Pedological formations on old mountain geomorphological surfaces of central Spain.

The chemo-morphological properties of soils on ancient landforms (quarzitic pliocene alluvial fans, pleistocene terraces), namely "rañizos", on middle-high mountains (Eastern-Central System, Iberian Peninsula, Rio Negro, Cogolludo) were investigated. Several properties were analyzed by standard procedures. A detailed soil diagnostics and classification on "rañizos" were done, unlike those widely studied on "rañas" (similar landform), by identifying parallel pedogenetic processes in both formations. The genetic and geographic features of Alfisols, Ultisols and Inceptisols are closely related to the nature of their parent materials, based on quartzite and quartz conglomerates, sometimes with an arkosic matrix, red shale, polygenic gravels and pebbles. Soil features were determined by genuine soil-forming inherent lithological rock properties. Other driving factors were flat topography and enough soil formation time to allow intense pedogenesis. The main soil-forming processes were intense weathering, clay enrichment horizons with illuviation, red color caused by iron oxide dehydration and signs of pseudogleyzation processes. Such pedological formations can be considered endemisms; that is, "rare" soils and, up to a point, "relict". The soil reaction is acid/slightly acid with low base saturation. Despite lying on mountains, soils are characterized by moderate-low organic matter content. Soil conditions and climate provide good vine production requirements despite acidity levels. A common feature of all Rio Negro soils is the presence of gravel (size up to 3-5 cm), which is evenly distributed on arable layers. The results can be used to assess vineyard soil use in a potential Pago (Protected Denomination of Origin) and to extend the database of vineyard soils from poorly studied Mediterranean continental mountain regions.

Transcriptional survey of abiotic stress response in maize (Zea mays) in the level of gene co-expression network and differential gene correlation analysis.

Abstract. Maize may be exposed to several abiotic stresses in the field. Therefore, identifying the tolerance mechanisms of natural field stress is mandatory. Gene expression data of maize upon abiotic stress were collected, and 560 differentially expressed genes (DEGs) were identified through meta-analysis. The most significant gene ontology terms in up-regulated genes were 'response to abiotic stress' and 'chitinase activity'. 'Phosphorelay signal transduction system' was the most significant enriched biological process in down-regulated DEGs. The co-expression analysis unveiled seven modules of DEGs, with a notable positive correlation between the modules and abiotic stress. Furthermore, the statistical significance was strikingly high for the turquoise, green and yellow modules. The turquoise group played a central role in orchestrating crucial adaptations in metabolic and stress response pathways in maize when exposed to abiotic stress. Within three up-regulated modules, Zm.7361.1.A1_at, Zm.10386.1.A1_a_at and Zm.10151.1.A1_at emerged as hub genes. These genes might introduce novel candidates implicated in stress tolerance mechanisms, warranting further comprehensive investigation and research. In parallel, the R package glmnet was applied to fit a logistic LASSO regression model on the DEGs profile to select candidate genes associated with abiotic responses in maize. The identified hub genes and LASSO regression genes were validated on an independent microarray dataset. Additionally, Differential Gene Correlation Analysis (DGCA) was performed on LASSO and hub genes to investigate the gene-gene regulatory relationship. The P value of DGCA of 16 pairwise gene comparisons was lower than 0.01, indicating a gene-gene significant change in correlation between control and abiotic stress. Integrated weighted gene correlation network analysis and logistic LASSO analysis revealed Zm.11185.1.S1_at, Zm.2331.1.S1_x_at and Zm.17003.1.S1_at. Notably, these 3 genes were identified in the 16 gene-pair comparisons. This finding highlights the notable significance of these genes in the abiotic stress response. Additional research into maize stress tolerance may focus on these three genes.

Protein Phosphorylation Orchestrates Acclimations of Arabidopsis Plants to Environmental pH.

