Pyrolysis comprehensive gas chromatography and mass spectrometry: A new tool to assess the purity of ancient collagen prior to radiocarbon dating.

Exogenous carbonaceous contaminants coming from sediments significantly bias the radiocarbon date of collagen samples extracted from archaeological bone and teeth. In this study, a new approach combining pyrolysis, comprehensive gas chromatography and mass spectrometry (Py-GC × GC/MS) was proposed to ensure their removal during the demineralization and bone collagen extraction. This approach permitted to identify hydrocarbon contaminants for archaeological samples from the Neolithic period, in 30-40 µg of collagen. The use of 2D GC improved importantly the separation, selectivity and resolution compared to 1D GC thus permitting to detect organic contaminants within the complex chromatograms issued from collagen pyrolysis. Moreover, efficiency of the extraction steps in collagen sample preparation for radiocarbon dating (acid and alkali treatments, filtration steps) could be evaluated for four different protocols on the basis of organic contaminant removal. Radiocarbon dating of the extracted collagen of four of the tested protocols corroborated the results of the Py GC × GC/MS data. This approach opens new perspectives for the use of comprehensive gas chromatography in the domain of archaeological sciences.

General rules of fragmentation evidencing lasso structures in CID and ETD.

Lasso peptides constitute a structurally unique class of ribosomally synthesized and post-translationally modified peptides (RiPPs) characterized by a mechanically interlocked structure in which the C-terminal tail of the peptide is threaded and trapped within an N-terminal macrolactam ring. Tandem mass spectrometry using collision induced dissociation (CID) and electron capture dissociation (ECD) have shown previously different fragmentation patterns for capistruin, microcin J25 and their corresponding branched-cyclic forms in which the C-terminal tail is unthreaded. In order to develop general rules that unambiguously discriminate the lasso and branched-cyclic topologies, this report presents experimental evidence for a set of twenty-one lasso peptides analyzed by CID and electron transfer dissociation (ETD). CID experiments on lasso peptides specifically yielded mechanically interlocked species with associated bi and yj fragments. For class II lasso peptides, these lasso-specific fragments were observed only for peptides in which the loop, located above the macrolactam ring, was strictly longer than four amino acid residues. For class I and III lasso peptides, part of the C-terminal tail remains covalently linked to the macrolactam ring by disulfide bonds; associated bi and yj fragments therefore do not clearly constitute a signature of the lasso topology. ETD experiments of lasso peptides showed a significant increase of hydrogen migration events in the loop region when compared to their branched-cyclic topoisomers, leading to the formation of specific ci˙/z'j fragments for all lasso peptides, regardless of their class and loop size. Our experiments enabled us to establish general rules for obtaining structural details from CID and ETD fragmentation patterns, obviating the need for structure determination by NMR or X-ray crystallography.

Radiocarbon dating minute amounts of bone (3-60 mg) with ECHoMICADAS.

Because hard tissues can be radiocarbon dated, they are key to establishing the archaeological chronologies, palaeoenvironmental reconstructions and historical-biogeographical processes of the last 50,000 years. The advent of accelerator mass spectrometers (AMS) has revolutionized the field of archaeology but routine AMS dating still requires 60-200 mg of bone, which far exceeds that of small vertebrates or remains which hold a patrimonial value (e.g. hominid remains or worked bone artefacts). Here, we present the first radiocarbon dates obtained from minute amounts of bone (3-60 mg) using a MIni CArbon DAting System (MICADAS). An optimized protocol allowed us to extract enough material to produce between 0.2 and 1.0 mg of carbon for graphite targets. Our approach was tested on known-age samples dating back to 40,000 BP, and served as proof of concept. The method was then applied to two archaeological sites where reliable dates were obtained from the single bones of small mammals. These results open the way for the routine dating of small or key bone samples.

Zinc binding to Alzheimer's Abeta(1-16) peptide results in stable soluble complex.

Aggregation of the human amyloid beta-peptide (Abeta) into insoluble plaques is a key event in Alzheimer's disease. Zinc sharply accelerates the Abeta aggregation in vitro, and the Abeta region 6-28 was suggested to be the obligatory zinc binding site. However, time-dependent aggregation of the zinc-bound Abeta species investigated so far prevented their structural analysis. By using CD spectroscopy, we have shown here for the first time that (i) the protected synthetic peptide spanning the fragment 1-16 of Abeta binds specifically zinc with 1:1 and 1:2 stoichiometry under physiologically relevant conditions; (ii) the peptide-zinc complex is soluble and stable for several months; (iii) zinc binding causes a conformational change of the peptide towards a more structured state. These findings suggest the region 1-16 to be the minimal autonomous zinc binding domain of Abeta.