Microbially Driven Iron Cycling Facilitates Organic Carbon Accrual in Decadal Biochar-Amended Soil.

Soil organic carbon (SOC) is pivotal for both agricultural activities and climate change mitigation, and biochar stands as a promising tool for bolstering SOC and curtailing soil carbon dioxide (CO2) emissions. However, the involvement of biochar in SOC dynamics and the underlying interactions among biochar, soil microbes, iron minerals, and fresh organic matter (FOM, such as plant debris) remain largely unknown, especially in agricultural soils after long-term biochar amendment. We therefore introduced FOM to soils with and without a decade-long history of biochar amendment, performed soil microcosm incubations, and evaluated carbon and iron dynamics as well as microbial properties. Biochar amendment resulted in 2-fold SOC accrual over a decade and attenuated FOM-induced CO2 emissions by approximately 11% during a 56-day incubation through diverse pathways. Notably, biochar facilitated microbially driven iron reduction and subsequent Fenton-like reactions, potentially having enhanced microbial extracellular electron transfer and the carbon use efficiency in the long run. Throughout iron cycling processes, physical protection by minerals could contribute to both microbial carbon accumulation and plant debris preservation, alongside direct adsorption and occlusion of SOC by biochar particles. Furthermore, soil slurry experiments, with sterilization and ferrous iron stimulation controls, confirmed the role of microbes in hydroxyl radical generation and biotic carbon sequestration in biochar-amended soils. Overall, our study sheds light on the intricate biotic and abiotic mechanisms governing carbon dynamics in long-term biochar-amended upland soils.

Ensemble learning algorithms to elucidate the core microbiome's impact on carbon content and degradation properties at the soil aggregate level.

Soil aggregates are crucial for soil organic carbon (OC) accumulation. This study, utilizing a 32-year fertilization experiment, investigates whether the core microbiome can elucidate variations in carbon content and decomposition across different aggregate sizes more effectively than broader bacterial and fungal community analyses. Employing ensemble learning algorithms that integrate machine learning with network inference, we found that the core microbiome accounts for an average increase of 26 % and 20 % in the explained variance of PCoA and Adonis analyses, respectively, in response to fertilization. Compared to the control, inorganic and organic fertilizers decreased the decomposition index (DDI) by 31 % and 38 %, respectively. The fungal core microbiome predominantly influenced OC content and DDI in larger macroaggregates (>2000 µm), explaining over 35 % of the variance, while the bacterial core microbiome had a lesser impact, explaining <30 %. Conversely, in smaller aggregates (<2000 µm), the bacterial core microbiome significantly influenced DDI (R2 > 0.2), and the fungal core microbiome more strongly affected OC content (R2 > 0.3). Mantel tests showed that pH is the most significant environmental factor affecting core microbiome composition across all aggregate sizes (Mantel's r > 0.8, P < 0.01). Linear correlation analysis further confirmed that the core microbiome's community structure could accurately predict OC content and DDI in aggregates (R2 > 0.8, P < 0.05). Overall, our findings suggested that the core microbiome provides deeper insights into the variability of aggregate organic carbon content and decomposition, with the bacterial core microbiome playing a particularly pivotal role within the soil aggregates.

Enhancing remediation efficiency of hyperaccumulators through earthworm addition: Evidence from a pot study on cadmium-contaminated soil.

Soil cadmium (Cd) contamination is an urgent environmental problem, which endangers human health through the food chain. Bioremediation attracted extensive attention around the world due to the high cost-efficiency. However, the remediation efficiency of different plant and earthworm species of soil Cd pollution is still unclear, it is thus of great significance to explore the combined effects of different remediation plants and earthworm species to improve the bioremediation capacity. In the present study, we consequently selected three species of Cd hyperaccumulator plants (vetiver, P. vittata and S. emarginatum) and three species of earthworms (E. fetida P1, E. fetida P2, and P. guillelmi) to compare the differences in Cd accumulation among various earthworm-plant combinations. Results indicated that the changes of soil pH and SOM in plant-animal combined application induced the higher soil Cd removal efficiency. The Cd removal efficiency showed highest in combination groups P. vittata-E. fetida P2 and P. vittata-P. guillelmi. Meanwhile, the improvements of biomass of plants and animals also were consistent with the increasing of Cd concentration in both plants and earthworms after combined application. It showed that the Cd concentrations in P. vittata were the highest while the TFs of Cd in S. emarginatum displays significantly more than that in others. In conclusion, the recommended combined system of earthworm-plant (P. vittata-E. fetida P2 and P. vittata-P. guillelmi) to provide reference for soil Cd bioremediation system in practice.