Environment pH (pHe) is a key parameter dictating a surfeit of conditions critical to plant survival and fitness. To elucidate the mechanisms that recalibrate cytoplasmic and apoplastic pH homeostasis, we conducted a comprehensive proteomic/phosphoproteomic inventory of plants subjected to transient exposure to acidic or alkaline pH, an approach that covered the majority of protein-coding genes of the reference plant Arabidopsis thaliana. Our survey revealed a large set-of so far undocumented pHe-dependent phospho-sites, indicative of extensive post-translational regulation of proteins involved in the acclimation to pHe. Changes in pHe altered both electrogenic H+ pumping via P-type ATPases and H+/anion co-transport processes, putatively leading to altered net trans-plasma membrane translocation of H+ ions. In pH 7.5 plants, the transport (but not the assimilation) of nitrogen via NRT2-type nitrate and AMT1-type ammonium transporters was induced, conceivably to increase the cytosolic H+ concentration. Exposure to both acidic and alkaline pH resulted in a marked repression of primary root elongation. No such cessation was observed in nrt2.1 mutants. Alkaline pH decreased the number of root hairs in the wild type but not in nrt2.1 plants, supporting a role of NRT2.1 in developmental signaling. Sequestration of iron into the vacuole via alterations in protein abundance of the vacuolar iron transporter VTL5 was inversely regulated in response to high and low pHe, presumptively in anticipation of associated changes in iron availability. A pH-dependent phospho-switch was also observed for the ABC transporter PDR7, suggesting changes in activity and, possibly, substrate specificity. Unexpectedly, the effect of pHe was not restricted to roots and provoked pronounced changes in the shoot proteome. In both roots and shoots, the plant-specific TPLATE complex components AtEH1 and AtEH2-essential for clathrin-mediated endocytosis-were differentially phosphorylated at multiple sites in response to pHe, indicating that the endocytic cargo protein trafficking is orchestrated by pHe.

Weed Species from Tea Gardens as a Source of Novel Aluminum Hyperaccumulators.

Increased availability of toxic Al3+ is the main constraint limiting plant growth on acid soils. Plants adapted to acid soils, however, tolerate toxic Al3+, and some can accumulate Al in their aerial parts to a significant degree. Studies on Al-tolerant and Al-accumulating species have mainly focused on the vegetation of acid soils distributed as two global belts in the northern and southern hemispheres, while acid soils formed outside these regions have been largely neglected. The acid soils (pH 3.4-4.2) of the tea plantations in the south Caspian region of Northern Iran were surveyed over three seasons at two main locations. Aluminum and other mineral elements (including nutrients) were measured in 499 plant specimens representing 86 species from 43 families. Al accumulation exceeding the criterion for accumulator species (>1000 µg g-1 DW) was found in 36 species belonging to 23 families of herbaceous annual or perennial angiosperms, in addition to three bryophyte species. Besides Al, Fe accumulation (1026-5155 µg g-1 DW) was also observed in the accumulator species that exceeded the critical toxicity concentration, whereas no such accumulation was observed for Mn. The majority of analyzed accumulator plants (64%) were cosmopolitan or pluriregional species, with a considerable rate of Euro-Siberian elements (37%). Our findings, which may contribute to phylogenetic studies of Al accumulators, also suggest suitable accumulator and excluder species for the rehabilitation of acid-eroded soils and introduce new model species for investigating Al accumulation and exclusion mechanisms.

Influence of dicarboxylic acid polymer in enhancing the growth and productivity of sweet potato (Ipomoea batatas L.) in acidic soil.

