Estimating taxonomic and functional structure along a tropical estuary: linking metabolic traits and aspects of ecosystem functioning.

Microbial life forms are among the most ubiquitous on Earth, yet many remain understudied in Caribbean estuaries. We report on the prokaryote community composition of the Urabá Estuary in the Colombian Caribbean using 16S rRNA gene-transcript sequencing. We also assessed potential functional diversity through 38 metabolic traits inferred from 16S rRNA gene data. Water samples were collected from six sampling stations at two depths with contrasting light-penetration conditions along an approximately 100 km transect in the Gulf of Urabá in December 2019. Non-metric multidimensional scaling analysis grouped the samples into two distinct clusters along the transect and between depths. The primary variables influencing the prokaryote community composition were the sampling station, depth, salinity, and dissolved oxygen levels. Twenty percent of genera (i.e., 58 out 285) account for 95% of the differences between groups along the transect and among depths. All of the 38 metabolic traits studied showed some significant relationship with the tested environmental variables, especially salinity and except with temperature. Another non-metric multidimensional scaling analysis, based on community-weighted mean of traits, also grouped the samples in two clusters along the transect and over depth. Biodiversity facets, such as richness, evenness, and redundancy, indicated that environmental variations-stemming from river discharges-introduce an imbalance in functional diversity between surface prokaryote communities closer to the estuary's head and bottom communities closer to the ocean. Our research broadens the use of 16S rRNA gene transcripts beyond mere taxonomic assignments, furthering the field of trait-based prokaryote community ecology in transitional aquatic ecosystems.IMPORTANCEThe resilience of a dynamic ecosystem is directly tied to the ability of its microbes to navigate environmental gradients. This study delves into the changes in prokaryote community composition and functional diversity within the Urabá Estuary (Colombian Caribbean) for the first time. We integrate data from 16S rRNA gene transcripts (taxonomic and functional) with environmental variability to gain an understanding of this under-researched ecosystem using a multi-faceted macroecological framework. We found that significant shifts in prokaryote composition and in primary changes in functional diversity were influenced by physical-chemical fluctuations across the estuary's environmental gradient. Furthermore, we identified a potential disparity in functional diversity. Near-surface communities closer to the estuary's head exhibited differences compared to deeper communities situated farther away. Our research serves as a roadmap for posing new inquiries about the potential functional diversity of prokaryote communities in highly dynamic ecosystems, pushing forward the domain of multi-trait-based prokaryote community ecology.

Ecological and human health risk from exposure to contaminated sediments in a tropical river impacted by gold mining in Colombia.

Despite being one of the most important tropical biomes in the world, the Atrato River basin has experienced a critical ecological deterioration due to gold mining, posing a significant threat to wildlife and human health. In this study, we measured the concentrations of mercury (Hg) and arsenic (As) in sediments at various swamps within the basin. Classical indices were employed to assess the associated ecological and human health risks linked to exposure to these elements. The concentrations of Hg and As in the sediments ranged between 0.09 and 0.23 mg/kg and 0.59-2.68 mg/kg, respectively. The highest Hg values were found at upstream stations impacted by gold mining activities. For As, the highest levels were found near river mouth (except for station B), where agricultural practices are taken place. The contamination factor (CF) indicated that most of the sediments exhibited moderate contamination levels of Hg and As, depending on the specific sampling area. Conversely, the pollution load index (PLI) suggested a contamination level ranging from basic to moderate, with the exception of station B, which showed a progressive deterioration of the site. The geoaccumulation index (Igeo) indicated that the sediments were moderately contaminated with Hg, while showing signs of increasing contamination for As. According to the criteria for limiting effect concentrations (TEC), Hg concentrations exceeded the TEC at stations B and C, indicating a potential toxic risk to aquatic biota. A moderate potential ecological risk (PERI) was detected at downstream stations (D and E), and a high risk was detected at upstream stations (A, B and C). The hazard index (HI), used for non-carcinogenic risk assessment, suggested a risk of adverse effects on the population, particularly in children, with HI values exceeding 1. However, all lifetime cancer risk (TLCR) values fell within the acceptable range (1 × 10-6 to 1 × 10-4), indicating a negligible risk. Oral ingestion and inhalation were identified as the two primary routes of concern. This study serves as a valuable reference for risk assessment regarding exposures to environmental matrices that may not pose an immediate risk to human health.

Toxic metal(loids) levels in the aquatic environment and nuclear alterations in fish in a tropical river impacted by gold mining.

