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1.
Chem Biodivers ; 20(10): e202300286, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37714813

RESUMO

This study aimed to report the unprecedented volatile composition of the mosses Phyllogonium viride BRID, Orthotichella rigida (MÜLL.HAL.) B. H. ALLEN & MAGILL and Schlotheimia rugifolia (HOOK.) SCHWÄGR occurring in the Brazilian Atlantic Forest, in order to elucidate the chemical composition of these species and enrich the chemotaxonomic knowledge of mosses. 28 compounds were identified, the major constituent being hexadecanoic acid, also known as palmitic acid, specifically P. viride com (38.55 %), O. rigida com (17.17 %) and S. rugifolia com (24.94 %), followed by phytol, P. viride com (3.92 %), O. rigida com (28.57 %) and S. rugifolia com (36.13 %). In addition, there was a prevalence of aliphatic hydrocarbons (25 %) and fatty acids (17.8 %) in the evaluated samples. These data contribute to the generation of new scientific information about the chemical constitution of mosses, still little studied, enriching the chemotaxonomic collection of the taxon.

2.
Sci Total Environ ; 728: 138731, 2020 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-32339835

RESUMO

Gray water constitutes an important fraction of total wastewater. Some of the most problematic compounds in gray water are the anionic surfactants used as an ingredient for domestic and industrial soaps and detergents. The alkylbenzene sulfonates used in commercially available formula are highly complex mixtures of linear (LAS) and branched (BAS) molecules. LAS are classified generally as biodegradable, although their widespread use generates accumulation in the environment. Docking tools, widely used in recent years in the bioremediation field, allow molecular modeling of the ligand-enzyme interaction, which is key to understanding and evaluating the possibility of biodegradation. In this work, molecular details that allow us to establish a biodegradation pattern for some alkylbenzene sulfonates were elucidated. Two hydrogen bonds, key for the anchorage of surfactants to the monooxygenase active site involved in the initial biodegradation, were found. These bonds determine the way surfactants locate in the hydrophobic pocket of the enzyme affecting the biodegradation rate in a structurally dependent manner. For C10 to C12 linear isomers, the degradation rate increased together with the length of the hydrocarbon chain. For C13 and C14 isomers, steric difficulties to accommodate the surfactant molecule in the catalytic site were observed. For branched chain isomers, little or no biodegradation was found. In addition, biodegradation was lower in mixtures than for the pure isomers. These results will allow an intelligent design of this family of anionic surfactants to attenuate their contaminating effects in waters and soils. This study constitutes, to the best of our knowledge, a novel contribution towards the design of environmentally friendly surfactants with higher probabilities of being biodegraded to complete mineralization.


Assuntos
Ácidos Alcanossulfônicos , Alcanossulfonatos , Biodegradação Ambiental , Filosofias Religiosas , Tensoativos
3.
Mar Environ Res ; 153: 104816, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-31679790

RESUMO

The estimation of oil spill effects on marine ecosystems is limited to the extent of our knowledge on the autochthonous biota. Fungi are involved in key ecological marine processes, representing a major component of post-spill communities. However, information on their functional capacities remains lacking. Herein we analyzed cultivable fungi from sediments in two oil-drilling regions of the Gulf of Mexico for their ability to tolerate and use hexadecane and 1-hexadecene as the sole carbon sources; and to evaluate gene expression profiles of key hydrocarbonoclastic taxa during utilization of these hydrocarbons. The isolated fungi showed differential sensitivity patterns towards the tested hydrocarbons under three different concentrations. Remarkably, six OTUs (Aureobasidium sp., Penicillium brevicompactum, Penicillium sp., Phialocephala sp., Cladosporium sp. 1 and 2) metabolized the tested alkane and alkene as the sole carbon sources, confirming that deep-sea fungal taxa are valuable genetic resources with potential use in bioremediation. RNA-seq results revealed distinctive gene expression profiles in the hydrocarbonoclastic fungus Penicillium sp. when using hexadecane and 1-hexadecene as the sole carbon sources, with up-regulation of genes involved in transmembrane transport, metabolism of six-carbons carbohydrates, and nitric oxide pathways.