Amendment-driven soil health restoration through soil pH and microbial robustness in a Cd/Cu-combined acidic soil: A ten-year in-situ field experiment.

Soil health arguably depends on biodiversity and has received wide attention in heavy-metal (HM) contaminated farmland remediation in recent years. However, long-term effects and mechanisms of soil amendment remain poorly understood with respect to soil microbal community. In this in-situ field study, four soil amendments (attapulgite-At, apatite-Ap, montmorillonite-M, lime-L) at three rates were applied once only for ten years in a cadmium (Cd)-copper (Cu) contaminated paddy soil deprecated for over five years. Results showed that after ten years and in compared with CK (no amendment), total Cd concentration and its risk in plot soils were not altered by amendments (p > 0.05), but total Cu concentration and its risk were significantly increased by both Ap and L, especially the former, rather than At and M (p < 0.05), through increased soil pH and enhanced bacterial alpha diversity as well as plant community. Soil microbial communities were more affected by amendment type (30%) than dosage (11%), microbial network characteristics were dominated by rare taxa, and soil multifunctionality was improved in Ap- and L-amended soils. A structural equation model (SEM) indicated that 57.3% of soil multifunctionality variances were accounted for by soil pH (+0.696) and microbial network robustness (-0.301). Moreover, microbial robustness could be potentially used as an indicator of soil multifunctionality, and Ap could be optimized to improve soil health in combined with biomass removal. These findings would advance the understanding of soil microbial roles, especially its network robustness, on soil multifunctionality for the remediation of metal contaminated soils and metal control management strategies in acidic soils. ENVIRONMENTAL IMPLICATION: Farmland soil contamination by heavy metals (HMs) has been becoming a serious global environmental challenge. However, most studies have been conducted over the short term, leading to a gap in the long-term remediation efficiency and ecological benefits of soil amendments. For the successful deployment of immobilization technologies, it is critical to understand the long-term stability of the immobilized HMs and soil health. Our study, to the best of our knowlege, is the first to state the long-term effects and mechanisms of soil amendments on soil health and optimize an effective and eco-friendly amendment for long-term Cd/Cu immobilization.

Evidence for nontraditional mcr-containing archaea contributing to biological methanogenesis in geothermal springs.

Recent discoveries of methyl-coenzyme M reductase-encoding genes (mcr) in uncultured archaea beyond traditional euryarchaeotal methanogens have reshaped our view of methanogenesis. However, whether any of these nontraditional archaea perform methanogenesis remains elusive. Here, we report field and microcosm experiments based on 13C-tracer labeling and genome-resolved metagenomics and metatranscriptomics, revealing that nontraditional archaea are predominant active methane producers in two geothermal springs. Archaeoglobales performed methanogenesis from methanol and may exhibit adaptability in using methylotrophic and hydrogenotrophic pathways based on temperature/substrate availability. A five-year field survey found Candidatus Nezhaarchaeota to be the predominant mcr-containing archaea inhabiting the springs; genomic inference and mcr expression under methanogenic conditions strongly suggested that this lineage mediated hydrogenotrophic methanogenesis in situ. Methanogenesis was temperature-sensitive , with a preference for methylotrophic over hydrogenotrophic pathways when incubation temperatures increased from 65° to 75°C. This study demonstrates an anoxic ecosystem wherein methanogenesis is primarily driven by archaea beyond known methanogens, highlighting diverse nontraditional mcr-containing archaea as previously unrecognized methane sources.

Effects of Soil Amendments on Microbial Activities in a Typical Cd-Contaminated Purple Field Soil, Southwestern China.

In this study, three soil amendments (inorganic, liming, or organic-inorganic materials) were used in a Cd-contaminated purple field soil to investigate their impacts on soil Cd availability, enzyme (urease, catalase, sucrase, and acid phosphatase) activities, microbial biomass (carbon/nitrogen) and type (bacteria, fungi, and actinomycetes) in mustard and corn trials. Results showed that soil amendments generally decreased soil exchangeable Cd, fungi and bacterial populations while increasing the activities of all the four soil enzymes tested, microbial biomass carbon and populations of actinomycetes (p < 0.05). Soil pH and microbial biomass nitrogen did not exhibit any significant response (p > 0.05) whereas stronger effects appeared in soil organic matter and available nutrients (nitrogen, phosphorous and potassium; p < 0.05). However, only soil available phosphorous significantly correlated with soil microbial activity in both mustard and corn trails (p < 0.05). Thus, application of phosphorous-containing amendments should be considered for promoting soil health in the remediation of the Cd-contaminated purple soils.

Effects of simulated Cd deposition on soil Cd availability, microbial response, and crop Cd uptake in the passivation-remediation process of Cd-contaminated purple soil.

