The Enterics for Global Health (EFGH) Shigella Surveillance Study in Peru.

Background: The Enterics for Global Health (EFGH) Peru site will enroll subjects in a periurban area of the low Amazon rainforest. The political department of Loreto lags behind most of Peru in access to improved sources of water and sanitation, per capita income, children born <2.5 kg, and infant and child mortality. Chronic undernutrition as manifested by linear growth shortfalls is common, but wasting and acute malnutrition are not. Methods: The recruitment of children seeking care for acute diarrheal disease takes place at a geographic cluster of government-based primary care centers in an area where most residents are beneficiaries of free primary healthcare. Results: Rates of diarrheal disease, dysentery, and Shigella are known to be high in the region, with some of the highest rates of disease documented in the literature and little evidence in improvement over the last 2 decades. This study will update estimates of shigellosis by measuring the prevalence of Shigella by polymerase chain reaction and culture in children seeking care and deriving population-based estimates by measuring healthcare seeking at the community level. Conclusions: Immunization has been offered universally against rotavirus in the region since 2009, and in a context where adequate water and sanitation are unlikely to obtain high standards in the near future, control of principal enteropathogens through immunization may be the most feasible way to decrease the high burden of disease in the area in the near future.

Etiology of acute febrile illness in the peruvian amazon as determined by modular formatted quantitative PCR: a protocol for RIVERA, a health facility-based case-control study.

BACKGROUND: The study of the etiology of acute febrile illness (AFI) has historically been designed as a prevalence of pathogens detected from a case series. This strategy has an inherent unrealistic assumption that all pathogen detection allows for causal attribution, despite known asymptomatic carriage of the principal causes of acute febrile illness in most low- and middle-income countries (LMICs). We designed a semi-quantitative PCR in a modular format to detect bloodborne agents of acute febrile illness that encompassed common etiologies of AFI in the region, etiologies of recent epidemics, etiologies that require an immediate public health response and additional pathogens of unknown endemicity. We then designed a study that would delineate background levels of transmission in the community in the absence of symptoms to provide corrected estimates of attribution for the principal determinants of AFI. METHODS: A case-control study of acute febrile illness in patients ten years or older seeking health care in Iquitos, Loreto, Peru, was planned. Upon enrollment, we will obtain blood, saliva, and mid-turbinate nasal swabs at enrollment with a follow-up visit on day 21-28 following enrollment to attain vital status and convalescent saliva and blood samples, as well as a questionnaire including clinical, socio-demographic, occupational, travel, and animal contact information for each participant. Whole blood samples are to be simultaneously tested for 32 pathogens using TaqMan array cards. Mid-turbinate samples will be tested for SARS-CoV-2, Influenza A and Influenza B. Conditional logistic regression models will be fitted treating case/control status as the outcome and with pathogen-specific sample positivity as predictors to attain estimates of attributable pathogen fractions for AFI. DISCUSSION: The modular PCR platforms will allow for reporting of all primary results of respiratory samples within 72 h and blood samples within one week, allowing for results to influence local medical practice and enable timely public health responses. The inclusion of controls will allow for a more accurate estimate of the importance of specific prevalent pathogens as a cause of acute illness. STUDY REGISTRATION: Project 1791, Registro de Proyectos de Investigación en Salud Pública (PRISA), Instituto Nacional de Salud, Perú.

Microplastic occurrence in fish species from the Iquitos region in Peru, western Amazonia / Ocurrencia de microplástico en especies de peces de la región de Iquitos, Amazonía occidental

The contamination of aquatic environments by microplastic has become a major threat to biodiversity. The presence of microplastic is documented in the aquatic fauna of the oceans, but, in the Amazon basin, reports on microplastic occurrence are few. The present study surveyed microplastic occurrence in fishes in an area of the Peruvian Amazon. We sampled 61 specimens of 15 commercial species from local markets in the city of Iquitos, Loreto Department. We detected a total of 2337 microplastic particles, 1096 in the gills and 1241 in the internal organs (esophagus, stomach, intestine, liver, gonads, pancreas, swim bladder and heart). The prevalence of microplastic particles was 100% and the overall average abundance was of 38.3 particles per individual (17.9 particles per individual in gills and 20.3 particles per individual in internal organs). Most particles were found in carnivorous fish. There was no correlation of particle abundance with fish standard length and weight. These results provided evidence of the degree of microplastic contamination of the fish fauna in the region of Iquitos.(AU)

