Chytrid infections exhibit historical spread and contemporary seasonality in a declining stream-breeding frog.

Species with extensive geographical ranges pose special challenges to assessing drivers of wildlife disease, necessitating collaborative and large-scale analyses. The imperilled foothill yellow-legged frog (Rana boylii) inhabits a wide geographical range and variable conditions in rivers of California and Oregon (USA), and is considered threatened by the pathogen Batrachochytrium dendrobatidis (Bd). To assess drivers of Bd infections over time and space, we compiled over 2000 datapoints from R. boylii museum specimens (collected 1897-2005) and field samples (2005-2021) spanning 9° of latitude. We observed a south-to-north spread of Bd detections beginning in the 1940s and increase in prevalence from the 1940s to 1970s, coinciding with extirpation from southern latitudes. We detected eight high-prevalence geographical clusters through time that span the species' geographical range. Field-sampled male R. boylii exhibited the highest prevalence, and juveniles sampled in autumn exhibited the highest loads. Bd infection risk was highest in lower elevation rain-dominated watersheds, and with cool temperatures and low stream-flow conditions at the end of the dry season. Through a holistic assessment of relationships between infection risk, geographical context and time, we identify the locations and time periods where Bd mitigation and monitoring will be critical for conservation of this imperilled species.

Fish fauna of the Río San Pedro and Río La Pasión, Usumacinta River Basin, Guatemala / Ictiofauna del Río San Pedro y Río La Pasión, Usumacinta River Basin, Guatemala

Abstract The Río San Pedro and Río La Pasión lie within the Usumacinta River Basin, a globally significant center of freshwater fish diversity. Both rivers are listed among Central America's top 50 regions for conserving freshwater biodiversity. This study presents an updated checklist of 70 fish species, of which six are non-native to the Usumacinta River Basin. From these species, 69 are reported from the Río La Pasión and 56 reported from the Río San Pedro, representing higher species richness than previously reported. The checklist derives from a systematic survey of fishes conducted in 2019 and records available in public databases and published literature. Seventy-eight percent of the species were reported in both rivers, and Cichlidae and Poeciliidae had the most species. Secondary species represent 59% of the species reported, followed by peripheral species with 22% of the species. The species with highest fidelity in Río La Pasión were the armored catfish Pterygopichthys spp. and the livebearer Gambusia sexradiata; and the cichlids Thorichthys meeki and Oscura heterospila had highest fidelity in the Río San Pedro. Thorichthys helleri was widely distributed in both rivers. According to the IUCN Red List of Threatened Species, there are four species classified as Vulnerable in Río La Pasión. However, 62% of the species are of Least Concern, 25% of the species are Data Deficient, and 6% are listed as Not Evaluated. More research is needed to document the status of the fish fauna, and improved habitat protection is required to conserve stocks.

Resumen El río San Pedro y el río La Pasión se encuentran dentro de la cuenca del río Usumacinta, un centro de diversidad de peces de agua dulce de importancia mundial. Ambos ríos figuran entre las 50 regiones principales de América Central para conservar la biodiversidad de agua dulce. Este estudio presenta un listado actualizado de 70 especies de peces, de las cuales 6 son especies no nativas para la cuenca del Río Usumacinta. De estas especies, 69 se reportan para el Río La Pasión y 56 para el río San Pedro, lo que representa una riqueza de especies más alta que la reportada previamente. La lista de verificación se deriva de un muestreo sistemático de peces realizado en 2019 y registros disponibles en bases de datos públicas y literatura publicada. El 78% de las especies se reportan en ambos ríos, siendo Cichlidae y Poeciliidae las familias con mayor riqueza. Las especies con mayor fidelidad en Río La Pasión fueron el bagre acorazado Pterygopichthys spp. y el pez vivíparo Gambusia sexradiata; y los cíclidos Thorichthys meeki y Oscura heterospila tuvieron mayor fidelidad en el Río San Pedro. Thorichthys helleri se distribuyó ampliamente en ambos ríos. Según la Lista Roja de Especies Amenazadas de la UICN, existen cuatro especies clasificadas como Vulnerable en el Río La Pasión. Sin embargo, el 62 % de las especies son de Preocupación Menor, el 25 % de las especies tienen Datos Insuficientes y el 6 % se enumeran como No Evaluadas. Se necesita más investigación para documentar el estado de la fauna de peces, y se requiere una mejor protección del hábitat para conservar las poblaciones.

