Defining the value of medical microbiology consultation.

Medical microbiologists, defined as doctoral-level laboratory directors with subspecialty training in medical microbiology, lead the clinical laboratory operations through activities such as clinical consultations, oversight of diagnostic testing menu, institutional leadership, education, and scholastic activities. However, unlike their clinical colleagues, medical microbiologists are largely unable to bill for clinical consultations performed within the hospital and, therefore, unable to generate relative value units or a similar quantifiable metric. As hospital budgets tighten and justification of staffing becomes a necessity, this may present a challenge to the medical microbiologist attempting to prove their value to the organization. To aid in providing tangible data, the Personnel Standards and Workforce subcommittee of the American Society for Microbiology conducted a multi-center study across seven medical centers to document clinical consultations and their impact. Consults were generated equally from internal (laboratory-based) and external (hospital-based) parties, with the majority directly impacting patient management. Near universal acceptance of the medical microbiologist's recommendation highlights the worth derived from their expertise. External consults required more time commitment from the medical microbiologist than internal consults, although both presented ample opportunity for secondary value, including impact through stewardship, education, clinical guidance, and cost reduction. This study is a description of the content and impact of consultations that underscore the importance of the medical microbiologist as a key member of the healthcare team. IMPORTANCE: Medical microbiologists are invaluable to the clinical microbiology laboratory and the healthcare system as a whole. However, as medical microbiologists do not regularly generate relative value units, capturing and quantifying the value provided is challenging. As hospital budgets tighten, justification of staffing becomes a necessity. To aid in providing tangible data, the Personnel Standards and Workforce subcommittee of the American Society for Microbiology conducted a multi-center study across seven medical centers to document clinical consultations and their impact. To our knowledge, this is the first study to provide detailed evaluation of the consultative value provided by medical microbiologists.

Present and Future Non-Culture-Based Diagnostics: Stewardship Potentials and Considerations.

The medical microbiologist plays a key role in the transition from culture-based to molecular test methods for diagnosis of infectious diseases. They must understand the scientific and technical bases underlying these tests along with their associated benefits and limitations and be able to educate administrators and patient providers on their proper use. Coordination of testing practices between clinical departments and the spectrum of public health and research laboratories is essential to optimize health care delivery.

Unexplored Challenges of Minoritized Microbiologists in Academia.

The scientific community is making significant efforts to be inclusive and to promote diversity and equity. The microbial sciences are not the exception, and organizations, such as the American Society for Microbiology (ASM), are implementing strategic plans to advance these initiatives. However, one unexplored topic is whether the recruitment of minoritized microbiologists should use tailored programs for the success of trainees and faculty. Some challenges and opportunities are presented for consideration while developing recruitment, retention, and advancement programs in the microbial sciences.

Fundamentals and implementation of Microbiological Diagnostic Stewardship Programs. / Fundamentos e implementación de Programas de Optimización de Diagnóstico Microbiológico.

Microbiological diagnostic stewardship programs promote coordinated measures aimed at optimizing the use of diagnostic techniques, thus favouring the adoption of adequate and cost-effective therapeutic, clinical and preventive decisions. The implementation of microbiological diagnostic stewardship relies upon the creation of multidisciplinary committees led by clinical microbiologists for the design of diagnostic algorithms, the adequacy of the laboratory computer system to monitor the relevance of the requested diagnostic tests, the implementation of a quality control system, the design and performance of studies of cost-effectiveness, the training of the petitioner and the technical and nursing staff and the continuous evaluation of the program. The incorporation of microbiological diagnostic stewardship in routine care reports tangible benefits for the patient while strengthening the pivotal role of the clinical microbiologist in the management of infectious diseases.

Active support after natural disasters: a review of a microbiologist's role.