La contaminación de ambientes acuáticos por microplásticos se ha convertido en una gran amenaza para la biodiversidad. La presencia de microplásticos está bien documentada en la fauna acuática de los océanos, pero en la cuenca del Amazonas hay pocos reportes de ocurrencia. En este trabajo se investigó la ocurrencia de partículas de microplásticos en peces de un área de la Amazonía peruana. Se obtuvieron 61 especímenes de 15 especies comerciales provenientes de los mercados locales de la ciudad de Iquitos. Se detectó un total de 2337 partículas de microplástico, 1096 en las branquias y 1241 en los órganos internos (esófago, estomago, intestinos, hígado, gónadas, páncreas, vejiga natatoria y corazón). La prevalencia de partículas de microplástico fue del 100% y la abundancia general de partículas de microplástico fue de 38.3 partículas por individuo (17.9 partículas por individuo en las branquias y 20.3 partículas por individuo en los órganos internos). La mayor cantidad de particulas fué encontrada en peces carnivoros. No hubo correlación entre la abundancia de las particulas y el tamaño estandar y peso de los peces. Estos resultados proporcionan evidencia de los niveles de contaminación por microplásticos en la fauna de peces amazónica en la región de Iquitos.(AU)

Redescription and phylogenetics of emAllobates/em emtrilineatus/em (Boulenger 1884 "1883") (Anura: Aromobatidae) based on topotypic specimens.

Allobates trilineatus is the second most geographically widespread species in the genus Allobates, its range extending from northern Ecuador to southern Peru along the Andean foothills of Amazonia and to the east, into Acre, Brazil. However, detailed phenotypic and genetic variation from topotypic specimens is lacking, raising doubts about the identification of specimens in the literature. To solve this problem, we collected 16 topotypic specimens-including male and female adults and juveniles-and associated data such as advertisement calls and tissue samples. Based upon this material, we redescribe the phenotypic variation within A. trilineatus and evaluate its phylogenetic position using a fragment of the mitochondrial gene 16S rDNA. Allobates trilineatus is distinguished from its congeners by its small body size (adult snout-to-vent-length = 14.6-16.6 mm), preserved males with dark gray throat, and gray chest and belly, pale dorsolateral stripe straight and conspicuous, and advertisement call formed by the emission of groups of note-pairs with dominant frequency at 5.06-5.81 kHz. Our phylogenetic results indicate that none of the specimens assigned to this species in previous phylogenetic studies cluster within the clade formed by topotypic samples, except for the sample of one tadpole. Furthermore, our comparison of published phenotypic and genetic data assigned to A. trilineatus with our new data led us to conclude that A. trilineatus as previously recognized was actually a complex of cryptic, closely related species. Although with the data at hand we cannot fully resolve the taxonomy of all sampled populations in previous studies, we provide a new definition and delimitation of A. trilineatus sensu stricto, assign other specimens to different evolutionary units corresponding to candidate species, and flag other important taxonomic issues.

The advertisement call of Chiasmocleis (Syncope) carvalhoi (Nelson, 1975) (Anura: Microhylidae), with taxonomic remarks based on new morphological observations of specimens from Peruvian Amazonia.

We quantitatively describe for the first time the advertisement call of Chiasmocleis (Syncope) carvalhoi using recordings  of five specimens from northern Peruvian Amazonia. The advertisement call is characterized by a single, short, tonal, and high-pitched note. Call duration ranges between 0.03-0.06 s and its dominant frequency between 7.12-7.92 kHz. The lack of pulses within notes distinguishes C. (Syncope) carvalhoi from all congeneric species except C. (Syncope) antenori, C. (Syncope) parkeri and C. (Chiasmocleis) mantiqueira, which can be distinguished by the shorter duration of their notes and silent intervals (in C. (Syncope) antenori and C. (Syncope) parkeri) and by the lower dominant frequency (in C. (Syncope) parkeri and C. (Chiasmocleis) mantiqueira). In addition, based on our collected specimens, we report on and discuss about the variation of some external morphological characters and natural history of C. (Syncope) carvalhoi, including the absence of vocal slits and sacs. Our study reveals a potential association between the absence of vocal slits and sacs, and tonal calls in Chiasmocleis, as well as conflicting morphological diagnostics characters in the literature.