The available phosphorus (P) in acid sulfate soils (ASSs) is low because of fixation by aluminum (Al) and iron (Fe), resulting in decreased P use efficiency and crop yield. At present, the use of dicarboxylic acid polymer (DCAP) coated on P fertilizer is expected to improve P use efficiency and plant productivity. However, the influence of DCAP on P solubility and on the yield of sweet potato cultivated in acidic soils has not been elucidated. Thus, the aimed of this study was to evaluate the effect of the use of DCAP-coated P fertilizer on the availability and nutrient uptake of P as well as the yield of sweet potato. Under the greenhouse condition, the use of DCAP significantly improved P availability (~3 mg P kg-1), increasing tuber diameter and length by ~0.5 and ~1.0 cm, respectively. Thus, the productivity of sweet potato in the treatment 40-kg P2O5 and 60-kg P2O5 ha-1 coated with DCAP was higher by about 100 g pot-1 than that in the same rate of P fertilizers (40- and 60-kg P2O5 ha-1) not coated with DCAP. In the field experiment, P accumulation (82.7 kg P2O5 ha-1) and tuber yield (22.0 t ha-1) in the treatment of DCAP-coated with 60-kg P2O5 ha-1 were not significantly different compared with that in the treatment of 80-kg P2O5 ha-1 (82.1 kg P2O5 and 21.7 t ha-1, respectively). Furthermore, the use of DCAP combined with 75% P fertilizer increased the P availability by the same amount as that with the use of 100% P fertilizer. Hence, the use of DCAP reduced about 25% of the chemical P fertilizer applied in soil.

The effect of aluminum treatment on metabolism in oil palm seedlings

Due to rainfall and high temperatures, the Amazonian soil undergoes changes in its source material and leaching of base cations. This results in deep, infertile, and acidic soil. Aluminum present in acidic soil impairs plant growth and development by inhibiting root formation, enzymatic reactions, absorption, transport, and nutrient utilization. This study aimed to evaluate the effects of aluminum dosage on the metabolism of the oil palm Elaeis guineensis Jacq. The study was conducted in a greenhouse at the Federal Rural University of Amazonia. The experimental design was randomized, with five replications, in which dosages of 0, 10, 20, 30, and 40 mg L-1 aluminum chloride (AlCl3.6H2O) were administered. Electrolyte leakage, nitrate, nitrate reductase, free ammonium, soluble amino acids, proline content, and soluble proteins were analyzed in the leaves and roots of the oil palm. The highest concentration of aluminum was found in the roots. AlCl3 treatment at 40 mg L-1 increased electrolyte leakage, nitrate, ammonium, and proline concentrations in the roots, and amino acid concentrations in both the leaves and roots. Furthermore, a decrease in nitrate reductase enzyme activity was observed in the roots. This study demonstrates that the oil palm has mechanisms of tolerance to aluminum toxicity.

Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils.

Five genes of large phenotypic effect known to confer abiotic stress tolerance in rice were selected to characterize allelic variation in commercial Colombian tropical japonica upland rice cultivars adapted to drought-prone acid soil environments (cv. Llanura11 and Porvenir12). Allelic variants of the genes ART1, DRO1, SUB1A, PSTOL1, and SPDT were characterized by PCR and/or Sanger sequencing in the two upland cultivars and compared with the Nipponbare and other reference genomes. Two genes were identified as possible targets for gene editing: SUB1A (Submergence 1A), to improve tolerance to flooding, and SPDT (SULTR3;4) (SULTR-like Phosphorus Distribution Transporter), to improve phosphorus utilization efficiency and grain quality. Based on technical and regulatory considerations, SPDT was targeted for editing. The two upland cultivars were shown to carry the SPDT wild-type (nondesirable) allele based on sequencing, RNA expression, and phenotypic evaluations under hydroponic and greenhouse conditions. A gene deletion was designed using the CRISPR/Cas9 system, and specialized reagents were developed for SPDT editing, including vectors targeting the gene and a protoplast transfection transient assay. The desired edits were confirmed in protoplasts and serve as the basis for ongoing plant transformation experiments aiming to improve the P-use efficiency of upland rice grown in acidic soils.

The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.