In the aftermath of a natural disaster, multispecialty rapid response teams are deployed to support health-related relief work. Microbiologists are often part of such teams, along with public health specialists, clinicians and entomologists, and can contribute to the response in multiple ways. The role of a microbiologist is critical not only for laboratory diagnosis of infectious diseases, but also for situational analysis and evaluation, planning, prevention and control. The task begins with risk assessment, specifically for identification of diseases epidemic and endemic to the area. Evaluation of existing laboratory setups and establishment of services where none exist is a priority, including facilitation of a tiered laboratory system. Training of laboratory staff at short notice in field settings, biosafety and biomedical waste management are niche areas where microbiologists can contribute. Emerging focus areas include establishment of modular laboratories, infection prevention and control in community evacuation centres and considerations for reopening of healthcare facilities closed due to extensive natural damage. A trained and efficient microbiologist will prove a valuable asset to provide timely and useful support for infectious disease diagnosis, prevention, control and management in the wake of natural disasters.

A nationwide survey on involvement of clinical microbiologists in antibiotic stewardship programmes in large French hospitals.

Antibiotic stewardship programmes (ASP) are essential to tackle antibiotic resistance. Clinical microbiologists (CMs) play a key role in these programmes; however, few studies describe their actual involvement. Our objective was to explore CMs' involvement in French hospital ASP. In 2018, we conducted a survey among CMs working in large public French hospitals (600 acute care beds or more). The questionnaire focused on the following topics: microbiology department's characteristics, hospital ASP, and CMs' involvement in this programme, including their use of rapid diagnostic tests (RDT). Fifty/74 CMs answered (response rate 68%), with 68% working in a teaching hospital. CMs were leading the ASP in 6% of cases, and 57% of hospitals had a multidisciplinary antibiotic stewardship team. Most microbiology departments (92%) were using specific PCR, processed 24/7 in 74% of hospitals. More than half (58%) were using syndromic panel-based testing, 94% mass spectrometry, and 96% immunochromatographic/colorimetric RDT. Blood cultures were processed 24/7 in 44% of hospitals. CMs were involved in this. Finally, 42% of CMs wished to be more involved in their hospital's ASP, the most frequently reported barrier being lack of time (36%). CMs should be more involved in ASP. RDT are widely used, but not implemented in an optimal way.

Antimicrobial Stewardship: How the Microbiology Laboratory Can Right the Ship.

Antimicrobial stewardship is a bundle of integrated interventions employed to optimize the use of antimicrobials in health care settings. While infectious-disease-trained physicians, with clinical pharmacists, are considered the main leaders of antimicrobial stewardship programs, clinical microbiologists can play a key role in these programs. This review is intended to provide a comprehensive discussion of the different components of antimicrobial stewardship in which microbiology laboratories and clinical microbiologists can make significant contributions, including cumulative antimicrobial susceptibility reports, enhanced culture and susceptibility reports, guidance in the preanalytic phase, rapid diagnostic test availability, provider education, and alert and surveillance systems. In reviewing this material, we emphasize how the rapid, and especially the recent, evolution of clinical microbiology has reinforced the importance of clinical microbiologists' collaboration with antimicrobial stewardship programs.

Human resources needed to perform antimicrobial stewardship teams' activities in French hospitals.

OBJECTIVE: In January 2015, the French ministry of Health set up a task force on antibiotic resistance. Members of the task force's "antimicrobial stewardship" group conducted a study to evaluate the human resources needed to implement all the required activities of the multidisciplinary antimicrobial stewardship teams (AST - antibiotic/infectious disease lead supervisors, microbiologists, and pharmacists) in French healthcare facilities. METHODS: We conducted an online cross-sectional nationwide survey. The questionnaire was designed based on regulatory texts and experts' consensus. The survey took place between March and May 2015. We used the mailing list of the French Infectious Diseases Society (SPILF) to send out questionnaires. RESULTS: A total of 65 healthcare facilities completed the questionnaire. The human resources needed to implement all AST's activities were estimated at 3.6 full-time equivalent (FTE) positions/1000 acute care beds for antibiotic/infectious disease lead supervisors, at 2.5 FTE/1000 beds for pharmacists, and at 0.6 FTE/1000 beds for microbiologists. This almost amounts to a total of 2000 FTE positions for all healthcare facilities (public and private) in France and to an annual cost of 200 million euros. CONCLUSION: Dedicated and sustainable funding for AST is urgently needed to implement comprehensive and functional AST programs in all healthcare facilities.

