CBXs-related prognostic gene signature correlates with immune microenvironment in gastric cancer.

BACKGROUND: Chromobox (CBX) proteins are important Polycomb family proteins in the development of gastric cancer. Nonetheless, the relationship between CBXs and gastric cancer microenvironment remains unclear. METHODS: Multiple databases were used for the analysis of CBXs expression and clinical value in gastric cancer patients. A Cox regression analysis was used to evaluate the prognostic importance of CBXs. Thereafter, regression analysis of LASSO Cox was used to construct the prognostic model. Spearman's correlation between risk score and immune infiltration was analyzed using the McP-counter algorithm. A predicted nomogram was developed to predict the overall survival of gastric cancer patients after 1, 2, and 3 years. RESULTS: In contrast with normal tissues, mRNA and protein expression levels of CBX2/3 were significantly high in gastric cancer tissues, whereas those of CBX6/7 were low. CBXs significantly correlated with immune subtypes and molecular subtypes. A prognostic gene model based on five CBX genes (CBX1, CBX2, CBX3, CBX7, and CBX8) predicted the overall survival of gastric cancer patients. A significant correlation was noted between the risk score of the CBXs-related prognostic gene model and immune-cell infiltration. Low risk patients could achieve a better response to immune checkpoint inhibitors. A predictive nomogram constructed using the above five CBX genes revealed that overall survival rates over 1, 2, and 3 years could be reasonably predicted. Therefore, the roles of CBXs were associated with chromatin modifications and histone methylation, etc. Conclusion: In summary, we identified a prognostic CBXs model comprising five genes (CBX1, CBX2, CBX3, CBX7, and CBX8) for gastric cancer patients through bioinformatics analysis.

Long Noncoding RNA ADAMTS9-AS2 Inhibits the Proliferation, Migration, and Invasion in Bladder Tumor Cells.

BACKGROUND: Bladder tumor is the fifth most prevalent tumor in men, yet its pathogenesis remains to be fully identified. Albeit a host of long noncoding RNAs (lncRNA) are emerging as new players involved in bladder tumor, the functions of many lncRNAs are still enigmatic. Reports on the deluge of studies on lncRNA ADAMTS9-AS2 have been convincingly associated with various tumors, but without mention of its roles in bladder tumor. Therefore, the roles of ADAMTS9-AS2 in bladder tumor cells were explored in our study. MATERIALS AND METHODS: Quantitative real-time PCR assays and bioinformatic tools were applied in bladder tumor cells to identify the ADAMTS9-AS2 and ADAMTS9 expression. Western blot assays were performed to obtain the protein levels of bladder tumor related key molecules. CCK8, clonogenic assay, scratch wound healing, and transwell assays were separately applied to identify the functional roles of ADAMTS9-AS2 on proliferation, migration, and invasion in bladder tumor cells. RESULTS: First, ADAMTS9-AS2 downregulation in bladder tumor cells was identified. Overexpression and knockdown experiments showed that ADAMTS9-AS2 expression was positively related to ADAMTS9, which is in accordance with the results from GEO database. Second, ADAMTS9-AS2 contributed to the inhibition of proliferation, migration, and invasion in bladder tumor cells. Third, ADAMTS9-AS2 was linked with PI3K/AKT/mTOR pathway related-molecules, several key autophagy, and apoptotic proteins. CONCLUSION: Conjointly, our findings suggested that ADAMTS9-AS2 might function as a tumor suppressor to restrain the proliferation, migration, and invasion in bladder tumor cells. The potential mechanism of ADAMTS9-AS2 related to PI3K/AKT/mTOR signal pathway was further identified. Of note, we found that ADAMTS9-AS2 has a significant effect on several key autophagy and apoptotic proteins. Therefore, these observations will provide supportive evidence to ADAMTS9-AS2 as a potential biomarker in patients with bladder tumor.

[Response of copepod community characteristics to environmental factors in the Backshore Wetland of Expo Garden, Shanghai].