Although Medicago sativa forms highly effective symbioses with the comparatively acid-sensitive genus Ensifer, its introduction into acid soils appears to have selected for symbiotic interactions with acid-tolerant R. favelukesii strains. Rhizobium favelukesii has the unusual ability of being able to nodulate and fix nitrogen, albeit sub-optimally, not only with M. sativa but also with the promiscuous host Phaseolus vulgaris. Here we describe the genome of R. favelukesii OR191 and genomic features important for the symbiotic interaction with both of these hosts. The OR191 draft genome contained acid adaptation loci, including the highly acid-inducible lpiA/acvB operon and olsC, required for production of lysine- and ornithine-containing membrane lipids, respectively. The olsC gene was also present in other acid-tolerant Rhizobium strains but absent from the more acid-sensitive Ensifer microsymbionts. The OR191 symbiotic genes were in general more closely related to those found in Medicago microsymbionts. OR191 contained the nodA, nodEF, nodHPQ, and nodL genes for synthesis of polyunsaturated, sulfated and acetylated Nod factors that are important for symbiosis with Medicago, but contained a truncated nodG, which may decrease nodulation efficiency with M. sativa. OR191 contained an E. meliloti type BacA, which has been shown to specifically protect Ensifer microsymbionts from Medicago nodule-specific cysteine-rich peptides. The nitrogen fixation genes nifQWZS were present in OR191 and P. vulgaris microsymbionts but absent from E. meliloti-Medicago microsymbionts. The ability of OR191 to nodulate and fix nitrogen symbiotically with P. vulgaris indicates that this host has less stringent requirements for nodulation than M. sativa but may need rhizobial strains that possess nifQWZS for N2-fixation to occur. OR191 possessed the exo genes required for the biosynthesis of succinoglycan, which is required for the Ensifer-Medicago symbiosis. However, 1H-NMR spectra revealed that, in the conditions tested, OR191 exopolysaccharide did not contain a succinyl substituent but instead contained a 3-hydroxybutyrate moiety, which may affect its symbiotic performance with Medicago hosts. These findings provide a foundation for the genetic basis of nodulation requirements and symbiotic effectiveness with different hosts.

Microorganism community composition analysis coupling with 15N tracer experiments reveals the nitrification rate and N2O emissions in low pH soils in Southern China.

Nitrification in agricultural soil is an important process for food production. In acidic soil, nitrification is however also considered to be a major source of N2O production. The nitrification rate largely depends on the community composition of ammonia-oxidizing organisms. To obtain a view of the nitrification rates and N2O emission situations in low pH soils in Southern China and understand their relations with the microbial community composition, here we conducted 15N tracer experiments and microorganism community composition analysis using four acidic agricultural soil samples collected in Southern China. A single dominant community (relative abundance >68%) of the ammonia-oxidizing bacteria and ammonia-oxidizing archaea was observed in the soils with pH = 4.81-6.02. A low amount of NO 3 - was produced from the nitrification in the strongly acidic soil (pH = 4.03), and the calculated nitrification rate in this soil was significantly lower than those of other soils with pH = 4.81-6.02. High N2O emissions but low 15N-N2O emissions were observed in the soil with pH = 4.03. Our results suggest that, under aerobic conditions, soil pH is an important factor affecting nitrification through modifying the microorganism composition.

Optimization of soybean yield in ultisols through adaptive varieties screening and plant growth promoting Rhizobacter

This research was aimed at obtaining varieties of soybean adaptive to acid soils and to obtain Plant Growth-Promoting Rhizobacteria (PGPR) isolates that can improve the agronomic characteristics of soybean and increase the ultisols fertility. This research was conducted in two-stages research on Sampali Village, Percut Sei Tuan sub-District, Deli Serdang District, North Sumatra Province, Indonesia from August 2019 until March 2020. The first stage (adaptive varieties screening) using the non-factorial Randomized Block Design (RBD) with the varieties of Argomulyo, Wilis, Kaba, Dena-1, Devon-1, Dega-1, Demas-1, Burangrang, Detam-1, and Kipas Merah. The second stage (application of PGPR isolates singly and in combinations) using the factorial RBD, the first factor of applicative single and the combination of PGPR isolates, the second factor of adaptive varieties including Detam-1 and Wilis. Data were analyzed with ANOVA and followed by DMRT at P<0.05. The results showed that the Detam-1 and Wilis varieties had significantly higher yield per plant of 14.73 g and 14.54 g, respectively, than other varieties. The applications of a single and combination of PGPR isolates significantly increased the number of branches, stem diameter, plant height, yield per plant, soil pH, organic-C, available-P, and total-N and decreased the soil C/N. The Detam-1 variety had the higher in yield per plant compared to Wilis variety. The isolates combination of Rhizobium leguminosarum+Rhizobium sp2+Bacillus sp+Burkholderia sp for Detam-1 and Wilis varieties can be recommended to support the growth and yield of soybean on ultisols.