What is a microbiologist? A survey exploring the microbiology workforce.

Microbiology has a long tradition of making inspirational, world-changing discovery. Microbiology now plays essential roles in many disciplines, leading to some microbiologists raising concern over the apparent loss of identity. An electronic survey was undertaken to capture the scientific identity (based on scientific discipline) of people for whom microbiology forms a part of their profession, in addition to information regarding their first degree (title, country and year in which the degree was completed) and the sector in which they currently work. A total of 447 responses were collected, representing 52 countries from which they gained their first degree. Biology was the most common first degree title (of 32 titles provided), while microbiologist was the most common scientific identity (of 26 identities provided). The data collected in this study gives a snapshot of the multidisciplinarity, specialism and evolving nature of the microbiology academic workforce. While the most common scientific identity chosen in this study was that of a microbiologist, it appears that the microbiological workforce is contributed to by a range of different disciplines, highlighting the cross-cutting, multidisciplined and essential role microbiology has within scientific endeavour. Perhaps, we should be less concerned with labels, and celebrate the success with which our discipline has delivered.

Human and animal health on three continents--a biography of the early life of Karl Friedrich Meyer (1884-1974).

Karl Friedrich Meyer (KF) was born and educated as a veterinarian in Europe; he researched infectious diseases in Europe, South Africa and the United States. He is one of the true forefathers of the 'one health-one medicine' concept. The broad scope of his research covered botulism, leptospirosis, brucellosis, plague, ornithosis, Western equine encephalitis, mussel poisoning and clostridia. This manuscript adds some more details of his early biography.

Impact of a clinical microbiology-intensive care consulting program in a cardiothoracic intensive care unit.

A preintervention-postintervention study was carried out over a 4-year period to assess the impact of an antimicrobial stewardship intervention, based on clinical microbiologist ward rounds (clinical microbiology-intensive care partnership [CMICP]), at a cardiothoracic intensive care unit. Comparison of clinical data for 37 patients with diagnosis of bacteremia (18 from preintervention period, 19 from postintervention period) revealed that CMICP implementation resulted in (1) significant increase of appropriate empirical treatments (+34%, P = .029), compliance with guidelines (+28%, P = .019), and number of de-escalations (+42%, P = .032); and (2) decrease (average = 2.5 days) in time to optimization of antimicrobial therapy and levofloxacin (Δ 2009-2012 = -74 defined daily dose [DDD]/1,000 bed days) and teicoplanin (Δ 2009-2012 = -28 DDD/1,000 bed days) use.

Reacción en cadena de la polimerasa para la detección de Salmonella sp. en leche en polvo: optimización del método en 12 horas / Polimerase chain reaction technique for detecting Salmonella sp. in powdered milk: optimization of the method in 12 hours

Los métodos tradicionales para identificar Salmonella sp. se basan en el empleo de medios de cultivo que permiten la recuperación del microorganismo, el aislamiento en medios selectivos, la identificación bioquímica y caracterización serológica. Estos métodos son dispendiosos, tienen baja especificidad, baja sensibilidad y consumen mucho tiempo. El principal objetivo de este trabajo fue estandarizar y optimizar la técnica de PCR para detectar Salmonella sp. en 12 horas, a partir de ADN de cultivos puros y en muestras de leche en polvo, inoculadas intencionalmente con 200, 20 y 2 UFC/mL. Para la extracción del ADN se estudió la conveniencia de fenol:cloroformo:alcohol isoamílico y Chelex® 100. La temperatura de hibridización y las concentraciones de cloruro de magnesio, empleando un diseño factorial incompleto 6x7, permitieron establecer un límite de detección de hasta 10 pg de ADN en cultivos puros de Salmonella typhi. La PCR se basó en la exclusividad de los oligonucleótidos 139-141, los cuales amplificaron una banda de 284 pb para la identificación de género. Los resultados muestran que: (I) la adición de Novobiacina (45 mg/L) o de verde brillante (10 mg/L) como inhibidores de flora acompañante, después de las primeras tres horas del pre-enriquecimiento no selectivo de 6 horas, no influye significativamente en la recuperación de las células bacterianas; (II) obtener biomasa de la primera dilución en base 10 y emplear la técnica de fenol:cloroformo:alcohol isoamílico para la obtención de ADN, se pueden detectar 2 UFC/mL de Salmonella sp. en leche en polvo y que el tiempo de detección se reduce considerablemente...

