Can morphological traits explain species-specific differences in meta-analyses? A case study of forest beetles.

Meta-analyses have become a valuable tool with which to synthesize effects across studies, but in ecology and evolution, they are often characterized by high heterogeneity, where effect sizes vary between studies. Much of this heterogeneity can be attributed to species-specific differences in responses to predictor variables. Here, we aimed to incorporate a novel trait-based approach to explain species-specific differences in a meta-analysis by testing the ability of morphological traits to explain why the effectiveness of flight-intercept trap design varies according to beetle species, a critical issue in forest pest management. An existing morphological trait database for forest beetles was supplemented, providing trait data for 97 species, while data from a previous meta-analysis on capture rates of bark or woodboring beetles according to different trap designs were updated. We combined these sources by including nine morphological traits as moderators in meta-analysis models, for five different components of trap design. Traits were selected based on theoretical hypotheses relating to beetle movement, maneuverability, and sensory perception. We compared the performance of morphological traits as moderators versus guild, taxonomic family, and null meta-analysis models. Morphological traits for the effect of trap type (panel vs. multiple-funnel) on beetle capture rates improved model fit (AICc ), reduced within-study variance (σ2 ), and explained more variation (McFadden's pseudo-R2 ) compared with null, guild, and taxonomic family models. For example, morphological trait models explained 10% more of the variance (pseudo-R2 ) when compared with a null model. However, using traits was less informative to explain how detailed elements of trap design such as surface treatment and color influence capture rates. The reduction of within-study variance when accounting for morphological traits demonstrates their potential value for explaining species-specific differences. Morphological traits associated with flight efficiency, maneuverability, and eye size were particularly informative for explaining the effectiveness of trap type. This could lead to improved predictability of optimal trap design according to species. Therefore, morphological traits could be a valuable tool for understanding species-specific differences in community ecology, but other causes of heterogeneity across studies, such as forest type and structure, require further investigation.

Genetic diversity, phylogenetic and phylogeographic analyses of Oncideres impluviata (Germar, 1823) (Coleoptera: Cerambycidae) in Rio Grande do Sul state, Brazil

ABSTRACT The Cerambycidae Oncideres impluviata (Germar, 1823) is an important insect pest for Acacia mearnsii De Wild in Southern Brazil. The damage caused by their girdling behavior reduces tree productivity, specially in the early years of plant establishment, when girdling is performed on the main trunk of trees. Here, we used a fragment of the mtDNA COI gene to analyze the genetic diversity, population structure and demography of O. impluviata in Southern Brazil, as well as to present the first hypothesis of phylogenetic relationships among species of the genus Oncideres. Our results identified five distinct haplotypes among the populations of O. impluviata, with the most common haplotype identified as O.imp_COI_01. The phylogenetic inferences corroborated the monophyly of O. impluviata with maximum statistical support. In addition, the phylogeny recovered three main population strains that are largely congruent with the haplotype network, which includes two lineages that are found in different edaphic regions of Rio Grande do Sul (Serra do Sudeste and Encosta Inferior do Nordeste). This is the first molecular phylogenetic assessment of O. impluviata. Our findings provide insights into the evolution of a significant species for the Brazilian forestry sector, as well as new resources for planning of pest management strategies.

Feasibility of Systemically Applied dsRNAs for Pest-Specific RNAi-Induced Gene Silencing in White Oak.