Shifting taxonomic and functional community composition of rivers under land use change.

Land use intensification has led to conspicuous changes in plant and animal communities across the world. Shifts in trait-based functional composition have recently been hypothesized to manifest at lower levels of environmental change when compared to species-based taxonomic composition; however, little is known about the commonalities in these responses across taxonomic groups and geographic regions. We investigated this hypothesis by testing for taxonomic and geographic similarities in the composition of riverine fish and insect communities across gradients of land use in major hydrological regions of the conterminous United States. We analyzed an extensive data set representing 556 species and 33 functional trait modalities from 8023 fish communities and 1434 taxa and 50 trait modalities from 5197 aquatic insect communities. Our results demonstrate abrupt threshold changes in both taxonomic and functional community composition due to land use conversion. Functional composition consistently demonstrated lower land use threshold responses compared to taxonomic composition for both fish (urban p = 0.069; agriculture p = 0.029) and insect (urban p = 0.095; agriculture p = 0.043) communities according to gradient forest models. We found significantly lower thresholds for urban versus agricultural land use for fishes (taxonomic and functional p < 0.001) and insects (taxonomic p = 0.001; functional p = 0.033). We further revealed that threshold responses in functional composition were more geographically consistent than for taxonomic composition to both urban and agricultural land use change. Traits contributing the most to overall functional composition change differed along urban and agricultural land gradients and conformed to predicted ecological mechanisms underpinning community change. This study points to reliable early-warning thresholds that accurately forecast compositional shifts in riverine communities to land use conversion, and highlight the importance of considering trait-based indicators of community change to inform large-scale land use management strategies and policies.

Short-term responses of macroinvertebrate assemblages to the "ten-year fishing ban" in the largest highland lake of the Yangtze basin.

The rapid decline of freshwater biodiversity caused by overfishing has led to the implementation of a series of conservation measures, including fishing bans. However, existing studies have mostly focused on the effects of fishing bans on economically important species, while impacts on freshwater macroinvertebrates in lake ecosystems have been rarely studied. This study used a before-and-after methodology to determine the short-term effects of the "ten-year fishing ban" on the macroinvertebrates of the Dianchi Lake, the largest highland freshwater lake in the upper Yangtze basin, between 2015 and 2022. Following the fishing ban, the overall macroinvertebrate species richness (median [interquartile]) across sites increased from 4 [2-6] to 5 [4-7]. The total density increased from 128 [80-272] to 212 [140-325] n/m2. The median biomass increased from 0.18 [0.08-0.41] to 0.51 [0.26-2.36] g/m2. In particular, the Chironomidae density in the offshore sites increased from 16.00 [0.00-32.00] to 33.30 [16.00-48.00] n/m2, and the biomass increased from 0.03 [0.00-0.09] to 0.16 [0.07-0.22] g/m2. Within the inshore sites, the aquatic insect density increased from 4 [1.33-15.33] to 56 [22.00-86.67] n/m2. The Malacostraca density increased from 34.67 [11.67-95.33] to 110 [53.33-223.33] n/m2, and the biomass increased from 0.43 [0.11-1.00] to 1.48 [0.50-2.00] g/m2. Two endangered Margarya species were rediscovered at multiple sites compared to the pre-fishing ban period. A significant change in macroinvertebrate community structure across the lake was observed, which can be largely attributed to the fishing ban. The immediate increase in species richness, density, and biomass of most macroinvertebrate species suggests a combination of effects from both reduced exploitation pressure and lessened disturbances on lake habitats. The findings indicate that the fishing ban is beneficial for the recovery of most macroinvertebrate species in freshwater lakes.

