Fitness difference between two synonymous mutations of Phytophthora infestans ATP6 gene.

BACKGROUND: Sequence variation produced by mutation provides the ultimate source of natural selection for species adaptation. Unlike nonsynonymous mutation, synonymous mutations are generally considered to be selectively neutral but accumulating evidence suggests they also contribute to species adaptation by regulating the flow of genetic information and the development of functional traits. In this study, we analysed sequence characteristics of ATP6, a housekeeping gene from 139 Phytophthora infestans isolates, and compared the fitness components including metabolic rate, temperature sensitivity, aggressiveness, and fungicide tolerance among synonymous mutations. RESULTS: We found that the housekeeping gene exhibited low genetic variation and was represented by two major synonymous mutants at similar frequency (0.496 and 0.468, respectively). The two synonymous mutants were generated by a single nucleotide substitution but differed significantly in fitness as well as temperature-mediated spatial distribution and expression. The synonymous mutant ending in AT was more common in cold regions and was more expressed at lower experimental temperature than the synonymous mutant ending in GC and vice versa. CONCLUSION: Our results are consistent with the argument that synonymous mutations can modulate the adaptive evolution of species including pathogens and have important implications for sustainable disease management, especially under climate change.

Recent Advances in Zeolites-Catalyzed Biomass Conversion to Hydroxymethylfurfural: The Role of Porosity and Acidity.

Biomass is an attractive raw material for the production of fuel oil and chemical intermediates due to its abundant reserves, low price, easy biodegradability, and renewable use. Hydroxymethylfurfural (5-HMF) is a valuable platform chemically derived from biomass that has gained significant research interest owing to its economic and environmental benefits. In this review, recent advances in biomass catalytic conversion systems for 5-HMF production were examined with a focus on the catalysts selection and feedstocks' impact on the 5-HMF selectivity and yield. Specifically, the potential of zeolite-based catalysts for efficient biomass catalysis was evaluated given their unique pore structure and tunable (Lewis and Brønsted) acidity. The benefits of hierarchical modifications and the interactions between porosity and acidity in zeolites, which are critical factors for the development of green catalytic systems to convert biomass to 5-HMF efficiently, were summarized and assessed. This Review suggests that zeolite-based catalysts hold significant promise in facilitating the sustainable utilization of biomass resources.

Segregation in mixtures of granular chains and spherical grains under vertical vibration.

We experimentally investigate segregation behaviors of binary granular mixtures consisting of granular chains and spherical grains with different interstitial media under vertical vibrations. A quantitative criterion is proposed to locate the boundaries between different vibrating phases. The water-immersed granular mixture exhibits two interesting types of segregation behaviors: chain-on-top and sandwich patterns. However, the phenomenon of sandwich segregation is absent for the air-immersed mixture. The topological differences of phase diagrams between two different environments indicate that the interstitial fluid plays an important role on the granular demixing. Additionally, the phase behaviors of mixtures for the different chain lengths show a not significant discrepancy. Finally, the vibrating thickness ratio determining the phase boundary characterizes the mixing extent of the granular bed. The estimated ratios for various chain lengths exhibit a monotonically decreasing dependence, when the vibration frequency increases.