4.
Mar Drugs ; 17(9)2019 Sep 09.
Artigo em Inglês | MEDLINE | ID: mdl-31505775

RESUMO

The occurrence of sulfated steroids and phenolics in marine organisms is quite widespread, being typically reported from Echinoderms. In contrast, alkane and alkene aliphatic sulfates are considerably rarer with examples being reported from a diverse array of organisms including echinoderms, sponges and ascidians. While no ecological roles for these metabolites have been proposed, they do exhibit a diverse array of biological activities including thrombin inhibition; the ability to induce metamorphosis in larvae; antiproliferative, antibacterial and antifungal properties; and metalloproteinase inhibition. Of particular interest and an avenue for future development is the finding of antifouling properties with low or nontoxic effects to the environment. This review focuses on alkyl sulfates and related sulfamates, their structures and biological activities. Spectroscopic and spectrometric techniques that can be used to recognize the presence of sulfate groups are also discussed, data for which will enhance the ability of researchers to recognize this class of chemically- and biologically-interesting marine natural products.


Assuntos
Organismos Aquáticos/química , Produtos Biológicos/química , Produtos Biológicos/farmacologia , Invertebrados/química , Sulfatos/química , Sulfatos/farmacologia , Animais , Antifúngicos/química , Antifúngicos/farmacologia , Equinodermos/química , Humanos , Larva/química , Urocordados/química
5.
mBio ; 10(4)2019 08 20.
Artigo em Inglês | MEDLINE | ID: mdl-31431553

RESUMO

Crude oil and gases in the seabed provide an important energy source for subsurface microorganisms. We investigated the role of archaea in the anaerobic degradation of non-methane alkanes in deep-sea oil seeps from the Gulf of Mexico. We identified microscopically the ethane and short-chain alkane oxidizers "Candidatus Argoarchaeum" and "Candidatus Syntrophoarchaeum" forming consortia with bacteria. Moreover, we found that the sediments contain large numbers of cells from the archaeal clade "Candidatus Methanoliparia," which was previously proposed to perform methanogenic alkane degradation. "Ca. Methanoliparia" occurred abundantly as single cells attached to oil droplets in sediments without apparent bacterial or archaeal partners. Metagenome-assembled genomes of "Ca. Methanoliparia" encode a complete methanogenesis pathway including a canonical methyl-coenzyme M reductase (MCR) but also a highly divergent MCR related to those of alkane-degrading archaea and pathways for the oxidation of long-chain alkyl units. Its metabolic genomic potential and its global detection in hydrocarbon reservoirs suggest that "Ca. Methanoliparia" is an important methanogenic alkane degrader in subsurface environments, producing methane by alkane disproportionation as a single organism.IMPORTANCE Oil-rich sediments from the Gulf of Mexico were found to contain diverse alkane-degrading groups of archaea. The symbiotic, consortium-forming "Candidatus Argoarchaeum" and "Candidatus Syntrophoarchaeum" are likely responsible for the degradation of ethane and short-chain alkanes, with the help of sulfate-reducing bacteria. "Ca. Methanoliparia" occurs as single cells associated with oil droplets. These archaea encode two phylogenetically different methyl-coenzyme M reductases that may allow this organism to thrive as a methanogen on a substrate of long-chain alkanes. Based on a library survey, we show that "Ca. Methanoliparia" is frequently detected in oil reservoirs and may be a key agent in the transformation of long-chain alkanes to methane. Our findings provide evidence for the important and diverse roles of archaea in alkane-rich marine habitats and support the notion of a significant functional versatility of the methyl coenzyme M reductase.