Ecological impacts of unsustainable sand mining: urgent lessons learned from a critically endangered freshwater cetacean.

Sand mining, which has tripled in the last two decades, is an emerging concern for global biodiversity. However, the paucity of sand mining data worldwide prevents understanding the extent of sand mining impacts and how it affects wildlife populations and ecosystems, which is critical for timely mitigation and conservation actions. Integrating remote sensing and field surveys over 14 years, we investigated mining impacts on the critically endangered Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) in Dongting Lake, China. We found that sand mining presented a consistent, widespread disturbance in Dongting Lake. Porpoises strongly avoided mining sites, especially those of higher mining intensity. The extensive sand mining significantly contracted the porpoise's range and restricted their habitat use in the lake. Water traffic for sand transportation further blocked the species's river-lake movements, affecting the population connectivity. In addition, mining-induced loss of near-shore habitats, a critical foraging and nursery ground for the porpoise, occurred in nearly 70% of the water channels of our study region. Our findings provide the first empirical evidence of the impacts of unregulated sand extractions on species distribution. Our spatio-temporally explicit approach and findings support regulation and conservation, yielding broader implications for sustainable sand mining worldwide.

Threats, challenges and sustainable conservation strategies for freshwater biodiversity.

Increasing human population, deforestation and man-made climate change are likely to exacerbate the negative effects on freshwater ecosystems and species endangerment. Consequently, the biodiversity of freshwater continues to dwindle at an alarming rate. However, this particular topic lacks sufficient attention from conservation ecologists and policymakers, resulting in a dearth of data and comprehensive reviews on freshwater biodiversity, specifically. Despite the widespread awareness of risks to freshwater biodiversity, organized action to reverse this decline has been lacking. This study reviews prospective conservation and management strategies for freshwater biodiversity and their associated challenges, identifying current key threats to freshwater biodiversity. Engineered nanomaterials pose a significant threat to aquatic species, and will make controlling health risks to freshwater biodiversity increasingly challenging in the future. When fish are exposed to nanoparticles, the surface area of their respiratory and ion transport systems can decline to 60% of their total surface area, posing serious health risks. Also, about 50% of freshwater fish species are threatened by climate change, globally. Freshwater biodiversity that is heavily reliant on calcium perishes when the calcium content of their environments degrades, posing another severe threat to world biodiversity. To improve biodiversity, variables such as species diversity, population and water quality, and habitat are essential components that must be monitored continuously. Existing research on freshwater biota and ecosystems is still lacking. Therefore, data collection and the establishment of specialized policies for the conservation of freshwater biodiversity should be prioritized.

Cost-effective management measures for coastal aquifers affected by saltwater intrusion and climate change.

