Innovative infrastructure to access Brazilian fungal diversity using deep learning.

In the present investigation, we employ a novel and meticulously structured database assembled by experts, encompassing macrofungi field-collected in Brazil, featuring upwards of 13,894 photographs representing 505 distinct species. The purpose of utilizing this database is twofold: firstly, to furnish training and validation for convolutional neural networks (CNNs) with the capacity for autonomous identification of macrofungal species; secondly, to develop a sophisticated mobile application replete with an advanced user interface. This interface is specifically crafted to acquire images, and, utilizing the image recognition capabilities afforded by the trained CNN, proffer potential identifications for the macrofungal species depicted therein. Such technological advancements democratize access to the Brazilian Funga, thereby enhancing public engagement and knowledge dissemination, and also facilitating contributions from the populace to the expanding body of knowledge concerning the conservation of macrofungal species of Brazil.

A New Texture Spectrum Based on Parallel Encoded Texture Unit and Its Application on Image Classification: A Potential Prospect for Vision Sensing.

In industrial applications based on texture classification, efficient and fast classifiers are extremely useful for quality control of industrial processes. The classifier of texture images has to satisfy two requirements: It must be efficient and fast. In this work, a texture unit is coded in parallel, and using observation windows larger than 3×3, a new texture spectrum called Texture Spectrum based on the Parallel Encoded Texture Unit (TS_PETU) is proposed, calculated, and used as a characteristic vector in a multi-class classifier, and then two image databases are classified. The first database contains images from the company Interceramic®® and the images were acquired under controlled conditions, and the second database contains tree stems and the images were acquired in natural environments. Based on our experimental results, the TS_PETU satisfied both requirements (efficiency and speed), was developed for binary images, and had high efficiency, and its compute time could be reduced by applying parallel coding concepts. The classification efficiency increased by using larger observational windows, and this one was selected based on the window size. Since the TS_PETU had high efficiency for Interceramic®® tile classification, we consider that the proposed technique has significant industrial applications.

Hybrid morphological-convolutional neural networks for computer-aided diagnosis.

Training deep Convolutional Neural Networks (CNNs) presents challenges in terms of memory requirements and computational resources, often resulting in issues such as model overfitting and lack of generalization. These challenges can only be mitigated by using an excessive number of training images. However, medical image datasets commonly suffer from data scarcity due to the complexities involved in their acquisition, preparation, and curation. To address this issue, we propose a compact and hybrid machine learning architecture based on the Morphological and Convolutional Neural Network (MCNN), followed by a Random Forest classifier. Unlike deep CNN architectures, the MCNN was specifically designed to achieve effective performance with medical image datasets limited to a few hundred samples. It incorporates various morphological operations into a single layer and uses independent neural networks to extract information from each signal channel. The final classification is obtained by utilizing a Random Forest classifier on the outputs of the last neural network layer. We compare the classification performance of our proposed method with three popular deep CNN architectures (ResNet-18, ShuffleNet-V2, and MobileNet-V2) using two training approaches: full training and transfer learning. The evaluation was conducted on two distinct medical image datasets: the ISIC dataset for melanoma classification and the ORIGA dataset for glaucoma classification. Results demonstrate that the MCNN method exhibits reliable performance in melanoma classification, achieving an AUC of 0.94 (95% CI: 0.91 to 0.97), outperforming the popular CNN architectures. For the glaucoma dataset, the MCNN achieved an AUC of 0.65 (95% CI: 0.53 to 0.74), which was similar to the performance of the popular CNN architectures. This study contributes to the understanding of mathematical morphology in shallow neural networks for medical image classification and highlights the potential of hybrid architectures in effectively learning from medical image datasets that are limited by a small number of case samples.

Deep learning for Chilean native flora classification: a comparative analysis.