Assuntos
Alcanos/metabolismo , Anaerobiose/fisiologia , Euryarchaeota/metabolismo , Hidrocarbonetos/metabolismo , Metano/metabolismo , Bactérias/metabolismo , Biodegradação Ambiental , Euryarchaeota/classificação , Euryarchaeota/genética , Ácidos Graxos/metabolismo , Sedimentos Geológicos/microbiologia , Golfo do México , Metagenômica , Campos de Petróleo e Gás/microbiologia , Oxirredução , Oxirredutases , Filogenia , RNA Ribossômico 16S/genética
6.
J Ind Microbiol Biotechnol ; 45(1): 15-23, 2018 01.
Artigo em Inglês | MEDLINE | ID: mdl-29116430

RESUMO

Diesel fuel is one of the most important sources of hydrocarbon contamination worldwide. Its composition consists of a complex mixture of n-alkanes, branched alkanes and aromatic compounds. Hydrocarbon degradation in Pseudomonas species has been mostly studied under aerobic conditions; however, a dynamic spectrum of oxygen availability can be found in the environment. Pseudomonas extremaustralis, an Antarctic bacterium isolated from a pristine environment, is able to degrade diesel fuel and presents a wide microaerophilic metabolism. In this work RNA-deep sequence experiments were analyzed comparing the expression profile in aerobic and microaerophilic cultures. Interestingly, genes involved in alkane degradation, including alkB, were over-expressed in micro-aerobiosis in absence of hydrocarbon compounds. In minimal media supplemented with diesel fuel, n-alkanes degradation (C13-C19) after 7 days was observed under low oxygen conditions but not in aerobiosis. In-silico analysis of the alkB promoter zone showed a putative binding sequence for the anaerobic global regulator, Anr. Our results indicate that some diesel fuel components can be utilized as sole carbon source under microaerophilic conditions for cell maintenance or slow growth in a Pseudomonas species and this metabolism could represent an adaptive advantage in polluted environments.


Assuntos
Alcanos/metabolismo , Gasolina , Pseudomonas/metabolismo , Aerobiose , Biodegradação Ambiental , Citocromo P-450 CYP4A/genética , Citocromo P-450 CYP4A/metabolismo , Pseudomonas/enzimologia , Pseudomonas/genética , Transcriptoma
7.
J Comput Aided Mol Des ; 31(2): 163-181, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-28054187

RESUMO

This Perspective explores how consideration of hydrogen bonding can be used to both predict and better understand partition coefficients. It is shown how polarity of both compounds and substructures can be estimated from measured alkane/water partition coefficients. When polarity is defined in this manner, hydrogen bond donors are typically less polar than hydrogen bond acceptors. Analysis of alkane/water partition coefficients in conjunction with molecular electrostatic potential calculations suggests that aromatic chloro substituents may be less lipophilic than is generally believed and that some of the effect of chloro-substitution stems from making the aromatic π-cloud less available to hydrogen bond donors. Relationships between polarity and calculated hydrogen bond basicity are derived for aromatic nitrogen and carbonyl oxygen. Aligned hydrogen bond acceptors appear to present special challenges for prediction of alkane/water partition coefficients and this may reflect 'frustration' of solvation resulting from overlapping hydration spheres. It is also shown how calculated hydrogen bond basicity can be used to model the effect of aromatic aza-substitution on octanol/water partition coefficients.


Assuntos
Alcanos/química , Modelos Moleculares , Água/química , Ligação de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Estrutura Molecular , Solubilidade , Eletricidade Estática
8.
Microb Ecol ; 71(1): 100-12, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26547568

RESUMO

We aimed to gain insight into the alkane degradation potential of microbial communities from chronically polluted sediments of a subantarctic coastal environment using a combination of metagenomic approaches. A total of 6178 sequences annotated as alkane-1-monooxygenases (EC 1.14.15.3) were retrieved from a shotgun metagenomic dataset that included two sites analyzed in triplicate. The majority of the sequences binned with AlkB described in Bacteroidetes (32 ± 13 %) or Proteobacteria (29 ± 7 %), although a large proportion remained unclassified at the phylum level. Operational taxonomic unit (OTU)-based analyses showed small differences in AlkB distribution among samples that could be correlated with alkane concentrations, as well as with site-specific variations in pH and salinity. A number of low-abundance OTUs, mostly affiliated with Actinobacterial sequences, were found to be only present in the most contaminated samples. On the other hand, the molecular screening of a large-insert metagenomic library of intertidal sediments from one of the sampling sites identified two genomic fragments containing novel alkB gene sequences, as well as various contiguous genes related to lipid metabolism. Both genomic fragments were affiliated with the phylum Planctomycetes, and one could be further assigned to the genus Rhodopirellula due to the presence of a partial sequence of the 23S ribosomal RNA (rRNA) gene. This work highlights the diversity of bacterial groups contributing to the alkane degradation potential and reveals patterns of functional diversity in relation with environmental stressors in a chronically polluted, high-latitude coastal environment. In addition, alkane biodegradation genes are described for the first time in members of Planctomycetes.