Sustainable management of natural water resources and food security in the face of changing climate conditions is critical to the livelihood of coastal communities. Increasing inundation and saltwater intrusion (SWI) will likely adversely affect agricultural production and the associated beach access for tourism. This study uses an integrated surface-ground water model to introduce a new approach for retardation of SWI that consists of placing aquifer fill materials along the existing shoreline using Coastal Land Reclamation (CLR). The modeling results suggest that the artificial aquifer materials could be designed to decrease SWI by increasing the infiltration area of coastal precipitation, collecting runoffs from the catchment area, and applying treated wastewater or desalinated brackish water-using coastal wave energy to reduce water treatment costs. The SEAWAT model was applied to verify that it correctly addressed Henry's problem and then applied to the Biscayne aquifer, Florida, USA. In this study, to better inform Coastal Aquifer Management (CAM), we developed four modeling scenarios, namely, Physical Surface Barriers (PSB), including the artificial aquifer widths, permeability, and side slopes and recharge. In the base case scenario without artificial aquifer placement, results show that seawater levels would increase aquifer salinity and displace large amounts of presently available fresh groundwater. More specifically, for the Biscayne aquifer, approximately 0.50% of available fresh groundwater will be lost (that is, 41,192 m3) per km of the width of the aquifer considering the increasing seawater level. Furthermore, the results suggest that placing the PSB aquifer with a smaller permeability of <100 m per day at a width of approximately 615 m increases the available fresh groundwater by approximately 45.20 and 43.90% per km of shoreline, respectively. Similarly, decreasing the slope on the aquifer-ocean side and increasing the aquifer recharge will increase freshwater availability by about 43.90 and 44.50% per km of the aquifer. Finally, placing an aquifer fill along the shallow shoreline increases net revenues to the coastal community through increased agricultural production and possibly tourism that offset fill placement and water treatment costs. This study is useful for integrated management of coastal zones by delaying aquifer salinity, protecting fresh groundwater bodies, increasing agricultural lands, supporting surface water supplies by harvesting rainfall and flash flooding, and desalinating saline water using wave energy. Also, the feasibility of freshwater storage and costs for CAM is achieved in this study.

Habitat configuration of the Yangtze finless porpoise in Poyang Lake under a shifting hydrological regime.

Habitats of freshwater cetaceans are under increasing threats of deterioration globally. A complete understanding of long-term variations of habitat configurations is therefore critical. Poyang Lake in China contains a large and stable population of the Yangtze finless porpoise, a critically endangered freshwater cetacean species. However, constant water decline and intensified human activities in the lake since 2000 have led to uncertainty for porpoise conservation. We address this issue via remote sensing and hydrodynamic modeling of nine environmental variables during different seasons over the past two decades. The MaxEnt model was used to extrapolate changes in likely habitat configurations of the porpoise, and MARXAN algorithms delineated habitat protection priorities in different seasons. Results illustrate that flow velocity, water depth, Chl-a concentration, distance to grassland and boats greatly affect the porpoise distribution. Shifts in these environmental variables can lead to significant habitat decreases in all seasons. In particular, unstable hydrological regimes may force the porpoises to live in habitats with lower water depths for suitable flow velocity conditions in the dry season, and habitats are increasingly infringed by grassland and mudflats. High protection priority areas such as the northern channel and the estuaries of the tributaries urgently need long-term systematic and targeted surveys of ecosystem functionality and flexible management of anthropogenic activities. Combining remote sensing with hydrodynamic and species distribution models can also assist in understanding the situation of other aquatic species.

Artificial light at night (ALAN) affects the downstream movement behaviour of the critically endangered European eel, Anguilla anguilla.

Artificial light at night (ALAN) is considered one of the most pervasive forms of environmental pollution. It is an emerging threat to freshwater biodiversity and can influence ecologically important behaviours of fish. The European eel (Anguilla anguilla) is a critically endangered catadromous species that migrates downstream to the ocean to spawn in the Sargasso Sea. Given the pervasive nature of ALAN, many eel will navigate through artificially lit routes during their seaward migration, and although considered negatively phototactic, their response has yet to be quantified. We investigated the response of downstream moving European eel to simulated ALAN using a Light Emitting Diode unit in an experimental flume. We presented two routes of passage under: (1) a dark control (both channels unlit), (2) low ALAN (treatment channel lit to ca. 5 lx), or (3) high ALAN (treatment channel lit to ca. 20 lx). Eel were: (i) more likely to reject an illuminated route when exposed to high levels of ALAN; (ii) less likely to select the illuminated channel when given a choice; and (iii) passed downstream more rapidly when the illuminated route was selected. This study quantified the response of the critically endangered European eel to ALAN under an experimental setting, providing the foundations for future field based research to validate these findings, and offering insight on the ecological impacts of this major environmental pollutant and driver of global change.