The efficacy of double-stranded RNA (dsRNA) in inducing host specific gene knockdown and mortality has been demonstrated in a multitude of insects and dsRNAs are being integrated for pest suppression in a variety of agricultural and horticultural crops. However, less attention has been applied to their use in forest settings, despite the demonstrated susceptibility of multiple forest pests to RNAi. Prior to implementation for forest pest suppression, characterization of the specificity, efficacy, and behavior of dsRNAs in the environment is essential. Therefore, we investigated the translocation and retention of exogenously applied dsRNA in an economically and ecologically significant hardwood tree when applied hydroponically. White oak (Quercus alba, L.) seedlings were exposed to dsRNAs as a root soak, and at 1, 3, 5, and 7 days post-exposure were destructively sampled, divided into stem and leaf tissue, and the RNA extracted. Gel electrophoresis was used to visualize the presence of exogenous dsRNA in treated seedling material and Sanger sequencing was used to further verify recovery of treatment dsRNAs. Both techniques confirmed the presence of the exogenously applied dsRNAs in each tissue type at each sample interval, demonstrating successful uptake and translocation of dsRNAs through white oak tissues. Our findings support root uptake as a viable delivery method for dsRNAs in hardwood seedlings, which could provide single tree protection from selected tree feeding pests or pathogens.

Tree and shrub recruitment under environmental disturbances in temperate forests in the south of Mexico.

BACKGROUND: Recruitment after disturbance events depends on many factors including the environmental conditions of the affected area and the vegetation that could potentially grow in such affected areas. To understand the regeneration characteristics that occurs in temperate forests, we evaluated differences in the number of seedlings from trees and shrubs along an altitudinal gradient in Sierra Norte of Oaxaca, Mexico in different biological, climatic, edaphic, light, topographic, and disturbance regimes. Here, we aimed to test the hypothesis that the environmental disturbances influence on recruitment (positive or adverse influence). We sampled the vegetation to obtain recruitment and adult data, and species composition. RESULTS: We identified three disturbance regimes: areas affected by forest harvesting, areas exposed to pest management, and undisturbed areas. We identified 29 species of trees and shrubs (9 species of the genus Pinus, 1 species of the genus Abies, 10 species of the genus Quercus, and 9 of other species of broadleaf). We found that both environmental conditions and disturbances influence the recruitment of vegetation in the study area. In particular, disturbances had a positive influence on the regeneration of oak and other broadleaf species by increasing the number of seedlings, and a negative influence on the regeneration of conifers by decreasing the recruitment. Because the recruitment of conifers is more likely in undisturbed areas (sites over 3050 m). CONCLUSIONS: Environmental factors and anthropogenic disturbances can alter the recruitment of forests. Consequently, knowing which factors are key for the recruitment of vegetation is fundamental for decision-making processes. This is particularly relevant in areas as the one in this study because it provides knowledge to local people on vegetation recovery for a proper management of their biological resources.

Chromosome-level genome assembly reveals genomic architecture of northern range expansion in the mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae).

Genome sequencing methods and assembly tools have improved dramatically since the 2013 publication of draft genome assemblies for the mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae). We conducted proximity ligation library sequencing and scaffolding to improve contiguity, and then used linkage mapping and recent bioinformatic tools for correction and further improvement. The new assemblies have dramatically improved contiguity and gaps compared to the originals: N50 values increased 26- to 36-fold, and the number of gaps were reduced by half. Ninety per cent of the content of the assemblies is now contained in 12 and 11 scaffolds for the female and male assemblies, respectively. Based on linkage mapping information, the 12 largest scaffolds in both assemblies represent all 11 autosomal chromosomes and the neo-X chromosome. These assemblies now have nearly chromosome-sized scaffolds and will be instrumental for studying genomic architecture, chromosome evolution, population genomics, functional genomics, and adaptation in this and other pest insects. We also identified regions in two chromosomes, including the ancestral-X portion of the neo-X chromosome, with elevated differentiation between northern and southern Canadian populations.

Derivation of Pheromone-Based Larval Thresholds in Spruce Budworm Accounting for Distance to Defoliated Forest Stands.

Spruce budworm, Choristoneura fumiferana Clem. (Lepidoptera: Tortricidae), is the most severe defoliator of Pinaceae in Nearctic boreal forests. Three tools widely used to guide large-scale management decisions (year-to-year defoliation maps; density of overwintering second instars [L2]; number of males at pheromone traps) were integrated to derive pheromone-based thresholds corresponding to specific intergenerational transitions in larval densities (L2i → L2i+1), taking into account the novel finding that threshold estimates decline with distance to defoliated forest stands (DIST). Estimates of thresholds were highly variable between years, both numerically and in terms of interactive effects of L2i and DIST, which limit their heuristic value. In the context of early intervention strategy (L2i+1 > 6.5 individuals per branch), however, thresholds fluctuated within relatively narrow intervals across wide ranges of L2i and DIST, and values of 40-200 males per trap may thus be used as general guideline.