The Backshore Wetland of Expo Garden was the emphasis of the World Expo construction project in Shanghai in 2010, China programming district. We carried out studies on the community structure and spatial-temporal variation of copepod from September 2009 to August 2010. Statistical Product and Service Solutions (SPSS) was used for relevant statistical analysis between physicochemical parameters and copepod standing crop. Canonical correspondence analysis (CCA) was applied to further explore the correlation between copepod species and environmental parameters using CANOCO 4.5. A total of 23 copepod species in 11 genera, 6 families were identified. 5 dominant species of copepod were recorded during the survey period. They were Eucyclops serrulatus, Thermocyclops taihokuensis, Mesocyclops leuckarti, Thermocyclops brevifurcatus and Microcyclops varicans. The annual mean density of copepod was (8.6 +/- 16.6) ind x L(-1) and the biomass was (0.083 6 +/- 0.143 1) mg x L(-1). The standing crop of copepod had its first peak in July, the second in October and the bottom in January. The highest trophic level was measured at Site 1, decreasing along the flowing direction of the water current, and the lowest level was found at Site 10. The Margelf index remained low in winter and spring, but was increased in summer and autumn. The community structure of copepod was analyzed in relation to water quality parameters by canonical correspondence analysis (CCA). Water temperature, pH, nitrate nitrogen, nitrite nitrogen, TN, TP and dissolved oxygen were strongly correlated with the copepod community structure.

[Annual dynamics of cladocera community structure in Backshore Wetland of Expo Garden, Shanghai].

The Backshore Wetland of Expo Garden, Shanghai was one of the key parts of the World Expo construction project in 2010. From September 2009 to August 2010, a monthly investigation was conducted to understand the spatiotemporal dynamics of cladocera community structure (including species composition and standing crop) and related main affecting factors in the Backshore Wetland. A total of 36 cladocera species in 13 genera of 5 families were identified through the year. There were 12 dominant species, mainly Chydorus sphaericus, C. ovalis, Diaphanosoma leuchtenbergianum, and Sida crystalline. The mean annual abundance and biomass of the cladocera were 5.7 ind x L(-1) and 0.3559 mg x L(-1), respectively, and the annual dynamics of the standing crop showed bimodal, with the main peak in April and July, and the second peak in July and May, respectively. The Shannon index, Pielou index, and Margelf index were high in summer and autumn, but low in winter and spring. The canonical correspondence analysis (CCA) showed that water temperature, pH, dissolved oxygen, and nitrite nitrogen were the main factors affecting the community structure of cladocera in the Backshore Wetland.

[Bioremediation efficiency of applying Daphnia magna and submerged plants: a case study in Dishui Lake of Shanghai, China].

From April 2007 to January 2008, a bioremediation experiment was conducted in a diversion channel of D-port pilot area of Dishui Lake (the channel length is 950 m, and its water volume is 10000 m3). Daphnia magna was first introduced to filter the high biomass of phytoplankton and other particulate organic matter, and then, five submerged plant species Elodea canadensis, Vallisneria spiralis, Hydrilla verticillata, Potamogeton lucens, and Potamogeton crispus were transplanted. Water samples were collected monthly to monitor the water quality and to investigate the bioremediation efficiency. Ten months monitoring data showed that in the remediation area, the water body's total nitrogen (TN), ammonium nitrogen (NH4(+)-N), nitrate nitrogen (NO3(-)-N), nitrite nitrogen (NO2(-)-N), total phosphorus (TP), and reactive phosphate (PO4(3-)-P) concentrations and chemical oxygen demand (COD) were significantly lower (P < 0.01), dissolved oxygen (DO) was increased by 50.4%, and the Secchi depth (SD) reached to an average of 3.4-3.7 m. Overall, the water quality was up to grades II or III of state water quality standards for surface water. In March 2008, the established submerged plant community was used to test its effectiveness in improving the eutrophicated water body from Dishui Lake, and the results showed that after 7-day treatment, except biological oxygen demand (BOD), the TN, TP, NO3(-)-N, NO2(-)-N, NH4(+)-N, and PO4(3-)-P concentrations and COD of the eutrophicated water were all decreased significantly, the DO was increased by 17.98%, and the SD was increased by 30 cm. The present study demonstrated the effectiveness of introducing D. magna and transplanting submerged plants in improving the water quality of Dishui Lake.