Efecto del pH sobre la concentración de nutrientes en cacao (Theobroma cacao L.) en la Amazonia Colombiana / Effect of pH on the nutrient concentration in cocoa (Theobroma cacao L.) in the Colombian Amazon

RESUMEN La acidez del suelo limita la disponibilidad, la absorción y la concentración de nutrientes y el rendimiento del cultivo de cacao. El objetivo fue evaluar el efecto del pH del suelo sobre la concentración de nutrientes en hoja, cáscara y grano, para cuatro clones de cacao autocompatibles (ICS-1, CCN-51) y autoincompatibles (ICS-39, TSH-565), en el departamento del Caquetá. El diseño experimental consistió en un arreglo factorial con cuatro clones (factor A), cuatro niveles de pH y fertilidad (factor B) y cuatro repeticiones. Los resultados indican diferencias en la concentración de nutrientes por efecto del clon y tratamiento, siendo la acumulación de N, P y Mg en grano>hoja>cáscara, K en cáscara>hoja>grano, Ca, Fe, Mn, Zn y B en hoja>cáscara>grano, S en cáscara>hoja>grano y Cu en grano>cáscara>hoja. La concentración de P, Mg y S fue mayor y, a su vez, menor Mn, cuando aumentó el pH. El orden de extracción nutrimental en grano fue N>K>P>Mg>S>Ca>Fe>Mn>Zn>Cu>B. Con relación a los clones, CCN-51 presentó habilidad para la toma de nutrientes y alcanzar mayores producciones, incluso, en suelos con pH ≥ 5,5, lo que sugiere efecto de las condiciones edafoclimáticas y, por lo tanto, la necesidad de evaluar los clones para cada zona de cultivo.

ABSTRACT The soil acidity limits availability, absorption and concentration of nutrients and yield of the cocoa crop. The objective was to evaluate the effect of soil pH on the concentration of macro and micronutrients in leaf, husk and grain for four cocoa clones, self-compatible (ICS-1, CCN-51) and self-incompatible (ICS-39, TSH-565) in the department of Caquetá. The experimental design consisted in a factorial arrangement with four clones (factor A), four pH and fertility levels (factor B) and four repetitions. The results indicate differences in the concentration of nutrients due to the effect of the clone and the treatment, being the accumulation of N, P and Mg in grain>leaf>husk, K in husk>leaf>grain, Ca, Fe, Mn, Zn y B in leaf>husk>grain, S in husk>leaf>grain and Cu in grain>husk>leaf. The concentration of P, Mg and S was higher, and in turn Mn lower, when the pH increased. The order of nutrient extraction in grain was N>K>P>Mg>S>Ca>Fe>Mn>Zn>Cu>B. Regarding clones, CCN-51 showed ability to take nutrients and reach higher productions, even in soils with pH ≥ 5.5, suggesting effect of edaphoclimatic conditions, and therefore, the need to evaluate the clones for each growing area.

Morphological Characterization of the In Vitro Mycorrhizae Formed between Four Terfezia Species (Pezizaceae) with Cistus salviifolius and Cistus ladanifer-Towards Desert Truffles Production in Acid Soils.

Terfezia species are obligate symbiotic partners of several xerophytic host plants, mainly belonging to the Cistaceae. Yet, their mycorrhizal associations with members of the genus Cistus remain poorly characterized and their potential application in desert truffle cultivation remains unexplored. This work provides the first anatomic descriptions of the mycorrhizae formed in vitro by four Terfezia species (i.e., T. arenaria; T. extremadurensis; T. fanfani, T. pini) with C. ladanifer and C. salviifolius, two of the most widespread and common Cistus species in acidic soils. All the tested associations resulted in the formation of ectomycorrhizae with well-developed Hartig net, but with a varying degree of mantle development. Our results also demonstrate that all the experimented Terfezia-Cistus combinations expressed high mycorrhization rates. Moreover, the present work shows that C. salviifolius and C. ladanifer are suitable plant hosts for Terfezia species, including some that are, to date, known to be only associated with annual herbs or tree species. This new evidence might aid in broadening the number of situations whereby Terfezia spp. can be cultivated in acid soils.

