A three-dimensional quantification of calcified and non-calcified plaques in coronary arteries based on computed tomography coronary angiography images: Comparison with expert's annotations and virtual histology intravascular ultrasound.

The detection, quantification and characterization of coronary atherosclerotic plaques has a major effect on the diagnosis and treatment of coronary artery disease (CAD). Different studies have reported and evaluated the noninvasive ability of Computed Tomography Coronary Angiography (CTCA) to identify coronary plaque features. The identification of calcified plaques (CP) and non-calcified plaques (NCP) using CTCA has been extensively studied in cardiovascular research. However, NCP detection remains a challenging problem in CTCA imaging, due to the similar intensity values of NCP compared to the perivascular tissue, which surrounds the vasculature. In this work, we present a novel methodology for the identification of the plaque burden of the coronary artery and the volumetric quantification of CP and NCP utilizing CTCA images and we compare the findings with virtual histology intravascular ultrasound (VH-IVUS) and manual expert's annotations. Bland-Altman analyses were employed to assess the agreement between the presented methodology and VH-IVUS. The assessment of the plaque volume, the lesion length and the plaque area in 18 coronary lesions indicated excellent correlation with VH-IVUS. More specifically, for the CP lesions the correlation of plaque volume, lesion length and plaque area was 0.93, 0.84 and 0.85, respectively, whereas the correlation of plaque volume, lesion length and plaque area for the NCP lesions was 0.92, 0.95 and 0.81, respectively. In addition to this, the segmentation of the lumen, CP and NCP in 1350 CTCA slices indicated that the mean value of DICE coefficient is 0.72, 0.7 and 0.62, whereas the mean HD value is 1.95, 1.74 and 1.95, for the lumen, CP and NCP, respectively.

Automatic aortic root segmentation and anatomical landmarks detection for TAVI procedure planning.

PURPOSE: Minimally invasive trans-catheter aortic valve implantation (TAVI) has emerged as a treatment of choice for high-risk patients with severe aortic stenosis. However, the planning of TAVI procedures would greatly benefit from automation to speed up, secure and guide the deployment of the prosthetic valve. We propose a hybrid approach allowing the computation of relevant anatomical measurements along with an enhanced visualization. MATERIAL AND METHODS: After an initial step of centerline detection and aorta segmentation, model-based and statistical-based methods are used in combination with 3 D active contour models to exploit the complementary aspects of these methods and automatically detect aortic leaflets and coronary ostia locations. Important anatomical measurements are then derived from these landmarks. RESULTS: A validation on 50 patients showed good precision with respect to expert sizing for the ascending aorta diameter calculation (2.2 ± 2.1 mm), the annulus diameter (1.31 ± 0.75 mm), and both the right and left coronary ostia detection (1.96 ± 0.87 mm and 1.80 ± 0.74 mm, respectively). The visualization is enhanced thanks to the aorta and aortic root segmentation, the latter showing good agreement with manual expert delineation (Jaccard index: 0.96 ± 0.03). CONCLUSION: This pipeline is promising and could greatly facilitate TAVI planning.

Active contours driven by edge entropy fitting energy for image segmentation.

Active contour models have been widely used for image segmentation purposes. However, they may fail to delineate objects of interest depicted on images with intensity inhomogeneity. To resolve this issue, a novel image feature, termed as local edge entropy, is proposed in this study to reduce the negative impact of inhomogeneity on image segmentation. An active contour model is developed on the basis of this feature, where an edge entropy fitting (EEF) energy is defined with the combination of a redesigned regularization term. Minimizing the energy in a variational level set formulation can successfully drive the motion of an initial contour curve towards optimal object boundaries. Experiments on a number of test images demonstrate that the proposed model has the capability of handling intensity inhomogeneity with reasonable segmentation accuracy.

The Development of Skull Prosthesis Through Active Contour Model.

