genética , Vírus de Plantas/patogenicidade , Proteínas Virais/metabolismo , Expressão Gênica , Mutação , Plantas Geneticamente Modificadas , Interferência de RNA , RNA Viral/metabolismo , Nicotiana/virologia , Proteínas Virais/genética , Virulência/genética
20.
Planta ; 248(6): 1431-1441, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30128602

RESUMO

MAIN CONCLUSION: Gentian plants ( Gentiana triflora ) severely restrict apple latent spherical virus (ALSV) invasion to the gametes (pollens and ovules) and block seed transmission to progeny plants. Early flowering of horticultural plants can be induced by infection of ALSV vector expressing Flowering Locus T (FT) gene. In the present study, flowering of gentian plants was induced by infection with an ALSV vector expressing a gentian FT gene and the patterns of seed transmission of ALSV in gentian were compared with those in apple and Nicotiana benthamiana. Infection of gentian progeny plants with ALSV was examined by quantitative reverse transcription-polymerase chain reaction (qRT-PCR), reverse transcription-loop-mediated isothermal amplification (RT-LAMP), and enzyme-linked immunosorbent assay (ELISA). ALSV was not transmitted to the progeny gentian plants, whereas small proportions of apple and N. benthamiana progeny plants are infected with ALSV. The in situ hybridization analyses indicated that ALSVs are not present in gentian pollen and ovules, but detected in most of gametes in apple and N. benthamiana. Collectively, these results suggest that seed transmission of ALSV is blocked in gentian plants through the unknown barriers present in their gametes. On the other hand, apple and N. benthamiana seem to minimize ALSV seed transmission by inhibiting viral propagation in embryos.


Assuntos
Gentiana/virologia , Malus/virologia , Doenças das Plantas/virologia , Secoviridae/fisiologia , Gentiana/citologia , Células Germinativas Vegetais/citologia , Células Germinativas Vegetais/virologia , Malus/citologia , Doenças das Plantas/prevenção & controle , Reação em Cadeia da Polimerase , Secoviridae/genética , Plântula/citologia , Plântula/virologia , Sementes/citologia , Sementes/virologia , Nicotiana/citologia , Nicotiana/virologia
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