Assuntos
Alcanos/metabolismo , Bactérias/isolamento & purificação , Bactérias/metabolismo , Sedimentos Geológicos/microbiologia , Poluentes Químicos da Água/metabolismo , Bactérias/classificação , Bactérias/genética , Biodegradação Ambiental , Biodiversidade , Sedimentos Geológicos/análise , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Filogenia , Água do Mar/análise , Água do Mar/microbiologia , Poluentes Químicos da Água/análise
9.
Braz. arch. biol. technol ; Braz. arch. biol. technol;58(5): 789-797, tab, graf
Artigo em Inglês | LILACS | ID: lil-764481

RESUMO

ABSTRACTA lipase producing bacterium was isolated from oil contaminated effluents of various industries from Sheikhupura Road, Pakistan, and, on the basis of biochemical and 16S rRNA ribotyping, was identified asBacillus subtilis. The optimum temperature and pH for the growth of the culture were 37ºC and 7.0, respectively.B. subtilis I-4 had a lag phase of 4 h in LB medium while this phase prolonged to 6 h in oil containing medium. The optimum temperature and pH for the enzyme activity were 50ºC and 7.0, respectively. Maximum lipase activity was found in the presence of Ca ions. Olive oil and Tween 80 induced lipase gene in the bacterium while concentration of oil greater than 2% retarded the growth of the organism. In addition to lipaseB. subtilis I-4 also produced alkane hydroxylase and biosurfactant which could make this bacterium potential candidate for lipase production as well as bioremediation of oil-contaminated wastewater.

10.
Braz J Microbiol ; 46(3): 649-57, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26413044

RESUMO

To facilitate the biodegradation of diesel oil, an oil biodegradation bacterial consortium was constructed. The alkane hydroxylase (alkB) gene of Pseudomonas putida GPo1 was constructed in a pCom8 expression vector, and the pCom8-GPo1 alkB plasmid was transformed into Escherichia coli DH5α. The AlkB protein was expressed by diesel oil induction and detected through SDS-polyacrylamide gel electrophoresis. The culture of the recombinant (pCom8-GPo1 alkB/E. coli DH5α) with the oil biodegradation bacterial consortium increased the degradation ratio of diesel oil at 24 h from 31% to 50%, and the facilitation rates were increased as the proportion of pCom8-GPo1 alkB/E. coli DH5α to the consortium increased. The results suggested that the expression of the GPo1 gene in E. coli DH5α could enhance the function of diesel oil degradation by the bacterial consortium.


Assuntos
Acinetobacter/metabolismo , Biodegradação Ambiental , Citocromo P-450 CYP4A/genética , Escherichia coli/metabolismo , Consórcios Microbianos/genética , Organismos Geneticamente Modificados/metabolismo , Pseudomonas putida/enzimologia , Acinetobacter/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Óleos Combustíveis , Gasolina , Engenharia Genética , Organismos Geneticamente Modificados/genética , Oxirredução , Plasmídeos/genética , Pseudomonas putida/genética , Pseudomonas putida/metabolismo
11.
Braz. J. Microbiol. ; 46(3): 649-657, July-Sept. 2015. tab, ilus, graf
Artigo em Inglês | VETINDEX | ID: vti-17510