Skull defects result in brain infection and inadequate brain protection and pose a general danger to patient health. To avoid these situations and prevent re-injury, a prosthesis must be constructed and grafted onto the deficient region. With the development of rapid customization through additive manufacturing and 3D printing technology, skull prostheses can be fabricated accurately and efficiently prior to cranioplasty. However, an unfitted skull prosthesis made with a metal implant can cause repeated infection, potentially necessitating secondary surgery. This paper presents a method of creating suitably geometric graphics of skull defects to be applied in skull repair through active contour models. These models can be adjusted in each computed tomography slice according to the graphic features, and the curves representing the skull defect can be modeled. The generated graphics can adequately mimic the natural curvature of the complete skull. This method will enable clinical surgeons to rapidly implant customized prostheses, which is of particular importance in emergency surgery. The findings of this research can help surgeons provide patients with skull defects with treatment of the highest quality.

Segmentation of medical images using mean value guided contour.

Partial differential equation-based (PDE-based) methods are extensively used in image segmentation, especially in contour models. Difficulties associated with the boundaries, namely troubles with developing initialization, inadequate convergence to boundary concavities, and difficulties connected to saddle points and stationary points of active contours make the contour models suffer from a feeble performance of referring to complex geometries. The present paper is designed to take advantage of mean value theorem rather than minimizing energy function for contours. It is efficiently capable of resolving above-mentioned problems by applying this theorem to the edge map gradient vectors, which is calculated from the image. Since the contour is computed in a straightforward manner from an edge map instead of force balance equation, it varies from other contour-based image segmentation methods. To illustrate the ability of the proposed model in complex geometries and ruptures, several experiments were also provided to validate the model. The experiments' results demonstrated that the proposed method, which is called mean value guided contour (MVGC), is capable of repositioning contours into boundary concavities and has suitable forcefulness in complex geometries.

Metal artifact reduction in spiral fan-beam CT using a new sinogram segmentation scheme.

Objective of this study is to present and test a new method for metal artifact reduction (MAR) by segmenting raw CT data (sinogram). The artifact suppression technique incorporates two steps namely, metal projection segmentation in the sinogram and replacement of segmented regions by new values using an interpolation method. The proposed segmentation algorithm uses the sinogram instead of reconstructed CT slices. First, one of the best and newest region-based geometric active contour models is used to detect projection data affected by metal objects (missing projections). Then, the Hough-transform method is applied to detect all sinusoidal-like curves belonging to metal objects. Finally, a post image processing technique is used aiming to increase accuracy of the segmentation process. To provide a proof of performance, CT data of two patients with metallic teeth filling and pelvis prosthesis were included in the study as well as CT data of a phantom with metallic teeth inserts. Accuracy was determined by comparing mean, variance, mean squared error (MSE) and, peak signal to noise ratio (PSNR) as evaluation measurements of distortion in phantom images with respect to metallic teeth (original and suppressed) and without metallic teeth inserts. Quantitative results showed an average improvement of 12 dB in terms of PSNR and 517 in terms of MSE when the new MAR method was applied to remove metal artifacts. Qualitative improvement was also assessed by comparing uncorrected clinical images with artifact suppressed images. Moreover, qualitative comparison of the results of the proposed new method with the existing methods of MAR showed the superiority of the new method tested in this study.

An active contour model based on local fitted images for image segmentation.

Active contour models are popular and widely used for a variety of image segmentation applications with promising accuracy, but they may suffer from limited segmentation performances due to the presence of intensity inhomogeneity. To overcome this drawback, a novel region-based active contour model based on two different local fitted images is proposed by constructing a novel local hybrid image fitting energy, which is minimized in a variational level set framework to guide the evolving of contour curves toward the desired boundaries. The proposed model is evaluated and compared with several typical active contour models to segment synthetic and real images with different intensity characteristics. Experimental results demonstrate that the proposed model outperforms these models in terms of accuracy in image segmentation.