Bending the Curve of Global Freshwater Biodiversity Loss: An Emergency Recovery Plan.

Despite their limited spatial extent, freshwater ecosystems host remarkable biodiversity, including one-third of all vertebrate species. This biodiversity is declining dramatically: Globally, wetlands are vanishing three times faster than forests, and freshwater vertebrate populations have fallen more than twice as steeply as terrestrial or marine populations. Threats to freshwater biodiversity are well documented but coordinated action to reverse the decline is lacking. We present an Emergency Recovery Plan to bend the curve of freshwater biodiversity loss. Priority actions include accelerating implementation of environmental flows; improving water quality; protecting and restoring critical habitats; managing the exploitation of freshwater ecosystem resources, especially species and riverine aggregates; preventing and controlling nonnative species invasions; and safeguarding and restoring river connectivity. We recommend adjustments to targets and indicators for the Convention on Biological Diversity and the Sustainable Development Goals and roles for national and international state and nonstate actors.

Fine-scale genetic structure of the European bitterling at the intersection of three major European watersheds.

BACKGROUND: Anthropogenic factors can have a major impact on the contemporary distribution of intraspecific genetic diversity. Many freshwater fishes have finely structured and locally adapted populations, but their natural genetic structure can be affected by river engineering schemes across river basins, fish transfers in aquaculture industry and conservation management. The European bitterling (Rhodeus amarus) is a small fish that is a brood parasite of freshwater mussels and is widespread across continental Europe. Its range recently expanded, following sharp declines in the 1970s and 1980s. We investigated its genetic variability and spatial structure at the centre of its distribution at the boundary of three watersheds, testing the role of natural and anthropogenic factors in its genetic structure. RESULTS: Sequences of mitochondrial cytochrome B (CYTB) revealed that bitterling colonised central Europe from two Ponto-Caspian refugia, which partly defines its contemporary genetic structure. Twelve polymorphic microsatellite loci revealed pronounced interpopulation differentiation, with significant small-scale differentiation within the same river basins. At a large scale, populations from the Baltic Sea watershed (middle Oder and Vistula basins) were distinct from those from the Black Sea watershed (Danube basin), while populations from rivers of the North Sea watershed (Rhine, Elbe) originated from the admixture of both original sources. Notable exceptions demonstrated the potential role of human translocations across watersheds, with the upper River Oder (Baltic watershed) inhabited by fish from the Danube basin (Black Sea watershed) and a population in the southern part of the River Elbe (North Sea watershed) basin possessing a signal of admixture from the Danube basin. CONCLUSIONS: Hydrography and physical barriers to dispersal are only partly reflected in the genetic structure of the European bitterling at the intersection of three major watersheds in central Europe. Drainage boundaries have been obscured by human-mediated translocations, likely related to common carp, Cyprinus carpio, cultivation and game-fish management. Despite these translocations, populations of bitterling are significantly structured by genetic drift, possibly reinforced by its low dispersal ability. Overall, the impact of anthropogenic factors on the genetic structure of the bitterling populations in central Europe is limited.

Freshwater Megafauna: Flagships for Freshwater Biodiversity under Threat.

Freshwater biodiversity is highly threatened and is decreasing more rapidly than its terrestrial or marine counterparts; however, freshwaters receive less attention and conservation investment than other ecosystems do. The diverse group of freshwater megafauna, including iconic species such as sturgeons, river dolphins, and turtles, could, if promoted, provide a valuable tool to raise awareness and funding for conservation. We found that freshwater megafauna inhabit every continent except Antarctica, with South America, Central Africa, and South and Southeast Asia being particularly species rich. Freshwater megafauna co-occur with up to 93% of mapped overall freshwater biodiversity. Fifty-eight percent of the 132 megafauna species included in the study are threatened, with 84% of their collective range falling outside of protected areas. Of all threatened freshwater species, 83% are found within the megafauna range, revealing the megafauna's capacity as flagship and umbrella species for fostering freshwater conservation.