The Atrato River basin was protected by Colombian law due to anthropogenic impacts, mainly from illegal gold mining, which triggered a critical environmental health problem. In this study we quantified mercury (Hg), methylmercury (MeHg) and arsenic (As) concentrations in aquatic environmental matrices, and explored for the first-time nuclear degenerations in fish from the Atrato River. The median concentrations (µg/kg) for T-Hg, MeHg and As in fish were 195.0, 175.5, and 30.0; in sediments (µg/kg) 165.5, 13.8 and 3.1; and in water (ng/L), 154.7 for T-Hg and 2.1 for As. A 38% and 10% of the fish exceeded the WHO limit for the protection of populations at risk (200 µg Hg/kg) and for human consumption (500 µg Hg/kg); while As concentrations were below the international standard (1000 µg/kg) in all fish. The percentage of MeHg was 89.7% and the highest accumulation was observed in carnivorous fish (336.3 ± 245.6 µg/kg, p < 0.05) of high consumption, indicating risk to human health. In water, T-Hg concentrations exceeded the threshold effect value of 12 ng/L, whereas As concentrations were below the threshold of 10,000 ng/L, established by USEPA. On the contrary, 33% of the sediments exceeded the quality standard of 200 µg/kg for Hg. We found that Prochilodus magdalenae was the species with the highest susceptibility to nuclear alterations in its order, nuclear bud (CNB, 3.7 ± 5.4%), micronuclei (MN, 1.6 ± 2.5%) and binucleated cells (BC, 1.6 ± 2.3%). These results indicate that the species appears to be a good predictor of genotoxicity in the Atrato River. Fulton's condition factor (K) indicated that 31.7% of the fishes had poor growth condition, suggesting that the Atrato River basin needs to be monitored and restored in accordance with the agreements reached in the Minamata Convention on Mercury.

A human health risk assessment of methylmercury, arsenic and metals in a tropical river basin impacted by gold mining in the Colombian Pacific region.

The Atrato River basin is one of the most biodiverse areas worldwide, and paradoxically, it is one of the sites in Colombia with the highest environmental impact from gold mining. This study assessed the distribution of Hg, As, Pb, and Cd in 47 fish species (n = 1372) and the accumulative human health risk in inhabitants (n = 2325) from 13 municipalities located along the Atrato River basin. The results revealed that Hg and As in fish present a high potential human health risk based on their mean concentrations. Estimated daily intake (EDI) calculations showed that humans could present detrimental health effects, while that target hazard quotient (THQ) above 1 showed that the exposed population might experience noncarcinogenic health risks, mainly from the accumulative effects of Hg (80.4%) and As (18.2%). The species that would most affect the health of the inhabitants are carnivorous H. malabaricus, A. pardalis, P. schultzi, R. quelen, and C. kraussii, which are among the fourteen most consumed in the region. These species had values of estimated weekly intake (EWI) above the provisional tolerable weekly intake thresholds for MeHg (PTWI of 1.6 and 3.2 µg/kg bw/week for adults and children, respectively) in 7 of the 13 localities evaluated. According to the surveys, the calculated weekly allowable fish amount (MFW) showed that carnivorous fish may generate adverse effects on the consumers because the allowed MeHg is about 2 times higher than the upper reference limit. Other results indicate a significant carcinogenic health risk, mainly from As, in 8 of the 13 localities evaluated. Due to the high rates of unsatisfied basic needs and the monetary poverty in the region, the possibility that inhabitants can replace fish as the principal source of protein is low. Therefore, a food guidance is required to avoid risks, obtain nutritional benefits, and sustain fish populations.

Dataset of concentrations of mercury and methylmercury in fish from a tropical river impacted by gold mining in the Colombian Pacific.

This data article includes information on the impact of gold mining along five zones of a tropical river in the Pacific region of Colombia. The concentrations of total mercury (THg), total length, mertimercury (MeHg) were determined in 16 species of fish. With this information, it was shown as the concentrations of mercury in fish are influenced by the distribution in the contamination along the Atrato River Basin [1]. Further, THg and MeHg concentrations were related with the trophic level to show biomagnification, and with total length to show bioaccumulation, which is important to establish the potential risk to the environment and also to the health of the inhabitants living along the basin from the consumption of fish.

The unknown diversity of the genus Characidium (Characiformes: Crenuchidae) in the Chocó biogeographic region, Colombian Andes: Two new species supported by morphological and molecular data.

Two new species of Characidium, C. tatama and C. dule, are described from the biogeographic Chocó region in western Colombia. Both new species are supported by both morphological and molecular data. C. tatama from the San Juan River in the Pacific and C. dule from the Atrato River in the Caribbean portion of Colombia are both distributed in the upper and lower portions of these basins. An extensive comparison with other trans- and cis-Andean species of Characidium was made, in addition to species delimitation, using COI sequences by distinct methods (GMYC, ABGD, bPTP).