The limited availability of information on Chilean native flora has resulted in a lack of knowledge among the general public, and the classification of these plants poses challenges without extensive expertise. This study evaluates the performance of several Deep Learning (DL) models, namely InceptionV3, VGG19, ResNet152, and MobileNetV2, in classifying images representing Chilean native flora. The models are pre-trained on Imagenet. A dataset containing 500 images for each of the 10 classes of native flowers in Chile was curated, resulting in a total of 5000 images. The DL models were applied to this dataset, and their performance was compared based on accuracy and other relevant metrics. The findings highlight the potential of DL models to accurately classify images of Chilean native flora. The results contribute to enhancing the understanding of these plant species and fostering awareness among the general public. Further improvements and applications of DL in ecology and biodiversity research are discussed.

Mapping Malaria Vector Habitats in West Africa: Drone Imagery and Deep Learning Analysis for Targeted Vector Surveillance.

Disease control programs are needed to identify the breeding sites of mosquitoes, which transmit malaria and other diseases, in order to target interventions and identify environmental risk factors. The increasing availability of very-high-resolution drone data provides new opportunities to find and characterize these vector breeding sites. Within this study, drone images from two malaria-endemic regions in Burkina Faso and Côte d'Ivoire were assembled and labeled using open-source tools. We developed and applied a workflow using region-of-interest-based and deep learning methods to identify land cover types associated with vector breeding sites from very-high-resolution natural color imagery. Analysis methods were assessed using cross-validation and achieved maximum Dice coefficients of 0.68 and 0.75 for vegetated and non-vegetated water bodies, respectively. This classifier consistently identified the presence of other land cover types associated with the breeding sites, obtaining Dice coefficients of 0.88 for tillage and crops, 0.87 for buildings and 0.71 for roads. This study establishes a framework for developing deep learning approaches to identify vector breeding sites and highlights the need to evaluate how results will be used by control programs.

Image dataset of urine test results on petri dishes for deep learning classification.

Recent advancements in image analysis and interpretation technologies using computer vision techniques have shown potential for novel applications in clinical microbiology laboratories to support task automation aiming for faster and more reliable diagnostics. Deep learning models can be a valuable tool in the screening process, helping technicians spend less time classifying no-growth results and quickly separating the categories of tests that deserve further analysis. In this context, creating datasets with correctly classified images is fundamental for developing and improving such models. Therefore, a dataset of urine test Petri dishes images was collected following a standardized process, with controlled conditions of positioning and lighting. Image acquisition was conducted by applying a hardware chamber equipped with a led lightning source and a smartphone camera with 12 MP resolution. A software application was developed to support image classification and handling. Experienced microbiologists classified the images according to the positive, negative, and uncertain test results. The resulting dataset contains a total of 1500 images and can support the development of deep learning algorithms to classify urine exams according to their microbial growth.

Tuning of data augmentation hyperparameters in deep learning to building construction image classification with small datasets.

Deep Learning methods have important applications in the building construction image classification field. One challenge of this application is Convolutional Neural Networks adoption in a small datasets. This paper proposes a rigorous methodology for tuning of Data Augmentation hyperparameters in Deep Learning to building construction image classification, especially to vegetation recognition in facades and roofs structure analysis. In order to do that, Logistic Regression models were used to analyze the performance of Convolutional Neural Networks trained from 128 combinations of transformations in the images. Experiments were carried out with three architectures of Deep Learning from the literature using the Keras library. The results show that the recommended configuration (Height Shift Range = 0.2; Width Shift Range = 0.2; Zoom Range =0.2) reached an accuracy of 95.6 % in the test step of first case study. In addition, the hyperparameters recommended by proposed method also achieved the best test results for second case study: 93.3 % .

Classification of Skin Lesion through Active Learning Strategies.