Primer registro documentado del Zorzal de Dorso Rojizo, Catharus fuscescens (Aves : Turdidae) para Loreto, Perú / First documented record of the Reddish back thrush, Catharus fuscescens (Aves : Turdidae) in Loreto, Peru

Resumen El 5 de octubre del 2019 se capturó un individuo de Catharus fuscescens, como parte de los muestreos mensuales del proyecto Monitoreo de las poblaciones de avifauna en el departamento de Loreto - Perú realizado por el Observatorio de Aves Loreto - LBO en la comunidad de San Rafael, distrito de Indiana, departamento de Loreto. Esta captura representa el primer registro documentado de C. fuscescens para el departamento de Loreto, confirmando la condición sugerida de migrante raro en el extremo noreste del Perú en su paso hacia el sur durante su migración hacia Sudamérica.

Abstract On October 5, 2019, an individual from Catharus fuscescens was captured, as part of the monthly sampling of the project Monitoring of birdlife populations in the department of Loreto - Peru conducted by the Loreto Bird Observatory - LBO in the San Rafael community, Indiana district, department of Loreto. This capture represents the first documentation of C. fuscescens for the department of Loreto, confirming the suggested condition of a rare migrant in the northeastern end of Peru as it moves south as its migration season to South America.

Plant therapy in the Peruvian Amazon (Loreto) in case of infectious diseases and its antimicrobial evaluation.

ETHNOPHARMACOLOGICAL RELEVANCE: The plant species reported here are used in contemporary phytotherapies by native and neo-urban societies from the Iquitenian surroundings (district of Loreto, Peruvian Amazon) for ailments related to microbial infections. Inhabitants of various ethnic origins were interviewed and 81 selected extracts were evaluated for their antimicrobial properties against a panel of 36 sensitive and multi-resistant bacteria or yeast. Medicinal plant researches in the Peruvian Amazon are now significant, but none of them has focused on an exhaustive listing of identified species tested on so many microbes with standardized experiments (to obtain MIC value). AIM OF THE STUDY: The aim of the study was to inventory the plants used against infections in the Loreto, an Amazonian region of Peru. It led to the new identification of secondary metabolites in two plant species. MATERIALS AND METHODS: Ethnographic survey was carried out using "participant-observation" methodology and focus on bioprospecting of antimicrobial remedies. Selected plant extracts and antimicrobial drugs were tested in vitro with agar dilution method on 35 bacteria strains and 1 yeast to evaluate their Minimal Inhibitory Concentration (MIC). Microdilution methods using 96-well microtiter plates were used for the determination of MIC from isolated compounds, and cytotoxicity in HepG2 cells from some selected extracts were also evaluated. Activity-guided isolation and identification of compounds were performed by various chromatographic methods and structural elucidations were established using HRMS and NMR spectroscopy. RESULTS: This study outlined antimicrobial activities of 59 plant species from 33 families (72 single plant extracts and 2 fermented preparations), 7 mixtures, and one insect nest extract against 36 microorganisms. Of the 59 species analysed, 12 plants showed relevant antibacterial activity with MIC ≤0.15 mg/mL for one or several of the 36 micro-organisms (Aspidosperma excelsum, Brosimum acutifolium, Copaifera paupera, Erythrina amazonica, Hura crepitans, Myrciaria dubia, Ocotea aciphylla, Persea americana, Spondias mombin, Swartzia polyphylla, Virola pavonis, Vismia macrophylla). Examination by bioautography of E. amazonica, M. dubia and O. aciphylla extracts allowed the phytochemical characterization of antimicrobial fractions and compounds. CONCLUSION: This study suggested an a posteriori correlation of the plant extract antimicrobial activity with the chemosensory cues of the drugs and attested that those chemosensory cues may be correlated with the presence of antimicrobial compounds (alkaloids, tannins, saponosids, essential oil, oleoresin …). It also led to the first isolation and identification of three secondary metabolites from E. amazonica and M. dubia.

A multi-elemental approach to assess potential contamination in tourist beaches: The case of Loreto Bay (Marine Protected Area), NW Mexico.

Metal/metalloid concentrations in water sediment and commercial fishes of Loreto Maritime National Park (MNP), Baja California Sur, Mexico were determined for a comprehensive geochemical study. In-situ physical characteristics (pH, conductivity, redox potential, dissolved oxygen, turbidity) of water clearly indicated the unique oceanographic properties of the Gulf of California. Likewise, the distribution pattern of metals/metalloid in water, sediments and fishes denoted the influences of local geology, longshore currents, upwelling process, natural hydrothermal vents and the 100-year old mining activities of Santa Rosalia region, situated to the north of Loreto. Calculated carcinogenic indices in commercial fish species showed safe human consumption. Thus, the present research validates a comprehensive geochemical study of protected areas upholding the need for continuous monitoring for a better conservation of coastal ecosystems.