Lung disease detection using feature extraction and extreme learning machine

INTRODUCTION: The World Health Organization estimates that by 2030 the Chronic Obstructive Pulmonary Disease (COPD) will be the third leading cause of death worldwide. Computerized Tomography (CT) images of lungs comprise a number of structures that are relevant for pulmonary disease diagnosis and analysis. METHODS: In this paper, we employ the Adaptive Crisp Active Contour Models (ACACM) for lung structure segmentation. And we propose a novel method for lung disease detection based on feature extraction of ACACM segmented images within the cooccurrence statistics framework. The spatial interdependence matrix (SIM) synthesizes the structural information of lung image structures in terms of three attributes. Finally, we perform a classification experiment on this set of attributes to discriminate two types of lung diseases and health lungs. We evaluate the discrimination ability of the proposed lung image descriptors using an extreme learning machine neural network (ELMNN) comprising 4-10 neurons in the hidden layer and 3 neurons in the output layer to map each pulmonary condition. This network was trained and validated by applying a holdout procedure. RESULTS: The experimental results achieved 96% accuracy demonstrating the effectiveness of the proposed method on identifying normal lungs and diseases as COPD and fibrosis. CONCLUSION: Our results lead to conclude that the method is suitable to integrate clinical decision support systems for pulmonary screening and diagnosis.

Fuzzy speed function based active contour model for segmentation of pulmonary nodules.

Pulmonary nodules are potential manifestation of lung cancer. Accurate segmentation of juxta-vascular nodules and ground glass opacity (GGO) nodules is an important and active area of research in medical image processing. At present, the classical active contour models (ACM) for segmentation of pulmonary nodules may cause the problem of boundary leakage. In order to solve the problem, a new fuzzy speed function-based active model for segmentation of pulmonary nodules is proposed in this paper. The fuzzy speed function incorporated into the ACM is calculated by the degree of membership based on intensity feature and local shape index. At the boundary of pulmonary nodules, the fuzzy speed function approaches zero and the evolution of the contour curve will stop, so the accurate segmentation of pulmonary nodules can be obtained. Experimental results on juxta-vascular nodules and GGO nodules show that the proposed ACM can achieve accurate segmentation.

Modelo de Contorno Ativo Crisp Adaptativo 2D aplicado na segmentação dos pulmões em imagens de TC do tórax de voluntários sadios e pacientes com enfisema pulmonar / Adaptive 2D Crisp Active Contour Model applied to lung segmentation in CT images of the thorax of healthy volunteers and patients with pulmonary emphysema

INTRODUÇÃO: Dentre as doenças que afetam a população mundial, destaca-se a preocupação com a Doença Pulmonar Obstrutiva Crônica (DPOC), que, segundo a Organização Mundial de Saúde, pode se constituir na terceira causa de morte mais importante em todo mundo no ano de 2030. Visando contribuir com o auxílio ao diagnóstico médico, esta pesquisa centraliza seus esforços na etapa de segmentação dos pulmões, visto que esta é a etapa básica de sistema de Visão Computacional na area de pneumologia. MÉTODOS: Este trabalho propõe um novo método de segmentação dos pulmões em imagens de Tomografia Computadorizada (TC) do tórax chamado de Método de Contorno Ativo (MCA) Crisp Adaptativo 2D. Este MCA consiste em traçar automaticamente uma curva inicial dentro dos pulmões, que se deforma por iterações sucessivas, minimizando energias que atuam sobre a mesma, deslocando-a até as bordas do objeto. O MCA proposto é o resultado do aperfeiçoamento do MCA Crisp desenvolvido previamente, visando aumentar a sua exatidão, diminuindo o tempo de análise e reduzindo a subjetividade na segmentação e análise dos pulmões dessas imagens pelos médicos especialistas. Este método por iterações sucessivas de minimização de sua energia, segmenta de forma automática os pulmões em imagens de TC do tórax. RESULTADOS: Para sua validação, o MCA Crisp Adaptativo é comparado com os MCAs THRMulti, THRMod, GVF, VFC, Crisp e também com o sistema SISDEP, sendo esta avaliação realizada utilizando como referência 24 imagens, sendo 12 de pacientes com DPOC e 12 de voluntários sadios, segmentadas manualmente por um pneumologista. Os resultados obtidos demonstram que o método proposto é superior aos demais. CONCLUSÃO: Diante dos resultados obtidos, pode-se concluir que este método pode integrar sistemas de auxílio ao diagnóstico médico na área de Pneumologia.