Oral Ingestion of Bacterially Expressed dsRNA Can Silence Genes and Cause Mortality in a Highly Invasive, Tree-Killing Pest, the Emerald Ash Borer.

RNA interference (RNAi) is a naturally occurring process inhibiting gene expression, and recent advances in our understanding of the mechanism have allowed its development as a tool against insect pests. A major challenge for deployment in the field is the development of convenient and efficient methods for production of double stranded RNA (dsRNA). We assessed the potential for deploying bacterially produced dsRNA as a bio-pesticide against an invasive forest pest, the emerald ash borer (EAB). EAB feeds on the cambial tissue of ash trees (Fraxinus spp.), causing rapid death. EAB has killed millions of trees in North America since its discovery in 2002, prompting the need for innovative management strategies. In our study, bacterial expression and synthesis of dsRNA were performed with E. coli strain HT115 using the L4440 expression vector. EAB-specific dsRNAs (shi and hsp) over-expressed in E. coli were toxic to neonate EAB after oral administration, successfully triggering gene silencing and subsequent mortality; however, a non-specific dsRNA control was not included. Our results suggest that ingestion of transformed E. coli expressing dsRNAs can induce an RNAi response in EAB. To our knowledge, this is the first example of an effective RNAi response induced by feeding dsRNA-expressing bacteria in a forest pest.

Optimizing Use of Girdled Ash Trees for Management of Low-Density Emerald Ash Borer (Coleoptera: Buprestidae) Populations.

Effective survey methods to detect and monitor recently established, low-density infestations of emerald ash borer, Agrilus planipennis Fairmaire (Coleoptera: Buprestidae), remain a high priority because they provide land managers and property owners with time to implement tactics to slow emerald ash borer population growth and the progression of ash mortality. We evaluated options for using girdled ash (Fraxinus spp.) trees for emerald ash borer detection and management in a low-density infestation in a forested area with abundant green ash (F. pennsylvanica). Across replicated 4-ha plots, we compared detection efficiency of 4 versus 16 evenly distributed girdled ash trees and between clusters of 3 versus 12 girdled trees. We also examined within-tree larval distribution in 208 girdled and nongirdled trees and assessed adult emerald ash borer emergence from detection trees felled 11 mo after girdling and left on site. Overall, current-year larvae were present in 85-97% of girdled trees and 57-72% of nongirdled trees, and larval density was 2-5 times greater on girdled than nongirdled trees. Low-density emerald ash borer infestations were readily detected with four girdled trees per 4-ha, and 3-tree clusters were as effective as 12-tree clusters. Larval densities were greatest 0.5 ± 0.4 m below the base of the canopy in girdled trees and 1.3 ± 0.7 m above the canopy base in nongirdled trees. Relatively few adult emerald ash borer emerged from trees felled 11 mo after girdling and left on site through the following summer, suggesting removal or destruction of girdled ash trees may be unnecessary. This could potentially reduce survey costs, particularly in forested areas with poor accessibility.

The Impact of Trap Type and Design Features on Survey and Detection of Bark and Woodboring Beetles and Their Associates: A Review and Meta-Analysis.

A large literature on the survey and detection of forest Coleoptera and their associates exists. Identification of patterns in the effect of trap types and design features among guilds and families of forest insects would facilitate the optimization and development of intercept traps for use in management programs. We reviewed the literature on trapping bark and woodboring beetles and their associates and conducted meta-analyses to examine patterns in effects across guilds and families; we observed the following general patterns: (a) Panel traps were superior to multiple-funnel traps, (b) bark beetles and woodborers were captured in higher numbers in traps treated with a surface treatment to make them slippery than untreated traps,