The traditional methods to identify Salmonella sp. are based on the culture medium use that allows the recovery of the micro organism, isolation in selective media, biochemical and serologic characterization. These methods are tedious, have a low specificity and sensitivity and they generally consume a long time. The main objective of this study was to standardize and to optimize the PCR technique to detect Salmonella sp. in 12 hours, from DNA of pure cultures and from powdered milk samples, intentionally inoculated with 200, 20 and 2 CFU/mL. For the extraction of DNA, two methods were used: phenol:chloroform:isoamyl alcohol and chelex® 100. The optimization of the temperature of hibridización and the concentrations of Magnesium Chloride, using an incomplete factorial desing 6x7 allowed to establish a detection limit of up to 10 pg of DNA from pure cultures of Salmonella typhi. The PCR was based on the specificity of oligonucleotidos the 139-141, that amplified a band of 284 pb for the gender identification. The results show that: (I) the inhibitor addition of accompanying flora like Novobiocin (45 mg/L) or brilliant green (10 mg/L) as inhibitors of accompanying flora, after the first three hours in the nonselective pre-enrichment of 6 hours, does not significantly influence in the recovery of the bacterial cells, (II) when obtaining biomass of the first dilution in base 10 and using the phenol:chloroform:isoamyl alcohol technique for the extraction of DNA; can be detected 2 CFU/mL Salmonella s.p. from powdered milk and that the PCR technique reduces the time of test considerably...

Infección nosocomial: Algunas consideraciones éticas en el diagnóstico microbiológico / Nosocomial infection. Some ethical considerations in the microbiological diagnosis

La bioética surgió en la década de los años 70 como una disciplina ante el impetuoso avance de las ciencias biológicas y otras afines, lo que demostró una vez más las enormes potencialidades de la ciencia cuando se aplica en beneficio de la sociedad. En la época actual los avances científicos y los cambios tecnológicos se acompañan de nuevas actitudes sociales y culturales, y en no pocas ocasiones esos cambios provocan inquietudes, preocupaciones y hasta temores, aunque también esperanza por los caminos que se abren y por las perspectivas imprevisibles a que pueden dar lugar. En el presente trabajo se dan a conocer algunas consideraciones éticas en el desarrollo del diagnóstico microbiológico de las infecciones nosocomiales, se hacen reflexiones de interés tanto para el profesional como para el técnico que se desempeñan en estas actividades y se destaca no solamente el espíritu de humanismo y de responsabilidad social en las acciones concretas del diagnóstico sino, además, la protección de la comunidad y del medio ambiente en su conjunto.

Bioethics appears in the 70's as a discipline before the impetuous advance of biological sciences and other related sciences, which showed once more the enormous potentialities of science when it is applied for the benefit of society. At present, the scientific advances and technological changes are accompanied with new social and cultural attitudes and, in not a few ocassions, these changes cause concerns, preoccupations and even fear, but also hope for the ways that are paved and for the unpredictable perspectives they may have. Some ethical considerations in the development of the microbiological diagnosis of nosocomial infections are made known in this paper. Interesting reflections are made for the professional and the technician carrying out these activities. It is stressed not only the spirit of humanism and social responsibility shown in the concrete actions of the diagnosis, but also the protection of the community and the environment as a whole.