BACKGROUND AND OBJECTIVE: According to the National Cancer Institute, among all malignant tumors, non-melanoma skin cancer, and melanoma are the most frequent in Brazil. Despite having a lower incidence, the melanoma type has accelerated growth and greater lethality. Several studies have been performed in recent years in the computer vision area to assist in the early diagnosis of skin cancer. Despite being widely used and presenting good results, deep learning approaches require a large amount of annotated data and considerable computational cost for training the model. Therefore, the present work explores active learning approaches to select a small set of more informative data for training the classifier. For that, different selection criteria are considered to obtain more effective and efficient classifiers for skin lesions. METHODS: We perform an extensive experimental evaluation considering three datasets and different learning strategies and scenarios for validation. In addition to data augmentation, we evaluated two segmentation strategies considering the U-net CNN model and the Fully Convolutional Networks (FCN) with a manual expert review. We also analyzed the best (handcrafted and deep) features that describe each skin lesion and the most suitable classifiers and combinations (extractor-classifier) for this context. The active learning approach evaluated different criteria based on uncertainty, diversity, and representativeness to select the most informative samples. The strategies used were Decreasing Boundary Edges, Entropy, Least Confidence, Margin Sampling, Minimum-Spanning Tree Boundary Edges, and Root-Distance based Sampling. RESULTS: It can be observed that the segmentation with FCN and manual correction by the specialist, the Border-Interior Classification (BIC) extractor, and the Random Forest (RF) classifier showed a better performance. Regarding the active learning approach, the Margin Sampling strategy presented the best classification accuracies (about 93%) with only 35% of the training set compared to the traditional learning approach (which requires the entire set). CONCLUSIONS: According to the results, it is possible to observe that the selection strategies allow for achieving high accuracies faster (fewer learning iterations) and with a smaller amount of labeled samples compared to the traditional learning approach. Hence, active learning can contribute significantly to the diagnosis of skin lesions, beneficially reducing specialists' annotation costs.

Dataset of manually classified images obtained from a construction site.

A manually classified dataset of images obtained by four static cameras located around a construction site is presented. Eight object classes, typically found in a construction environment, were considered. The dataset consists of 1046 images selected from video footage by a frame extraction algorithm and txt files containing the objects' class and coordinates information. These data can be used to develop computer vision techniques in the engineering and construction fields.

Clasificación de Imágenes de Neumonía a causa de Covid-19 utilizando Transfer-Learning basado en Redes Convolucionales / Classification of Images of Pneumonia Due to Covid-19 Using TransferLearning, Based on Convolutional Networks

La Inteligencia Artificial ha ayudado a lidiar diferentes problemas relacionados con los datos masivos y a su vez con su tratamiento, diagnóstico y detección de enfermedades como la que actualmente nos preocupa, la Covid-19. El objetivo de esta investigación ha sido analizar y desarrollar la clasificación de imágenes de neumonía a causa de covid-19 para un diagnostico efectivo y óptimo. Se ha usado Transfer-Learning aplicando ResNet, DenseNet, Poling y Dense layer para la elaboración de los modelos de red propios Covid-UPeU y Covid-UPeU-TL, utilizando las plataformas Kaggle y Google colab, donde se realizaron 4 experimentos. El resultado con una mejor clasificación de imágenes se obtuvo en el experimento 4 prueba N°2 con el modelo Covid-UPeU-TL donde Acc.Train: 0.9664 y Acc.Test: 0.9851. Los modelos implementados han sido desarrollados con el propósito de tener una visión holística de los factores para la optimización en la clasificación de imágenes de neumonía a causa de COVID-19(AU)

Artificial Intelligence has helped to deal with different problems related to massive data in turn to the treatment, diagnosis and detection of diseases such as the one that currently has us in concern, Covid-19. The objective of this research has been to analyze and develop the classification of images of pneumonia due to covid-19 for an effective and optimal diagnosis. Transfer-Learning has been used applying ResNet, DenseNet, Poling and Dense layer for the elaboration of the own network models Covid-Upeu and Covid-UpeU-TL, using Kaggle and Google colab platforms, where 4 experiments have been carried out. The result with a better classification of images was obtained in experiment 4 test N ° 2 with the Covid-UPeU-TL model where Acc.Train: 0.9664 and Acc.Test: 0.9851. The implemented models have been developed with the purpose of having a holistic view of the factors for optimization in the classification of COVID-19 images(AU)

Brain Hemorrhage Classification in CT Scan Images Using Minimalist Machine Learning.