Aluminum toxicity in plants and its possible mitigation in acid soils by biochar: A review.

Toxicity of aluminum (Al) is a serious problem for agricultural plants, especially due to excessive soil acidification caused by continuous intensive agriculture and modified environmental conditions related with global climate change. Decreased root elongation and shoot growth, reduced biomass production, nutrient imbalance and altered physiological and metabolic processes are responsible for lower yield and crop quality and therefore, decreased variability and productivity of the land. Recently, biochar is gaining popularity for ameliorating metal toxicity in soils. However, there is a lack of comprehensive information regarding the effects of biochar and its functioning. Multiple mechanisms are involved in ameliorating Al toxicity in which inherent properties of biochar influencing Al adsorption, absorption, complexation, cation exchange and electrostatic interaction are considered to play major roles. Modification of biochar to enhance these mechanisms might hold the key for long term solution. Present review indicates gaps for further research. Long term field studies are needed to understand the effects of biochar on Al toxicity.

A new genome allows the identification of genes associated with natural variation in aluminium tolerance in Brachiaria grasses.

Toxic concentrations of aluminium cations and low phosphorus availability are the main yield-limiting factors in acidic soils, which represent half of the potentially available arable land. Brachiaria grasses, which are commonly sown as forage in the tropics because of their resilience and low demand for nutrients, show greater tolerance to high concentrations of aluminium cations (Al3+) than most other grass crops. In this work, we explored the natural variation in tolerance to Al3+ between high and low tolerant Brachiaria species and characterized their transcriptional differences during stress. We identified three QTLs (quantitative trait loci) associated with root vigour during Al3+ stress in their hybrid progeny. By integrating these results with a new Brachiaria reference genome, we identified 30 genes putatively responsible for Al3+ tolerance in Brachiaria. We observed differential expression during stress of genes involved in RNA translation, response signalling, cell wall composition, and vesicle location homologous to aluminium-induced proteins involved in limiting uptake or localizing the toxin. However, there was limited regulation of malate transporters in Brachiaria, which suggests that exudation of organic acids and other external tolerance mechanisms, common in other grasses, might not be relevant in Brachiaria. The contrasting regulation of RNA translation and response signalling suggests that response timing is critical in high Al3+-tolerant Brachiaria.

Root Adaptation via Common Genetic Factors Conditioning Tolerance to Multiple Stresses for Crops Cultivated on Acidic Tropical Soils.

Crop tolerance to multiple abiotic stresses has long been pursued as a Holy Grail in plant breeding efforts that target crop adaptation to tropical soils. On tropical, acidic soils, aluminum (Al) toxicity, low phosphorus (P) availability and drought stress are the major limitations to yield stability. Molecular breeding based on a small suite of pleiotropic genes, particularly those with moderate to major phenotypic effects, could help circumvent the need for complex breeding designs and large population sizes aimed at selecting transgressive progeny accumulating favorable alleles controlling polygenic traits. The underlying question is twofold: do common tolerance mechanisms to Al toxicity, P deficiency and drought exist? And if they do, will they be useful in a plant breeding program that targets stress-prone environments. The selective environments in tropical regions are such that multiple, co-existing regulatory networks may drive the fixation of either distinctly different or a smaller number of pleiotropic abiotic stress tolerance genes. Recent studies suggest that genes contributing to crop adaptation to acidic soils, such as the major Arabidopsis Al tolerance protein, AtALMT1, which encodes an aluminum-activated root malate transporter, may influence both Al tolerance and P acquisition via changes in root system morphology and architecture. However, trans-acting elements such as transcription factors (TFs) may be the best option for pleiotropic control of multiple abiotic stress genes, due to their small and often multiple binding sequences in the genome. One such example is the C2H2-type zinc finger, AtSTOP1, which is a transcriptional regulator of a number of Arabidopsis Al tolerance genes, including AtMATE and AtALMT1, and has been shown to activate AtALMT1, not only in response to Al but also low soil P. The large WRKY family of transcription factors are also known to affect a broad spectrum of phenotypes, some of which are related to acidic soil abiotic stress responses. Hence, we focus here on signaling proteins such as TFs and protein kinases to identify, from the literature, evidence for unifying regulatory networks controlling Al tolerance, P efficiency and, also possibly drought tolerance. Particular emphasis will be given to modification of root system morphology and architecture, which could be an important physiological "hub" leading to crop adaptation to multiple soil-based abiotic stress factors.