INTRODUCTION: Among the diseases that affect the world's population, there is concern about Chronic Obstructive Pulmonary Disease (COPD), that, according to the World Health Organization, could be the leading cause of death worldwide by the year 2030. Aiming to contribute to aid medical diagnosis, this research focuses its efforts on the segmentation of the lungs, since this is the basic step system in the area of Computer Vision pulmonology. METHODS: This paper proposes a new method for segmentation of lung images in Computed Tomography (CT) of the chest called Active Contour Method (MCA) Crisp Adaptive 2D. This MCA is to draw a curve starting inside an object of interest. This curve is deformed by successive iterations, minimizing energies that act on it, moving it to the edges of the object. The MCA is the improvement of the proposed MCA Crisp previously developed, aiming to increase the accuracy, decreasing analysis time and reducing the subjectivity in the segmentation and analysis of the lungs of these images by pulmonologists. This method is automatically initialized in the lungs and on successive iterations to minimize this energy, this MCA automatically targets the lungs in chest CT images. RESULTS: To evaluate the proposed method, the MCA Adaptive Crisp is compared with MCAs THRMulti, THRMod, GVF, VFC, Crisp and also with the system SISDEP, this assessment is performed using reference images 24, 12 COPD patients and 12 volunteers healthy, manually segmented by a pulmonologist. The results show that the proposed method is superior to the others. CONCLUSION: Based on the results, it can be concluded that this method can integrate systems aid in the medical diagnosis of Pulmonology.

Modelo de contorno ativo crisp: nova técnica de segmentação dos pulmões em imagens de TC / Active contour modes crisp: new technique for segmentation the lungs in CT images

Este trabalho propõe um novo método de contornos ativos (MCA), chamado de MCA Crisp, e o avalia na segmentação dos pulmões em imagens de Tomografia Computadorizada (TC). O MCA consiste em traçar uma curva inicial em torno ou dentro de um objeto de interesse. Esta curva se deforma, conforme algumas energias que atuam sobre a mesma, deslocando-a até as bordas do objeto. Este processo é realizado por iterações sucessivas de minimização de uma dada energia, associada à curva. Aplicando MCAs descritos na literatura na segmentação dos pulmões em imagens de TC, constatam-se limitações. Neste contexto, propõe‑-se o MCA Crisp para suprir tais limitações, propondo uma inicialização automática e uma nova energia externa baseada em regras e nas densidades radiológicas pulmonares. Realiza-se uma comparação entre os MCAs Tradicional, Balão, GVF e o método proposto para demonstrar a superioridade do novo método. Em seguida, para validar o MCA Crisp realiza-se uma análise qualitativa junto a um médico especialista na área de Pneumologia do Hospital Universitário Walter Cantídio da Universidade Federal do Ceará. Nesta análise, são utilizados 100  pulmões em imagens de TC. A eficiência da segmentação foi avaliada em  5 categorias, obtendo os seguintes resultados:   73% ótimas, sem falhas, 20% aceitáveis, com pequenos erros, 7% razoáveis, com erros grosseiros e  0% ruim, segmentando apenas uma pequena parte do pulmão, e  0% péssima, obtendo uma segmentação totalmente errada. Conclui-se que o MCA Crisp é um método útil para segmentar os pulmões em imagens de TC e com potencial para integrar sistemas que auxiliem o diagnóstico médico.

This paper proposes a new Active Contour Model (ACM), called ACM Crisp, and evaluates the segmentation of lungs in computed tomography (CT) images. An ACM draws a curve around or within the object of interest. This curve changes its shape, when some energy acts on it and moves towards the edges of the object. This process is performed by successive iterations of minimization of a given energy, associated with the curve. The ACMs described in the literature have limitations when used for segmentations of CT lung images. The ACM Crisp model overcomes these limitations, since it proposes automatic initiation and new external energy based on rules and radiological pulmonary densities. The paper compares other ACMs with the proposed method, which is shown to be superior. In order to validate the algorithm a medical expert in the field of Pulmonology of the Walter Cantídio University Hospital from the Federal University of Ceará carried out a qualitative analysis. In these analyses  100 CT lung images were used. The segmentation efficiency was evaluated into  5 categories with the following results for the ACM Crisp: 73% excellent, without errors, 20% acceptable, with small errors, and  7% reasonable, with large errors, 0% poor, covering only a small part of the lung, and  0% very bad, making a totally incorrect segmentation. In conclusion the ACM Crisp is considered a useful algorithm to segment CT lung images, and with potential to integrate medical diagnosis systems.