RESUMO

To facilitate the biodegradation of diesel oil, an oil biodegradation bacterial consortium was constructed. The alkane hydroxylase (alkB) gene of Pseudomonas putida GPo1 was constructed in a pCom8 expression vector, and the pCom8-GPo1 alkB plasmid was transformed into Escherichia coli DH5α. The AlkB protein was expressed by diesel oil induction and detected through SDS-polyacrylamide gel electrophoresis. The culture of the recombinant (pCom8-GPo1 alkB/E. coli DH5α) with the oil biodegradation bacterial consortium increased the degradation ratio of diesel oil at 24 h from 31% to 50%, and the facilitation rates were increased as the proportion of pCom8-GPo1 alkB. coli DH5α to the consortium increased. The results suggested that the expression of the GPo1 gene in E. coli DH5α could enhance the function of diesel oil degradation by the bacterial consortium.(AU)


Assuntos
Acinetobacter/metabolismo , Biodegradação Ambiental , Citocromo P-450 CYP4A/genética , Escherichia coli/metabolismo , Consórcios Microbianos/genética , Pseudomonas putida/enzimologia , Acinetobacter/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Óleos Combustíveis , Gasolina , Engenharia Genética , Oxirredução , Plasmídeos/genética , Pseudomonas putida/genética , Pseudomonas putida/metabolismo
12.
Braz. j. microbiol ; Braz. j. microbiol;46(3): 649-657, July-Sept. 2015. tab, ilus
Artigo em Inglês | LILACS | ID: lil-755803

RESUMO

To facilitate the biodegradation of diesel oil, an oil biodegradation bacterial consortium was constructed. The alkane hydroxylase (alkB) gene of Pseudomonas putida GPo1 was constructed in a pCom8 expression vector, and the pCom8-GPo1 alkB plasmid was transformed into Escherichia coli DH5α. The AlkB protein was expressed by diesel oil induction and detected through SDS-polyacrylamide gel electrophoresis. The culture of the recombinant (pCom8-GPo1 alkB/E. coli DH5α) with the oil biodegradation bacterial consortium increased the degradation ratio of diesel oil at 24 h from 31% to 50%, and the facilitation rates were increased as the proportion of pCom8-GPo1 alkB/E. coli DH5α to the consortium increased. The results suggested that the expression of the GPo1 gene in E. coli DH5α could enhance the function of diesel oil degradation by the bacterial consortium.

.


Assuntos
Acinetobacter/metabolismo , Biodegradação Ambiental , /genética , Escherichia coli/metabolismo , Consórcios Microbianos/genética , Organismos Geneticamente Modificados/metabolismo , Pseudomonas putida/enzimologia , Acinetobacter/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Óleos Combustíveis , Gasolina , Engenharia Genética , Oxirredução , Organismos Geneticamente Modificados/genética , Plasmídeos/genética , Pseudomonas putida/genética , Pseudomonas putida/metabolismo
13.
Fitoterapia ; 104: 50-4, 2015 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-25987321

RESUMO

Three new brasilane-type sesquiterpenoids, brasilanes A-C (1-3), together with two new alkane derivatives, colisiderin A (4) and 7(E),9(E)-undecandiene-2,4,5-triol (5), were isolated from cultures of the basidiomycete Coltricia sideroides. Their structures were elucidated by NMR and MS data analyses. The absolute configuration of 4 was determined by TDDFT ECD calculations while brasilane-type sesquiterpenoids were isolated from cultures of mushroom for the first time. Compounds 2 and 4 showed weak cytotoxicities against HL-60 and SW480, respectively.


Assuntos
Basidiomycota/química , Sesquiterpenos/química , Agaricales/química , Antineoplásicos/química , Antineoplásicos/isolamento & purificação , Linhagem Celular Tumoral/efeitos dos fármacos , Células HL-60/efeitos dos fármacos , Humanos , Estrutura Molecular , Sesquiterpenos/isolamento & purificação
14.
ACS Nano ; 8(10): 9954-63, 2014 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-25188291