Si-Ca-K-Mg amendment reduces the phytoavailability and transfer of Cd from acidic soil to rice grain.

Cadmium (Cd) contamination in the soil-rice chain is the major threat to human health in China. It is very necessary to lower Cd phytoavailability in contaminated soils and reduce Cd transfer from soil to rice for food safety. This study applied the Si-Ca-K-Mg amendment (SCKM) to immobilize Cd in acidic soils and then reduce its accumulation in rice grain (Oryza sativa L.). Two agricultural soils (Alfisol and Ultisol) collected from Eastern China were treated with three levels of Cd concentration (0, 0.4, and 2.0 mg/kg), respectively, for pot experiment. The phytoavailability and chemical forms of Cd in two soils were determined using ethylenediaminetetraacetic acid (EDTA) and the European Community Bureau of Reference (BCR) extraction procedures. At 2.0 mg Cd/kg-treated soils, application of SCKM amendment increased the yield of rice grain by 10-17% for Alfisol and 14-39% for Ultisol, and reduced the concentrations of EDTA-extractable Cd by 6-27% for Alfisol and 5-25% for Ultisol, compared with treatment without amendment. SCKM amendment significantly (p < 0.05) reduced the bioconcentration factor (BCF) of Cd in root, straw, and grain of rice. Compared with treatment without amendment, the application of amendments decreased the Cd concentrations of rice grains by 35-76% for Alfisol and 31-72% for Ultisol, respectively. The BCR sequential extraction revealed that amendment reduced acid soluble Cd fraction by 6.2-13.6% for Alfisol and 6.1-13.5% for Ultisol, respectively, indicating that amendment could effectively transform the highly phytoavailable Cd into a more stable form. SCKM amendment addition significantly (p < 0.05) increased soil pH and exchangeable K+, and decreased exchangeable Al3+ contents in both soils. Our results demonstrated that SCKM amendment was effective in reducing the phytoavailability and transfer of Cd in soil-rice system, and ameliorating soil acidity. The SCKM amendment had greater potential as a low-cost and friendly environmentally amendment for safe production of rice in Cd-contaminated soils.

Soil quality assessment of coastal salt-affected acid soils of India.

Soil salinity and acidity are some of the major causes of land degradation and have a negative impact on agricultural productivity. Assessing soil quality (SQ) of soils affected by soil salinity and acidity is required for their sustainable utilization for agricultural production. The aim of the present study was to evaluate the SQ of the salt-affected acid soils of the Indian West Coastal region using the additive and weighted soil quality indices (SQIs). The SQIs were developed using a total dataset (TDS) and a minimum dataset (MDS). The TDS comprised of 15 different soil properties as electrical conductivity (EC), pH, bulk density, soil available nitrogen (N), phosphorus (P), potassium (K), sulfur (S), boron (B), iron (Fe), manganese (Mn), copper (Cu), zinc (Zn) and exchangeable calcium (Ca), magnesium (Mg), and sodium (Na) measured on 300 soil samples (depth 0-0.15 m). Based on principal component analysis and correlation analysis, an MDS with soil properties like soil pH, EC, Na, Cu, Mn, and BD was formed. Using two approaches (additive and weighted), two datasets (TDS and MDS), and two scoring methods (linear and non-linear), eight SQIs were developed. The MDS-based linear weighted and non-linear weighted SQI found suitable to evaluate SQ of salt-affected acid soils and SQI had a significant and negative correlation of - 0.83 and - 0.70 (p < 0.01) with EC, respectively. Thus, it is clear that the SQ considerably reduces with an increase in soil salinity. The performance of the MDS-based SQIs was better than the TDS to discriminate different soil salinity classes. The agreement between the linear and non-linear scoring method of SQI had a linear relationship with a coefficient of determination (R2) of 0.91-0.96. Thus, assessing the SQ of salt-affected acid soils using MDS, linear scoring, and weighted approach of the soil quality indexing could save the time and cost involved.