Atmospheric deposition of heavy metals such as Cd is a threat to ecosystems and food safety. Our knowledge is still limited about the effectiveness of remediation process for Cd-contaminated agro-soils under atmospheric Cd deposition. In this study, eight soil amendments were used in a Cd-contaminated purple soil to investigate their impacts on soil Cd availability, microbial response, and Cd uptake by mustard and corn plants via simulating the atmospheric Cd deposition under laboratory incubation and greenhouse conditions. Results showed that the simulated atmospheric Cd deposition increased the soil high-risk Cd (HR, exchangeable and carbonate Cd) and decreased soil medium-risk Cd fraction (MR, bound to Fe/Mn oxide and organic Cd), and the largest direct effects on crop Cd uptakes were 0.94 and 0.66 for mustard and corn based on the path-coefficient analysis, respectively. Generally, Cd deposition led to decreasing soil microbial biomass carbon, populations of bacteria, fungi and actinomycetes, and enzyme activities of urease, catalase, sucrase, and acid phosphatase whereas increasing soil microbial biomass nitrogen. Compared with control and lime treatments, an organic-inorganic combined preparation (OCP) appeared to be effective for remediation of the Cd-contaminated purple soil due to its potential to increase the HR-Cd and reduce both MR-Cd and crop Cd uptake, as accompanied by its neutral effects on soil bacterial alpha diversity and community structure. Results also indicated that application of nitrogen fertilizers should be considered for remediation of the Cd-contaminated soils as nitrogen inputs were demonstrated to promote soil health under elevated Cd condition.

Metal wet deposition in the Three Gorges Reservoir (TGR) region of Southwest China.

Metal wet deposition has become an environmental concern because of its threats to soil or water quality and human health. This study was to collect rainfall waters in 2016 from seven sites, representing urban, town, rural, and wetland, within the Three Gorges Reservoir (TGR) region of Southwest China, determine the metal concentration and flux (Zn, Mn, Cu, As, Cd, Pb), and identify their possible sources. Results indicated that Zn was the most abundant metal with a concentration of 16.92 µg L-1 in fall and 19.91 µg L-1 in winter and flux of 4.71 mg m-2 in fall, while Cd was the least with a monthly mean concentration of 0.02-0.37 µg L-1. Among the seven sites, urban (FL) had the highest values of both concentrations of metals (Zn, Cu, Pb) and fluxes of metals (Mn, As), which significantly differed from the other sites. Component and redundancy analysis suggested that fossil fuel and biomass combustion be a potential metal source. Enrichment factors, box model, and potential ecological risk index showed that the TGR water quality could face a high risk due to wet metal deposition, especially Cd. Data could provide a valuable aid in mitigating metal pollution, developing the best watershed management practices, as well as safeguarding water quality and human health in the TGR region or other reservoir regions.

A comparison of various approaches used in source apportionments for precipitation nitrogen in a mountain region of southwest China.

Six different approaches are applied in the present study to apportion the sources of precipitation nitrogen making use of precipitation data of dissolved inorganic nitrogen (DIN, including NO3- and NH4+), dissolved organic nitrogen (DON) and δ15N signatures of DIN collected at six sampling sites in the mountain region of Southwest China. These approaches include one quantitative approach running a Bayesian isotope mixing model (SIAR model) and five qualitative approaches based on in-situ survey (ISS), ratio of NH4+/NO3- (RN), principal component analysis (PCA), canonical-correlation analysis (CCA) and stable isotope approach (SIA). Biomass burning, coal combustion and mobile exhausts in the mountain region are identified as major sources for precipitation DIN while biomass burning and volatilization sources such as animal husbandries are major ones for DON. SIAR model results suggest that mobile exhausts, biomass burning and coal combustion contributed 25.1 ±â€¯14.0%, 26.0 ±â€¯14.1% and 27.0 ±â€¯12.6%, respectively, to NO3- on the regional scale. Higher contributions of both biomass burning and coal combustion appeared at rural and urban sites with a significant difference between Houba (rural) and the wetland site (p < 0.05). The RN method fails to properly identify sources of DIN, the ISS and SIA approach only respectively identifies DON and DIN sources, the PCA only tracks source types for precipitation N, while the CCA identify sources of both DIN and DON in precipitation. SIAR quantified the contributions of major sources to precipitation NO3- but failed for precipitation NH4+ and DON. It is recommended to use ISS and SIAR in combination with one or more approaches from PCA, CCA and SIA to apportion precipitation NO3- sources. As for apportioning precipitation NH4+ sources, more knowledge is needed for local 15N databases of NH3 and DON and 15N fractional mechanisms among gaseous, liquid and particulate surfaces in this mountain region and similar environments.