RESUMO

We present an experimental study of the micro- and mesoscopic structure of thin films of medium length n-alkane molecules on the native oxide layer of a silicon surface, prepared by dip-coating in a n-C32H66/n-heptane solution. Electron micrographs reveal two distinct adsorption morphologies depending on the substrate withdrawal speed v. For small v, dragonfly-shaped molecular islands are observed. For a large v, stripes parallel to the withdrawal direction are observed. These have lengths of a few hundred micrometers and a few micrometer lateral separation. For a constant v, the stripes' quality and separation increase with the solution concentration. Grazing incidence X-ray diffraction and atomic force microscopy show that both patterns are 4.2 nm thick monolayers of fully extended, surface-normal-aligned alkane molecules. With increasing v, the surface coverage first decreases then increases for v > v(cr) ∼ 0.15 mm/s. The critical v(cr) marks a transition between the evaporation regime, where the solvent's meniscus remains at the bulk's surface, and the entrainment (Landau-Levich-Deryaguin) regime, where the solution is partially dragged by the substrate, covering the withdrawn substrate by a homogeneous film. The dragonflies are single crystals with habits determined by dendritic growth in prominent 2D crystalline directions of randomly seeded nuclei assumed to be quasi-hexagonal. The stripes' strong crystalline texture and the well-defined separation are due to an anisotropic 2D crystallization in narrow liquid fingers, which result from a Marangoni flow driven hydrodynamic instability in the evaporating dip-coated films, akin to the tears of wine phenomenology.

15.
Braz J Microbiol ; 44(2): 633-41, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24294263

RESUMO

The petroleum-derived degrading Dietzia cinnamea strain P4 recently had its genome sequenced and annotated. This allowed employing the data on genes that are involved in the degradation of n-alkanes. To examine the physiological behavior of strain P4 in the presence of n-alkanes, the strain was grown under varying conditions of pH and temperature. D. cinnamea P4 was able to grow at pH 7.0-9.0 and at temperatures ranging from 35 ºC to 45 ºC. Experiments of gene expression by real-time quantitative RT-PCR throughout the complete growth cycle clearly indicated the induction of the regulatory gene alkU (TetR family) during early growth. During the logarithmic phase, a large increase in transcriptional levels of a lipid transporter gene was noted. Also, the expression of a gene that encodes the protein fused rubredoxin-alkane monooxygenase was enhanced. Both genes are probably under the influence of the AlkU regulator.


Assuntos
Actinomycetales/genética , Actinomycetales/metabolismo , Alcanos/metabolismo , Perfilação da Expressão Gênica , Genes Bacterianos , Hidrocarbonetos/metabolismo , Redes e Vias Metabólicas/genética , Actinomycetales/crescimento & desenvolvimento , Biotransformação , Concentração de Íons de Hidrogênio , Reação em Cadeia da Polimerase em Tempo Real , Temperatura
16.
Front Microbiol ; 4: 370, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24376439

RESUMO

Natural and anthropogenic activities introduce alkanes into marine systems where they are degraded by alkane hydroxylases expressed by phylogenetically diverse bacteria. Partial sequences for alkB, one of the structural genes of alkane hydroxylase, have been used to assess the composition of alkane-degrading communities, and to determine their responses to hydrocarbon inputs. We present here the first spatially extensive analysis of alkB in bacterioplankton of the northern Gulf of Mexico (nGoM), a region that experiences numerous hydrocarbon inputs. We have analyzed 401 partial alkB gene sequences amplified from genomic extracts collected during March 2010 from 17 water column samples that included surface waters and bathypelagic depths. Previous analyses of 16S rRNA gene sequences for these and related samples have shown that nGoM bacterial community composition and structure stratify strongly with depth, with distinctly different communities above and below 100 m. Although we hypothesized that alkB gene sequences would exhibit a similar pattern, PCA analyses of operational protein units (OPU) indicated that community composition did not vary consistently with depth or other major physical-chemical variables. We observed 22 distinct OPUs, one of which was ubiquitous and accounted for 57% of all sequences. This OPU clustered with AlkB sequences from known hydrocarbon oxidizers (e.g., Alcanivorax and Marinobacter). Some OPUs could not be associated with known alkane degraders, however, and perhaps represent novel hydrocarbon-oxidizing populations or genes. These results indicate that the capacity for alkane hydrolysis occurs widely in the nGoM, but that alkane degrader diversity varies substantially among sites and responds differently than bulk communities to physical-chemical variables.