Over time, a myriad of applications have been generated for pattern classification algorithms. Several case studies include parametric classifiers such as the Multi-Layer Perceptron (MLP) classifier, which is one of the most widely used today. Others use non-parametric classifiers, Support Vector Machine (SVM), K-Nearest Neighbors (K-NN), Naïve Bayes (NB), Adaboost, and Random Forest (RF). However, there is still little work directed toward a new trend in Artificial Intelligence (AI), which is known as eXplainable Artificial Intelligence (X-AI). This new trend seeks to make Machine Learning (ML) algorithms increasingly simple and easy to understand for users. Therefore, following this new wave of knowledge, in this work, the authors develop a new pattern classification methodology, based on the implementation of the novel Minimalist Machine Learning (MML) paradigm and a higher relevance attribute selection algorithm, which we call dMeans. We examine and compare the performance of this methodology with MLP, NB, KNN, SVM, Adaboost, and RF classifiers to perform the task of classification of Computed Tomography (CT) brain images. These grayscale images have an area of 128 × 128 pixels, and there are two classes available in the dataset: CT without Hemorrhage and CT with Intra-Ventricular Hemorrhage (IVH), which were classified using the Leave-One-Out Cross-Validation method. Most of the models tested by Leave-One-Out Cross-Validation performed between 50% and 75% accuracy, while sensitivity and sensitivity ranged between 58% and 86%. The experiments performed using our methodology matched the best classifier observed with 86.50% accuracy, and they outperformed all state-of-the-art algorithms in specificity with 91.60%. This performance is achieved hand in hand with simple and practical methods, which go hand in hand with this trend of generating easily explainable algorithms.

Explainable Artificial Intelligence for Bias Detection in COVID CT-Scan Classifiers.

PROBLEM: An application of Explainable Artificial Intelligence Methods for COVID CT-Scan classifiers is presented. MOTIVATION: It is possible that classifiers are using spurious artifacts in dataset images to achieve high performances, and such explainable techniques can help identify this issue. AIM: For this purpose, several approaches were used in tandem, in order to create a complete overview of the classificatios. METHODOLOGY: The techniques used included GradCAM, LIME, RISE, Squaregrid, and direct Gradient approaches (Vanilla, Smooth, Integrated). MAIN RESULTS: Among the deep neural networks architectures evaluated for this image classification task, VGG16 was shown to be most affected by biases towards spurious artifacts, while DenseNet was notably more robust against them. Further impacts: Results further show that small differences in validation accuracies can cause drastic changes in explanation heatmaps for DenseNet architectures, indicating that small changes in validation accuracy may have large impacts on the biases learned by the networks. Notably, it is important to notice that the strong performance metrics achieved by all these networks (Accuracy, F1 score, AUC all in the 80 to 90% range) could give users the erroneous impression that there is no bias. However, the analysis of the explanation heatmaps highlights the bias.

A new approach for classifying coronavirus COVID-19 based on its manifestation on chest X-rays using texture features and neural networks.

Since the recent challenge that humanity is facing against COVID-19, several initiatives have been put forward with the goal of creating measures to help control the spread of the pandemic. In this paper we present a series of experiments using supervised learning models in order to perform an accurate classification on datasets consisting of medical images from COVID-19 patients and medical images of several other related diseases affecting the lungs. This work represents an initial experimentation using image texture feature descriptors, feed-forward and convolutional neural networks on newly created databases with COVID-19 images. The goal was setting a baseline for the future development of a system capable of automatically detecting the COVID-19 disease based on its manifestation on chest X-rays and computerized tomography images of the lungs.

Alzheimer's Disease Detection Through Whole-Brain 3D-CNN MRI.