Dominant tree species drive beta diversity patterns in western Amazonia.

The forests of western Amazonia are among the most diverse tree communities on Earth, yet this exceptional diversity is distributed highly unevenly within and among communities. In particular, a small number of dominant species account for the majority of individuals, whereas the large majority of species are locally and regionally extremely scarce. By definition, dominant species contribute little to local species richness (alpha diversity), yet the importance of dominant species in structuring patterns of spatial floristic turnover (beta diversity) has not been investigated. Here, using a network of 207 forest inventory plots, we explore the role of dominant species in determining regional patterns of beta diversity (community-level floristic turnover and distance-decay relationships) across a range of habitat types in northern lowland Peru. Of the 2,031 recorded species in our data set, only 99 of them accounted for 50% of individuals. Using these 99 species, it was possible to reconstruct the overall features of regional beta diversity patterns, including the location and dispersion of habitat types in multivariate space, and distance-decay relationships. In fact, our analysis demonstrated that regional patterns of beta diversity were better maintained by the 99 dominant species than by the 1,932 others, whether quantified using species-abundance data or species presence-absence data. Our results reveal that dominant species are normally common only in a single forest type. Therefore, dominant species play a key role in structuring western Amazonian tree communities, which in turn has important implications, both practically for designing effective protected areas, and more generally for understanding the determinants of beta diversity patterns.

Primer registro documentado del Gorrión de Collar Rufo Zonotrichia capensis (Aves: Emberizidae) en la Amazonía Peruana / First documented record for the Rufous Collared Sparrow Zonotrichia capensis (Aves: Emberizidae) in the Peruvian Amazon

Reportamos la presencia del Gorrión de Collar Rufo Zonotrichia capensis por primera vez en los departamen- tos de Loreto y San Martín a 155 y 240 m de altitud respectivamente, la cual corresponde al primer registro confirmado de la especie para la Amazonía peruana. Es posible que la presencia de la especie se deba a la existencia de la carretera que comunica Tarapoto con Yurimaguas, lo que facilitaría la ocupación de la especie por la modificación del paisaje

We report the presence of the Rufous Collared Sparrow Zonotrichia capensis for the first time in the depart- ments of Loreto and San Martín at 155 and 240 m altitude respectively, which corresponds to the first confirmed record of the species for the Peruvian Amazon. It is possible that the presence of the species is due to the existence of the Tarapoto - Yurimaguas road, which would facilitate the occupation of the species by landscape transformation

Segundo registro de Cyttarops alecto y Eumops wilsoni (Mammalia: Chiroptera) en el Perú / Second record of Cyttarops alecto and Eumops wilsoni (Mammalia: Chiroptera) in Peru

Herein we report the second record in Peru of Cyttarops alecto (Emballonuridae) and Eumops wilsoni (Molossidae), both little known bats of Neotropical region. Reports are based on specimens collected in Lambayeque and Loreto Departments, and their geographical distribution are extended in Peru

Aquí se reporta un segundo registro de los murciélagos Eumops wilsoni (Molossidae) y Cyttarops alecto (Emballonuridae) especies poco conocidas de la región Neotropical. Los especímenes fueron recolectados en los departamentos de Lambayeque y Loreto, y amplian su distribución en el Perú

Landscape-scale consequences of differential tree mortality from catastrophic wind disturbance in the Amazon.

