Ultrahigh-Throughput Intact Protein Analysis with Acoustic Ejection Mass Spectrometry.

The need for high-throughput intact protein analysis has been rising as drug discovery increasingly requires the analysis of large sets of covalent modifiers and protein therapeutics. Liquid chromatography-mass spectrometry (LC-MS) is the primary analytical tool used to date to characterize proteins within the biopharmaceutical industry. However, the speed of LC-MS prevents the analysis of large-scale sample sets (>1000 within a day). Acoustic ejection mass spectrometry (AEMS) has recently been established as an electrospray ionization (ESI)-MS based platform with both fast analytical throughput and high data quality. Since its introduction, this technology has been applied in numerous fields with a primary focus on small-molecule analysis in high-throughput drug discovery and development. Here we explore the application of AEMS to high-throughput intact protein analysis for proteins ranging in molecular weight from 17 to 150 kDa on a prototype high-resolution quadrupole time-of-flight (HR QTOF) based AEMS system. Data quality obtained on this platform is comparable to LC-MS, while the analysis speed is significantly improved to one-second-per-sample. This ultrahigh-throughput intact protein analysis platform has the potential to be used broadly in drug discovery.

Binding Interactions in Copper, Silver and Gold π-Complexes.

The copper(I), silver(I), and gold(I) metals bind π-ligands by σ-bonding and π-back bonding interactions. These interactions were investigated using bidentate ancillary ligands with electron donating and withdrawing substituents. The π-ligands span from ethylene to larger terminal and internal alkenes and alkynes. Results of X-ray crystallography, NMR, and IR spectroscopy and gas phase experiments show that the binding energies increase in the order Ag

Copper(I) and silver(I) chemistry of vinyltrifluoroborate supported by a bis(pyrazolyl)methane ligand.

Although unsaturated organotrifluoroborates are common synthons in metal-organic chemistry, their transition metal complexes have received little attention. [CH2(3,5-(CH3)2Pz)2]Cu(CH2[double bond, length as m-dash]CHBF3), (SIPr)Cu(MeCN)(CH2[double bond, length as m-dash]CHBF3) and [CH2(3,5-(CH3)2Pz)2]Ag(CH2[double bond, length as m-dash]CHBF3) represent rare, isolable molecules featuring a vinyltrifluoroborate ligand on coinage metals. The X-ray crystal structures show the presence of three-coordinate metal sites in these complexes. The vinyltrifluoroborate group binds asymmetrically to the metal site in [CH2(3,5-(CH3)2Pz)2]M(CH2[double bond, length as m-dash]CHBF3) (M = Cu, Ag) with relatively closer M-C(H)2 distances. The computed structures of [CH2(3,5-(CH3)2Pz)2]M(CH2[double bond, length as m-dash]CHBF3) and M(CH2[double bond, length as m-dash]CHBF3), however, have shorter M-C(H)BF3 distances than M-C(H)2. These molecules feature various inter- or intra-molecular contacts involving fluorine of the BF3 group, possibly affecting these M-C distances. The binding energies of [CH2[double bond, length as m-dash]CHBF3]- to Cu+, Ag+ and Au+ have been calculated at the wB97XD/def2-TZVP level of theory, in the presence and absence of the supporting ligand CH2(3,5-(CH3)2Pz)2. The calculation shows that Au+ has the strongest binding to the [CH2[double bond, length as m-dash]CHBF3]- ligand, followed by Cu+ and Ag+, irrespective of the presence of the supporting ligand. However, in all three metals, the supporting ligand weakens the binding of olefin to the metal. The same trends were also found from the analysis of the σ-donation and π-backbonding interactions between the metal fragment and the π and π* orbitals of [CH2[double bond, length as m-dash]CHBF3]-.

Affinity and chemical enrichment strategies for mapping low-abundance protein modifications and protein-interaction networks.

Protein post-translational modifications and protein interactions are the central research areas in mass-spectrometry-based proteomics. Protein post-translational modifications affect protein structures, stabilities, activities, and all cellular processes are achieved by interactions among proteins and protein complexes. With the continuing advancements of mass spectrometry instrumentations of better sensitivity, speed, and performance, selective enrichment of modifications/interactions of interest from complex cellular matrices during the sample preparation has become the overwhelming bottleneck in the proteomics workflow. Therefore, many strategies have been developed to address this issue by targeting specific modifications/interactions based on their physical properties or chemical reactivities, but only a few have been successfully applied for systematic proteome-wide study. In this review, we summarized the highlights of recent developments in the affinity enrichment methods focusing mainly on low stoichiometric protein lipidations. Besides, to identify potential glyoxal modified arginines, a small part was added for profiling reactive arginine sites using an enrichment reagent. A detailed section was provided for the enrichment of protein interactions by affinity purification and chemical cross-linking, to shed light on the potentials of different enrichment strategies, along with the unique challenges in investigating individual protein post-translational modification or protein interaction network.

Organic Azide and Auxiliary-Ligand-Free Complexes of Coinage Metals Supported by N-Heterocyclic Carbenes.

Organic azide complexes of copper(I) and silver(I), [(SIPr)CuN(1-Ad)NN][SbF6], [(SIPr)CuN(2-Ad)NN][SbF6], [(SIPr)CuN(Cy)NN][SbF6], and [(SIPr)AgN(1-Ad)NN][SbF6] have been synthesized by using Ag[SbF6] and the corresponding organic azides with (SIPr)CuBr and (SIPr)AgCl (SIPr = 1,3-bis(2,6-diisopropylphenyl)imidazolin-2-ylidene). The copper and silver organic azide complexes were characterized by various spectroscopic techniques and X-ray crystallography. Group trends of isoleptic Cu(I), Ag(I), and Au(I) organic azide complexes are presented on the basis of experimental data and a detailed computational study. The νasym(N3) values of the metal-bound 1-AdNNN in [(SIPr)MN(1-Ad)NN]+ follow the order Ag < Cu < Au. DFT calculations show that gold(I) forms the strongest bond with 1-AdNNN in this series, while silver has the weakest interaction. Furthermore, auxiliary ligand free coinage metal N-heterocyclic carbene complexes, [(SIPr)M][SbF6], have been synthesized via metathesis reactions of (SIPr)MCl (M = Cu, Ag, Au) with Ag[SbF6]. X-ray crystal structures of dinuclear [(SIPr)Ag]2[SbF6]2 and [(SIPr)Au]2[SbF6]2 are also reported. They show close metallophilic contacts. [(SIPr)Au]2[SbF6]2 reacts with OEt2, SMe2, and CNtBu to afford [(SIPr)Au(OEt2)][SbF6], [(SIPr)Au(SMe2)][SbF6], and [(SIPr)Au(CNtBu)][SbF6] adducts, respectively.