The projected burden of dementia by Alzheimer's disease (AD) represents a looming healthcare crisis as the population of most countries grows older. Although there is currently no cure, it is possible to treat symptoms of dementia. Early diagnosis is paramount to the development and success of interventions, and neuroimaging represents one of the most promising areas for early detection of AD. We aimed to deploy advanced deep learning methods to determine whether they can extract useful AD biomarkers from structural magnetic resonance imaging (sMRI) and classify brain images into AD, mild cognitive impairment (MCI), and cognitively normal (CN) groups. We tailored and trained Convolutional Neural Networks (CNNs) on sMRIs of the brain from datasets available in online databases. Our proposed method, ADNet, was evaluated on the CADDementia challenge and outperformed several approaches in the prior art. The method's configuration with machine-learning domain adaptation, ADNet-DA, reached 52.3% accuracy. Contributions of our study include devising a deep learning system that is entirely automatic and comparatively fast, presenting competitive results without using any patient's domain-specific knowledge about the disease. We were able to implement an end-to-end CNN system to classify subjects into AD, MCI, or CN groups, reflecting the identification of distinctive elements in brain images. In this context, our system represents a promising tool in finding biomarkers to help with the diagnosis of AD and, eventually, many other diseases.

Characterization of Pulmonary Nodules Based on Features of Margin Sharpness and Texture.

Lung cancer is the leading cause of cancer-related deaths in the world, and one of its manifestations occurs with the appearance of pulmonary nodules. The classification of pulmonary nodules may be a complex task to specialists due to temporal, subjective, and qualitative aspects. Therefore, it is important to integrate computational tools to the early pulmonary nodule classification process, since they have the potential to characterize objectively and quantitatively the lesions. In this context, the goal of this work is to perform the classification of pulmonary nodules based on image features of texture and margin sharpness. Computed tomography scans were obtained from a publicly available image database. Texture attributes were extracted from a co-occurrence matrix obtained from the nodule volume. Margin sharpness attributes were extracted from perpendicular lines drawn over the borders on all nodule slices. Feature selection was performed by different algorithms. Classification was performed by several machine learning classifiers and assessed by the area under the receiver operating characteristic curve, sensitivity, specificity, and accuracy. Highest classification performance was obtained by a random forest algorithm with all 48 extracted features. However, a decision tree using only two selected features obtained statistically equivalent performance on sensitivity and specificity.

Novel Image Classification technique using Particle Filter Framework optimised by Multikernel Sparse Representation

ABSTRACT The robustness and speed of image classification is still a challenging task in satellite image processing. This paper introduces a novel image classification technique that uses the particle filter framework (PFF)-based optimisation technique for satellite image classification. The framework uses a template-matching algorithm, comprising fast marching algorithm (FMA) and level set method (LSM)-based segmentation which assists in creating the initial templates for comparison with other test images. The created templates are trained and used as inputs for the optimisation. The optimisation technique used in this proposed work is multikernel sparse representation (MKSR). The combined execution of FMA, LSM, PFF and MKSR approaches has resulted in a substantial reduction in processing time for various classes in a satellite image which is small when compared with Support Vector Machine (SVM) and Independent Component Discrimination Analysis (ICDA)based image classifications obtained for comparison purposes. This study aims to improve the robustness of image classification based on overall accuracy (OA) and kappa coefficient. The variation of OA with this technique, between different classes of a satellite image, is only10%, whereas that with the SVM and ICDA techniques is more than 50%.

Árvore de decisão e a densidade mínima de amostras no mapeamento da cobertura da terra / Decision tree and minimum sample density in land cover mapping

A cobertura da terra é uma informação espacial de extrema relevância para uma série de modelos, sendo utilizada para estimar a produção de sedimentos e para mensurar a potencialidade da paisagem em sequestrar carbono. A classificação da cobertura da terra pelo método de classificação supervisionado necessita de áreas de treino, já que essas áreas devem ser representativas para cada classe de cobertura da terra. Para o algoritmo de classificação por árvore de decisão (AD), a complexidade da AD resulta em diferentes valores de acurácias para os mapas temáticos. Desse modo, o objetivo deste estudo foi determinar a densidade mínima de amostras em um modelo por AD, a fim de discriminar as classes de cobertura da terra e avaliar o tamanho da AD gerada quanto ao seu número de folhas. Além disso, preocupou-se em identificar as classes da cobertura da terra de mais difícil classificação. Nesse contexto, foram utilizadas bandas da imagem do satélite RESOURCESAT-1 e índices espectrais. A densidade mínima de amostras variou entre 0,15 e 0,30% da área total para cada classe. Esse intervalo de amostragem possibilitou resultados melhores que 80% para o índice kappa. O menor agrupamento entre observações em uma mesma folha terminal foi de 45, e as classes mais difíceis de classificar foram floresta e lavoura de arroz, devido à semelhança espectral que as florestas sombreadas possuem com as lavouras de arroz irrigadas.