17.
Braz. J. Microbiol. ; 44(2): 639-647, 2013.
Artigo em Inglês | VETINDEX | ID: vti-22

RESUMO

The petroleum-derived degrading Dietzia cinnamea strain P4 recently had its genome sequenced and annotated. This allowed employing the data on genes that are involved in the degradation of n-alkanes. To examine the physiological behavior of strain P4 in the presence of n-alkanes, the strain was grown under varying conditions of pH and temperature. D. cinnamea P4 was able to grow at pH 7.0-9.0 and at temperatures ranging from 35 ºC to 45 ºC. Experiments of gene expression by real-time quantitative RT-PCR throughout the complete growth cycle clearly indicated the induction of the regulatory gene alkU (TetR family) during early growth. During the logarithmic phase, a large increase in transcriptional levels of a lipid transporter gene was noted. Also, the expression of a gene that encodes the protein fused rubredoxin-alkane monooxygenase was enhanced. Both genes are probably under the influence of the AlkU regulator.(AU)


Assuntos
Indústria de Petróleo e Gás , Hidrocarbonetos , Palmitatos , Biodegradação Ambiental
18.
Braz. j. microbiol ; Braz. j. microbiol;44(2): 639-647, 2013. ilus, graf, tab
Artigo em Inglês | LILACS | ID: lil-688595

RESUMO

The petroleum-derived degrading Dietzia cinnamea strain P4 recently had its genome sequenced and annotated. This allowed employing the data on genes that are involved in the degradation of n-alkanes. To examine the physiological behavior of strain P4 in the presence of n-alkanes, the strain was grown under varying conditions of pH and temperature. D. cinnamea P4 was able to grow at pH 7.0-9.0 and at temperatures ranging from 35 ºC to 45 ºC. Experiments of gene expression by real-time quantitative RT-PCR throughout the complete growth cycle clearly indicated the induction of the regulatory gene alkU (TetR family) during early growth. During the logarithmic phase, a large increase in transcriptional levels of a lipid transporter gene was noted. Also, the expression of a gene that encodes the protein fused rubredoxin-alkane monooxygenase was enhanced. Both genes are probably under the influence of the AlkU regulator.


Assuntos
Actinomycetales/genética , Actinomycetales/metabolismo , Alcanos/metabolismo , Perfilação da Expressão Gênica , Genes Bacterianos , Hidrocarbonetos/metabolismo , Redes e Vias Metabólicas/genética , Actinomycetales/crescimento & desenvolvimento , Biotransformação , Concentração de Íons de Hidrogênio , Reação em Cadeia da Polimerase em Tempo Real , Temperatura
19.
Ciênc. rural ; Ciênc. rural (Online);40(8): 1844-1847, ago. 2010. ilus
Artigo em Inglês | LILACS | ID: lil-558764

RESUMO

Saturated aliphatic hydrocarbons (n-alkanes) were extracted from feed, orts, and bovine fecal samples using disposable, plastic 5mL-syringes as an alternative material to disposable columns, which are normally used in the liquid-solid extraction phase of n-alkanes. For both methods, the n-alkane extracts (carbon chain length between 31 and 36 atoms) were identified using gas chromatography. The linear regression between methods were: 1) feces: column Alkane=2.63+0.92×syringeAlkane [r²=0.94, square root of the mean square error (RMSE)=13.7mg kg-1, n=30] from which the intercept and the slope did not simultaneously differ from zero and unity (P>0.05), respectively; 2) feeds: column Alkane=0.36+1.12×syringeAlkane (r²=0.85, RMSE=1.9mg kg-1, n=21) from which the intercept and the slope did not simultaneously differ from zero and unity (P>0.05), respectively; 3) orts: column Alkane=0.49+0.92×syringeAlkane (r²=0.98, RMSE=1.2mg kg-1, n=15) from which the intercept and the slope did not simultaneously differ from zero and unity (P>0.05), respectively. Materials with low concentration of n-alkanes may affect the values obtained in both methods. These results suggested that disposable plastic syringes might be a viable alternative to columns thus, reducing analytical costs.


