Genome-Wide Characterization of Somatic Mutation Patterns in Cloned Dogs Reveals Implications for Neuronal Function, Tumorigenesis, and Aging.

Studies on somatic mutations in cloned animals have revealed slight genetic variances between clones and their originals, but have yet to identify the precise effects of these differences within the organism. Somatic mutations contribute to aging and are implicated in tumor development and other age-related diseases. Thus, we compared whole genome sequencing data from an original dog with that of cloned dogs, identifying candidate somatic mutations that were disproportionately located within genes previously implicated in aging. The substitutional signature of cloning-specific somatic mutations mirrored the uniform distribution characteristic of the signature associated with human aging. Further analysis of genes revealed significant enrichment of traits associated with body size as well as the molecular mechanisms underlying neuronal function and tumorigenesis. Overall, the somatic mutations found in cloned dogs may indicate a conserved mechanism driving aging across species and a broad spectrum of pathway alterations.

Studies on the concentrations of particulate matter and ammonia gas from three laying hen rearing systems during the summer season.

This study aimed to measure the concentrations of particulate matter (PM10, PM2.5) and ammonia gas (NH3) from different types of laying hen houses during summer. The treatment groups included conventional cage, floor pens, and aviary system, with tunnel ventilation system applied to all poultry houses. The PM10 concentration was highest in the aviary system from 10:00 h to 18:30 h, whereas in the cage, it remained high after 18:30 h until 7:30 h the next day. The cage showed high levels of PM2.5 from 18:30 h to 7:30 h the next day. The correlation between the three breeding systems showed an R2 < 0.2. The mean daily concentrations of PM10, PM2.5, and NH3 were highest in the cage, among all the poultry houses. On comparing the two welfare breeding systems (floor pens and aviary system), particulate matter concentrations were higher in the floor pens, while the aviary system had higher level of NH3. However, no significant differences were observed between the concentrations of PM10, PM2.5, and NH3 between the three laying hen houses in summer. This study provides basic data for improving the rearing environment in the three different types of poultry housing systems.

Pulmonary Proteome and Protein Networks in Response to the Herbicide Paraquat in Rats.

Paraquat (PQ) has been one of the most widely used herbicides in the world. PQ, when ingested, is toxic to humans and may cause acute respiratory distress syndrome. To investigate molecular perturbation in lung tissues caused by PQ, Sprague Dawley male rats were fed with PQ at a dose of 25 mg/kg body weight for 20 times in four weeks. The effects of PQ on cellular processes and biological pathways were investigated by analyzing proteome in the lung tissues in comparison with the control. Among the detected proteins, 321 and 254 proteins were over-represented and under-represented, respectively, in the PQ-exposed rat lung tissues in comparison with the no PQ control. All over- and under-represented proteins were subjected to Ingenuity Pathway Analysis to create 25 biological networks and 38 pathways of interacting protein clusters. Over-represented proteins were involved in the C-jun-amino-terminal kinase pathway, caveolae-mediated endocytosis signaling, cardiovascular-cancer-respiratory pathway, regulation of clathrin-mediated endocytosis, non-small cell lung cancer signaling, pulmonary hypertension, glutamate receptor, immune response and angiogenesis. Under-represented proteins occurred in the p53 signaling pathway, mitogen-activated protein kinase signaling pathway, cartilage development and angiogenesis inhibition in the PQ-treated lungs. The results suggest that PQ may generate reactive oxygen species, impair the MAPK/p53 signaling pathway, activate angiogenesis and depress apoptosis in the lungs.