Land cover is a spatial information of great relevance for a variety of models for estimating sediment yield and to measure the potential of the landscape carbon sequestration. The classification of land cover by the supervised method requires training areas, these areas must be representative of each class of land cover. For the classification decision tree (DT) algorithm, the complexity of DT, results in different values of accuracies for thematic maps. Thus, the objective of this study was to estimate the minimum sample density in a DT model which would allow to discriminate land cover classes, evaluate the size of the generated DT model, as well as, identify the more difficult land cover class to be mapped. Satellite images from RESOURCESAT-1as well as spectral indices were used in the study. The minimum sample density varied between 0.15 and 0.30% of the total area for each class, this sampling interval allowed better results than 80% for kappa index. The smallest grouping of observations in the same terminal leaf was 45 observations. In this study the most difficult land use classes to be mapped were forest and rice crops due to spectral similarity of shaded forests with irrigated rice crops.

Árvore de decisão e a densidade mínima de amostras no mapeamento da cobertura da terra / Decision tree and minimum sample density in land cover mapping

A cobertura da terra é uma informação espacial de extrema relevância para uma série de modelos, sendo utilizada para estimar a produção de sedimentos e para mensurar a potencialidade da paisagem em sequestrar carbono. A classificação da cobertura da terra pelo método de classificação supervisionado necessita de áreas de treino, já que essas áreas devem ser representativas para cada classe de cobertura da terra. Para o algoritmo de classificação por árvore de decisão (AD), a complexidade da AD resulta em diferentes valores de acurácias para os mapas temáticos. Desse modo, o objetivo deste estudo foi determinar a densidade mínima de amostras em um modelo por AD, a fim de discriminar as classes de cobertura da terra e avaliar o tamanho da AD gerada quanto ao seu número de folhas. Além disso, preocupou-se em identificar as classes da cobertura da terra de mais difícil classificação. Nesse contexto, foram utilizadas bandas da imagem do satélite RESOURCESAT-1 e índices espectrais. A densidade mínima de amostras variou entre 0,15 e 0,30% da área total para cada classe. Esse intervalo de amostragem possibilitou resultados melhores que 80% para o índice kappa. O menor agrupamento entre observações em uma mesma folha terminal foi de 45, e as classes mais difíceis de classificar foram floresta e lavoura de arroz, devido à semelhança espectral que as florestas sombreadas possuem com as lavouras de arroz irrigadas.(AU)

Land cover is a spatial information of great relevance for a variety of models for estimating sediment yield and to measure the potential of the landscape carbon sequestration. The classification of land cover by the supervised method requires training areas, these areas must be representative of each class of land cover. For the classification decision tree (DT) algorithm, the complexity of DT, results in different values of accuracies for thematic maps. Thus, the objective of this study was to estimate the minimum sample density in a DT model which would allow to discriminate land cover classes, evaluate the size of the generated DT model, as well as, identify the more difficult land cover class to be mapped. Satellite images from RESOURCESAT-1as well as spectral indices were used in the study. The minimum sample density varied between 0.15 and 0.30% of the total area for each class, this sampling interval allowed better results than 80% for kappa index. The smallest grouping of observations in the same terminal leaf was 45 observations. In this study the most difficult land use classes to be mapped were forest and rice crops due to spectral similarity of shaded forests with irrigated rice crops.(AU)