N-alcanos foram extraídos de alimentos, sobras e fezes de bovinos com a utilização de seringas plásticas descartáveis de 5mL como um material alternativo às colunas descartáveis que são normalmente utilizadas para a fase de extração líquido-sólido. Para ambos os métodos, os n-alcanos (cadeias de carbono entre 31 e 36 átomos) foram identificados usando cromatografia gasosa. As regressões lineares entre métodos foram: 1) fezes: coluna Alcano=2,63+0,92×seringa Alcano [r²=0,94, raiz do quadrado médio do erro (RMSE)=13,7mg kg-1, n=30], em que o intercepto e o coeficiente angular não diferiram simultaneamente de zero e um (P>0,05), respectivamente; 2) alimentos: coluna Alcano=0,36+1,12×seringa Alcano (r²=0,85, RMSE=1,9mg kg-1, n=21), em que o intercepto e o coeficiente angular não diferiram simultaneamente de zero e um (P>0,05), respectivamente; 3) sobras: coluna Alcano=0,49+0,92×seringa Alcano (r²=0,98, RMSE=1,2mg kg-1, n=15), em que o intercepto e o coeficiente angular não diferiram simultaneamente de zero e um (P>0,05), respectivamente. Materiais com baixas concentrações de alcanos podem afetar os valores obtidos em ambos os métodos de extração. Esses resultados sugerem que as seringas plásticas descartáveis podem ser uma alternativa viável às colunas, reduzindo o custo analítico.

20.
Ci. Rural ; 40(8)2010.
Artigo em Inglês | VETINDEX | ID: vti-707018

RESUMO

Saturated aliphatic hydrocarbons (n-alkanes) were extracted from feed, orts, and bovine fecal samples using disposable, plastic 5mL-syringes as an alternative material to disposable columns, which are normally used in the liquid-solid extraction phase of n-alkanes. For both methods, the n-alkane extracts (carbon chain length between 31 and 36 atoms) were identified using gas chromatography. The linear regression between methods were: 1) feces: column Alkane=2.63+0.92×syringeAlkane [r²=0.94, square root of the mean square error (RMSE)=13.7mg kg-1, n=30] from which the intercept and the slope did not simultaneously differ from zero and unity (P>0.05), respectively; 2) feeds: column Alkane=0.36+1.12×syringeAlkane (r²=0.85, RMSE=1.9mg kg-1, n=21) from which the intercept and the slope did not simultaneously differ from zero and unity (P>0.05), respectively; 3) orts: column Alkane=0.49+0.92×syringeAlkane (r²=0.98, RMSE=1.2mg kg-1, n=15) from which the intercept and the slope did not simultaneously differ from zero and unity (P>0.05), respectively. Materials with low concentration of n-alkanes may affect the values obtained in both methods. These results suggested that disposable plastic syringes might be a viable alternative to columns thus, reducing analytical costs.


N-alcanos foram extraídos de alimentos, sobras e fezes de bovinos com a utilização de seringas plásticas descartáveis de 5mL como um material alternativo às colunas descartáveis que são normalmente utilizadas para a fase de extração líquido-sólido. Para ambos os métodos, os n-alcanos (cadeias de carbono entre 31 e 36 átomos) foram identificados usando cromatografia gasosa. As regressões lineares entre métodos foram: 1) fezes: coluna Alcano=2,63+0,92×seringa Alcano [r²=0,94, raiz do quadrado médio do erro (RMSE)=13,7mg kg-1, n=30], em que o intercepto e o coeficiente angular não diferiram simultaneamente de zero e um (P>0,05), respectivamente; 2) alimentos: coluna Alcano=0,36+1,12×seringa Alcano (r²=0,85, RMSE=1,9mg kg-1, n=21), em que o intercepto e o coeficiente angular não diferiram simultaneamente de zero e um (P>0,05), respectivamente; 3) sobras: coluna Alcano=0,49+0,92×seringa Alcano (r²=0,98, RMSE=1,2mg kg-1, n=15), em que o intercepto e o coeficiente angular não diferiram simultaneamente de zero e um (P>0,05), respectivamente. Materiais com baixas concentrações de alcanos podem afetar os valores obtidos em ambos os métodos de extração. Esses resultados sugerem que as seringas plásticas descartáveis podem ser uma alternativa viável às colunas, reduzindo o custo analítico.

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