A global review on ambient Limestone-Precipitating Springs (LPS): Hydrogeological setting, ecology, and conservation.

Springs are biodiversity hotspots and unique habitats that are threatened, especially by water overdraft. Here we review knowledge on ambient-temperature (non-geothermal) freshwater springs that achieve sufficient oversaturation for CaCO3 -by physical CO2 degassing and activity of photoautotrophs- to deposit limestone, locally resulting in scenic carbonate structures: Limestone-Precipitating Springs (LPS). The most characteristic organisms in these springs are those that contribute to carbonate precipitation, e.g.: the mosses Palustriella and Eucladium, the crenophilous desmid Oocardium stratum, and cyanobacteria (e.g., Rivularia). These organisms appear to be sensitive to phosphorus pollution. Invertebrate diversity is modest, and highest in pools with an aquatic-terrestrial interface. Internationally, comprehensive legislation for spring protection is still relatively scarce. Where available, it covers all spring types. The situation in Europe is peculiar: the only widespread spring type included in the EU Habitat Directive is LPS, mainly because of landscape aesthetics. To support LPS inventorying and management to meet conservation-legislation requirements we developed a general conceptual model to predict where LPS are more likely to occur. The model is based on the pre-requisites for LPS: an aquifer lithology that enables build-up of high bicarbonate and Ca(2+) to sustain CaCO3 oversaturation after spring emergence, combined with intense groundwater percolation especially along structural discontinuities (e.g., fault zones, joints, schistosity), and a proper hydrogeological structure of the discharging area. We validated this model by means of the LPS information system for the Emilia-Romagna Region (northern Italy). The main threats to LPS are water diversion, nutrient enrichment, and lack of awareness by non-specialized persons and administrators. We discuss an emblematic case study to provide management suggestions. The present review is devoted to LPS but the output of intense ecological research in Central Europe during the past decades has clearly shown that effective conservation legislation should be urgently extended to comprise all types of spring habitats.

Knowledge co-production and boundary work to promote implementation of conservation plans.

Knowledge co-production and boundary work offer planners a new frame for critically designing a social process that fosters collaborative implementation of resulting plans. Knowledge co-production involves stakeholders from diverse knowledge systems working iteratively toward common vision and action. Boundary work is a means of creating permeable knowledge boundaries that satisfy the needs of multiple social groups while guarding the functional integrity of contributing knowledge systems. Resulting products are boundary objects of mutual interest that maintain coherence across all knowledge boundaries. We examined how knowledge co-production and boundary work can bridge the gap between planning and implementation and promote cross-sectoral cooperation. We applied these concepts to well-established stages in regional conservation planning within a national scale conservation planning project aimed at identifying areas for conserving rivers and wetlands of South Africa and developing an institutional environment for promoting their conservation. Knowledge co-production occurred iteratively over 4 years in interactive stake-holder workshops that included co-development of national freshwater conservation goals and spatial data on freshwater biodiversity and local conservation feasibility; translation of goals into quantitative inputs that were used in Marxan to select draft priority conservation areas; review of draft priority areas; and packaging of resulting map products into an atlas and implementation manual to promote application of the priority area maps in 37 different decision-making contexts. Knowledge co-production stimulated dialogue and negotiation and built capacity for multi-scale implementation beyond the project. The resulting maps and information integrated diverse knowledge types of over 450 stakeholders and represented >1000 years of collective experience. The maps provided a consistent national source of information on priority conservation areas for rivers and wetlands and have been applied in 25 of the 37 use contexts since their launch just over 3 years ago. When framed as a knowledge co-production process supported by boundary work, regional conservation plans can be developed into valuable boundary objects that offer a tangible tool for multi-agency cooperation around conservation. Our work provides practical guidance for promoting uptake of conservation science and contributes to an evidence base on how conservation efforts can be improved.