[Effects of amendments on the alleviation of aluminum toxicity and cadmium and zinc uptake by Sedum plumbizincicola in acid soils].

To explore the effects of some chemical amendments on the plant growth and phytoextraction efficiencies of cadmium (Cd)/zinc (Zn) hyper accumulator Sedum plumbizincicola in acid soils with high aluminum (Al) toxicity, a greenhouse pot experiment was conducted. Different kinds and dosages of amendments including calciummagnesium-phosphorus fertilizer (CMP), magnesium carbonate (MgCO3), potassium dihydrogen phosphate (KH2POPO4 ) were added. The results showed that CMP and MgCO3 increased soil pH and decreased soil exchangeable Al concentration to some extent, while KH2PO4 reduced soil exchangeable Al concentration but had little effect on increasing soil pH. Proper application (9.39 mg/kg) of CMP could improve the biomass and Cd and Zn phytoextraction efficiencies by S. plumbizincicola but it would inhibit plant growth and phytoextraction performance when exceeding 9.39 mg/kg. MgCO3 addition enhanced plant metal uptake while KH2PO4 presented an opposite effect. It suggests that using CMP and MgCO3 could alleviate Al toxicity to S. plumbizincicola in acid soils and maintain relatively high metal extraction efficiency.

Identification of genes encoding ALMT and MATE transporters as candidate aluminum tolerance genes from a typical acid soil plant, Psychotria rubra (Rubiaceae).

To understand how tropical plants have adapted to acid soils, we analyzed the transcriptome of seedlings of Psychotria rubra, a typical species found on acid soils. Using RNA-seq, we identified 22,798 genes, including several encoding proteins of the Al3+-activated malate transporter (ALMT) and multidrug and toxic compound extrusion (MATE) families. Molecular phylogenetic analysis of ALMTs and MATEs revealed the grouping of those from P. rubra, which may be useful to select targets for elucidating the molecular basis of P. rubra adaptation to acid soils in the future. The transcriptome datasets obtained in this study would help us to further understand the physiological and ecological aspects of soil adaptation of Psychotria species.

Impacts of low-level liming on soil respiration and forage production in a fertilized upland grassland in Central France.

Liming is a common agricultural practice for improving acidic soils, but the addition of liming materials may also promote soil carbon dioxide (CO2) emissions, with adverse effects for climate regulation. In grasslands, current understanding of liming impacts on greenhouse gas emissions is limited by a lack of field data on liming and soil respiration. Here we used a two-year field trial and in situ chamber measurements to evaluate the effects of repeated, low-level liming on soil CO2 emissions from an acidic managed grassland with high soil organic matter content. Soil pH, temperature and moisture were measured during the experiment, as well as microbial and plant biomass, in order to assess possible liming-induced changes to drivers of grassland carbon cycling. Soil CO2 emissions showed significant variation during the two-year study, driven primarily by fluctuations in soil temperature. Soil respiration rates were unaffected by liming treatment, despite significant lime-induced increases in soil pH. Liming was associated with a decrease in biomass produced per gram nitrogen, as well as a decrease in forage C:N in the second year and transient decreases in microbial C:N, but neither plant nor microbial biomass showed significant responses to liming addition. Collectively, our results suggest that positive effects of low-level liming on plants and soil are not offset by increases in soil CO2 emissions in situ, highlighting the potential for sustainable liming practices in fertilized grasslands.