Wind disturbance can create large forest blowdowns, which greatly reduces live biomass and adds uncertainty to the strength of the Amazon carbon sink. Observational studies from within the central Amazon have quantified blowdown size and estimated total mortality but have not determined which trees are most likely to die from a catastrophic wind disturbance. Also, the impact of spatial dependence upon tree mortality from wind disturbance has seldom been quantified, which is important because wind disturbance often kills clusters of trees due to large treefalls killing surrounding neighbors. We examine (1) the causes of differential mortality between adult trees from a 300-ha blowdown event in the Peruvian region of the northwestern Amazon, (2) how accounting for spatial dependence affects mortality predictions, and (3) how incorporating both differential mortality and spatial dependence affect the landscape level estimation of necromass produced from the blowdown. Standard regression and spatial regression models were used to estimate how stem diameter, wood density, elevation, and a satellite-derived disturbance metric influenced the probability of tree death from the blowdown event. The model parameters regarding tree characteristics, topography, and spatial autocorrelation of the field data were then used to determine the consequences of non-random mortality for landscape production of necromass through a simulation model. Tree mortality was highly non-random within the blowdown, where tree mortality rates were highest for trees that were large, had low wood density, and were located at high elevation. Of the differential mortality models, the non-spatial models overpredicted necromass, whereas the spatial model slightly underpredicted necromass. When parameterized from the same field data, the spatial regression model with differential mortality estimated only 7.5% more dead trees across the entire blowdown than the random mortality model, yet it estimated 51% greater necromass. We suggest that predictions of forest carbon loss from wind disturbance are sensitive to not only the underlying spatial dependence of observations, but also the biological differences between individuals that promote differential levels of mortality.

Rhipha ignea sp. nov. (Lepidoptera: Erebidae: Arctiini), nueva especie del grupo flammans de la Amazonía de Perú / Rhipha ignea sp. nov. (Arctiini: Erebidae: Lepidoptera), new species of the flammans group, from Peruvian Amazonia

Se describe e ilustra la nueva especie Rhipha ignea del departamento de Loreto, Amazonía peruana.

Rhipha ignea, a new species from department Loreto, Peruvian Amazonia, is described and illustrated

Description of Lutzomyia (Trichophoromyia) nautaensis n. sp. (Diptera: Psychodidae) from the Peruvian Amazon Basin.

A new species of sand fly, which we describe as Lutzomyia (Trichophoromyia) nautaensis n. sp., was collected in the northern Peruvian Amazon Basin. In this region of Peru, cutaneous leishmaniasis is transmitted primarily by anthropophilic sand flies; however, zoophilic sand flies of the subgenus Trichophoromyia may also be incriminated in disease transmission. Detection of Leishmania spp. in Lutzomyia auraensis Mangabeira captured in the southern Peruvian Amazon indicates the potential of this and other zoophilic sand flies for human disease transmission, particularly in areas undergoing urban development. Herein, we describe Lutzomyia (Trichophoromyia) nautaensis n. sp., and report new records of sand flies in Peru.

Primer registro de Lophodinium polylophum (Daday) Lemmermann 1910 (Dinophyceae: Lophodiniaceae) en el Perú

Se presenta el primer registro para el Perú de Lophodinium polylophum, dinoflagelado de agua dulce, identificado en muestras de plancton procedentes de la laguna Picoplancha en el Santuario Nacional de Pampas del Heath (Madre de Dios) y de una quebrada en la cuenca del rio Puinahua (Loreto).

Herein, the first record of Lophodinium polylophum from Peru is presented. This fresh water dinoflagellate was identified in plankton samples from the lagoon Picoplancha of Santuario Nacional Pampas del Heath (Madre de Dios) and from a stream in the Puinahua River basin in Loreto.

First record of albinism in the Black mastiff bat Molossus rufus E. Geoffroy, 1805

Herein we document the first case of albinism in Black Mastiff bat Molossus rufus É. Geoffroy St.-Hilaire, 1805. The specimen was collected in Iquitos City (Northwestern Peru); it was an adult male with ventral and dorsal white pelage, red eyes, and depigmented wing membranes, nose leafs and ears.(AU)

First record of albinism in the Black mastiff bat Molossus rufus E. Geoffroy, 1805

Herein we document the first case of albinism in Black Mastiff bat Molossus rufus É. Geoffroy St.-Hilaire, 1805. The specimen was collected in Iquitos City (Northwestern Peru); it was an adult male with ventral and dorsal white pelage, red eyes, and depigmented wing membranes, nose leafs and ears.

Two new species of Dilkea subgenus Dilkea (Passifloraceae) from Loreto, Peru.

Two new species of Dilkea subgenus Dilkea (Passifloraceae) are described from Loreto, Peru. Dilkea hebes Feuillet, sp. nov., has leaves with elliptic to oblanceolate blades that are dull adaxially, and spherical fruits with thick walls; Dilkea nitens Feuillet, sp. nov., has leaves with narrow-ovate blades that are shiny adaxially, and fruits with an apical cone and thin walls. A key to the species of subgenus Dilkea is provided.