Increasing atmospheric deposition nitrogen and ammonium reduced microbial activity and changed the bacterial community composition of red paddy soil.

Atmospheric deposition nitrogen (ADN) increases the N content in soil and subsequently impacts microbial activity of soil. However, the effects of ADN on paddy soil microbial activity have not been well characterized. In this study, we studied how red paddy soil microbial activity responses to different contents of ADN through a 10-months ADN simulation on well managed pot experiments. Results showed that all tested contents of ADN fluxes (27, 55, and 82kgNha-1 when its ratio of NH4+/NO3--N (RN) was 2:1) enhanced the soil enzyme activity and microbial biomass carbon and nitrogen and 27kgNha-1 ADN had maximum effects while comparing with the fertilizer treatment. Generally, increasing of both ADN flux and RN (1:2, 1:1 and 2:1 with the ADN flux of 55kgNha-1) had similar reduced effects on microbial activity. Furthermore, both ADN flux and RN significantly reduced soil bacterial alpha diversity (p<0.05) and altered bacterial community structure (e.g., the relative abundances of genera Dyella and Rhodoblastus affiliated to Proteobacteria increased). Redundancy analysis demonstrated that ADN flux and RN were the main drivers in shaping paddy soil bacteria community. Overall, the results have indicated that increasing ADN flux and ammonium reduced soil microbial activity and changed the soil bacterial community. The finding highlights how paddy soil microbial community response to ADN and provides information for N management in paddy soil.

Wet-only deposition of atmospheric inorganic nitrogen and associated isotopic characteristics in a typical mountain area, southwestern China.

To quantify and compare atmospheric nitrogen (N) deposition and its N isotopic ratio are critical for constraining N sources and effective reduction of reactive N emissions. In this study, a total of 223 rainwater samples were collected by wet-only auto-samplers, and wet-only deposition and isotopic composition (δ15N) of reduced (NH4+-N) and oxidized (NO3--N) N were measured at three typical mountain sites, including an urban (Wanzhou, WZ), a town (Gaoyang, GY) and a rural (Dade, DD) site in Chongqing, southwestern China in 2016. The wet-only inorganic N deposition (DIN, sum of NO3--N and NH4+-N) were 17.50, 8.63 and 12.16kgNha-1yr-1 at WZ, GY and DD site, respectively. Annual δ15N-NH4+ values of rainwaters were negative at the urban site (-3.12±3.21‰, WZ) and positive at both town and rural site (0.65±12.51‰, GY; 2.16±6.11‰, DD). Annual δ15N-NO3- values, on the contrary, were positive at the urban site (0.33±7.87‰, WZ) and negative at both town and rural site (-5.59±2.20‰, GY; -0.39±8.89‰, DD). These results reveal the urban site was wet-only DIN hotspot and had a different N source compared with the town-rural site in the mountain area. Moreover, precipitation DIN had a potentially negative risk on both aquatic and forest ecosystems.

Impact of socioeconomic and meteorological factors on reservoirs' air quality: a case in the Three Gorges Reservoir of Chongqing (TGRC), China over a 10-year period.

The Three Gorges Dam's construction and industrial transfer have resulted in a new air pollution pattern with the potential to threaten the reservoir eco-environment. To assess the impact of socioeconomic factors on the pattern of air quality vairation and economical risks, concentrations of SO2, NO2, and PM10, industry genres, and meteorological conditions were selected in the Three Gorges Reservoir of Chongqing (TGRC) during 2006-2015. Results showed that air quality had improved to some extent, but atmospheric NO2 showed an increased trend during 2011-2015. Spatially, higher atmospheric NO2 extended to the surrounding area. The primary industry, especially for agriculture, had shown to be responsible for the remarkable increase of atmospheric NO2 (p < 0.01) due to the direct burning of agricultural straws and the emission of livestock breeding. The improvement of regional industrial structure and industrialization benefited air pollutant reductions, but construction industries had inhibited the improvement of regional air quality. In the tertiary industry, the cargo industry at ports had significantly decreased atmospheric NO2 as a result of eliminating the obsoleted small ships. Contrarily, the highway transportation had brought more air pollutants. The relative humidity was shown to be the main meteorological factor, which had an extremely remarkable relation with atmospheric SO2 (p < 0.01) and a significant correlation with atmospheric NO2 (p < 0.05), respectively. In the future, the development of agriculture and livestock breeding would make regional air quality improvement difficult, and atmospheric SO2, NO2, and PM10 deposition would aggravate regional soil and water acidification and reactivate heavy metal in soil and sediment, further to pose a high level of ecological risk in the TGRC and other countries with reservoirs in the world.