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1.
Front Plant Sci ; 15: 1412170, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38933464

RESUMO

Introduction: Over the course of four consecutive years, a comparative study, for the first time, was carried out to assess their growth characteristics, vegetative and productive performances. Material: Micropropagated, grafted on not suckering rootstock and own-rooted plants by layering from three Italian hazelnut (Corylus avellana L.) cultivars were established in the same orchard and environmental condition. Results: We found that the micropropagated plants, regardless of the variety considered, even being smaller than the other plants at the beginning of the plantation, reached similar sizes as the other plants after four growing seasons. Furthermore, micropropagated plants exhibited greater uniformity in growth compared to grafted ones, while own-rooted plants displayed more variability. No significant differences in yield performance and canopy volume were observed among the three propagation methods. These results suggest that the in vitro propagation technique, even in hazelnut, allows standardizing the plant material while preserving cultivar characteristics. Finally, in vitro propagation as well as grafting can be safely recommended for the cultivation of hazelnut cultivars.

2.
Environ Sci Pollut Res Int ; 30(36): 85494-85507, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-37389751

RESUMO

Mercury contamination from human activities is a severe environmental problem. The low cost of rhizofiltration of heavy metal-contaminated environments is causing an increasing interest in these technologies. The present study demonstrates the effectiveness of mercury removal from water by phytoremediation using S. natans. Plants cultured and collected from the environment were used. The study used Hoagland's liquid medium contaminated with mercury: 0.15, 0.20, and 0.30. The bioconcentration factor obtained was 275-780. The relative growth rate was up to 0.12 g/gd and was much better for cultured plants than those collected from the environment. The removal rate of toxic metal was up to 94%. Total protein increased for cultures plants by up to 84%, while it decreased by up to 30% for those taken from the environment. Total chlorophyll for cultured plants decreased by up to 54%, which could be due to the toxic effect of the metal.


Assuntos
Mercúrio , Metais Pesados , Traqueófitas , Humanos , Mercúrio/análise , Biodegradação Ambiental , Água/metabolismo , Metais Pesados/análise , Traqueófitas/metabolismo , Plantas/metabolismo
3.
Environ Sci Pollut Res Int ; 30(27): 70121-70130, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-37145353

RESUMO

Nitrogenous fertilizers have low efficiency in alkaline calcareous soils due to volatilization and denitrification. These losses cause economic environmental constraints. Coating of urea with nanoparticles (NPs) is an innovative strategy to improve crop yields by sustaining N availability. In the current study, zinc oxide nanoparticles (ZnO NPs) were synthesized by precipitation method and characterized for morphology and configuration, bond formation, and crystal assemblage using the X-ray diffraction and scanning electron microscope (SEM). The SEM results confirmed the size of ZnO NPs in the size range of 25 nm with cuboid shape. Urea fertilizer, coated with ZnO NPs, was applied to wheat crop in a pot trial. Two rates of ZnO NPs at 2.8 and 5.7 mg kg-1 were selected to coat the commercial urea. A batch experiment was conducted to ensure the ammonium (NH4+) and nitrate (NO3-) ions release by amending the soil with ZnO NPs coated urea and comparing with non-amended soil. The gradual release of NH4+ was observed for 21 days from the ZnO NP-coated urea. In the second part of trial, seven different treatments of coated and uncoated urea were tested on wheat crop. Urea coated with ZnO nanoparticles at 5.7 mg kg-1 improved all growth attributes and yields. The ZnO NP coated urea increased the N content shoot (1.90 g 100g-1 DW) and potentially biofortified Zn content (47.86 mg kg-1) in wheat grain. The results are indicative of viability of a novel coating for commercial urea that will not only reduce N losses but also supplement Zn without additional cost of labor.


Assuntos
Nanopartículas , Óxido de Zinco , Óxido de Zinco/química , Zinco/análise , Triticum , Solo/química , Disponibilidade Biológica , Ureia , Nitrogênio , Nanopartículas/química
4.
Tree Physiol ; 43(9): 1562-1570, 2023 09 06.
Artigo em Inglês | MEDLINE | ID: mdl-37209115

RESUMO

Relative growth rate (RGR) is a standardized measure of growth that accounts for the difference in initial organ size. Relative growth rate sets the sink strength potential that, in combination with dark respiration (Rd), determines the carbon need of organs. Total Rd is the sum of maintenance respiration and growth respiration (Rg). The first provides energy for the maintenance of the existing cell structures, while the latter provides energy for growth. Dark respiration is mainly driven by temperature, but it varies during the season according to temperature acclimation and organ growth. Temperature acclimation is defined as the variation of Rd following the exposure to short or long periods of different temperatures. Temperature strongly affects growth and drives the Rg component of Rd. We hypothesized that RGR has a fundamental role in Rd variation during the season. The aims of the study were to determine the following: (i) if there was a variation of leaf Rd over the season and if such variation could be due to acclimation and/or RGR; (ii) the type of acclimation (i.e., Type I or II) on fully expanded leaves and newly formed leaves; and finally, (iii) if acclimation or RGR should be included to model Rd variation over the season. Leaf Rd was measured in field-grown plants from bud break to summer. Different cohorts of leaves were used to test the effect of exposure to different temperature regimes during leaf formation. The only case of acclimation was found in fully expanded leaves. It was an acclimation of Type II. Under field conditions, acclimation of filbert leaves, Rd to temperature was limited since most of the Rd variation during the season was explained by RGR. Our work suggests that RGR is a fundamental parameter that should be included in addition to temperature to model seasonal Rd pattern.


Assuntos
Corylus , Temperatura , Aclimatação , Respiração , Folhas de Planta/metabolismo
5.
Ann Bot ; 131(4): 555-568, 2023 04 28.
Artigo em Inglês | MEDLINE | ID: mdl-36794962

RESUMO

BACKGROUND: Relative growth rate (RGR) has a long history of use in biology. In its logged form, RGR = ln[(M + ΔM)/M], where M is size of the organism at the commencement of the study, and ΔM is new growth over time interval Δt. It illustrates the general problem of comparing non-independent (confounded) variables, e.g. (X + Y) vs. X. Thus, RGR depends on what starting M(X) is used even within the same growth phase. Equally, RGR lacks independence from its derived components, net assimilation rate (NAR) and leaf mass ratio (LMR), as RGR = NAR × LMR, so that they cannot legitimately be compared by standard regression or correlation analysis. FINDINGS: The mathematical properties of RGR exemplify the general problem of 'spurious' correlations that compare expressions derived from various combinations of the same component terms X and Y. This is particularly acute when X >> Y, the variance of X or Y is large, or there is little range overlap of X and Y values among datasets being compared. Relationships (direction, curvilinearity) between such confounded variables are essentially predetermined and so should not be reported as if they are a finding of the study. Standardizing by M rather than time does not solve the problem. We propose the inherent growth rate (IGR), lnΔM/lnM, as a simple, robust alternative to RGR that is independent of M within the same growth phase. CONCLUSIONS: Although the preferred alternative is to avoid the practice altogether, we discuss cases where comparing expressions with components in common may still have utility. These may provide insights if (1) the regression slope between pairs yields a new variable of biological interest, (2) the statistical significance of the relationship remains supported using suitable methods, such as our specially devised randomization test, or (3) multiple datasets are compared and found to be statistically different. Distinguishing true biological relationships from spurious ones, which arise from comparing non-independent expressions, is essential when dealing with derived variables associated with plant growth analyses.


Assuntos
Desenvolvimento Vegetal , Folhas de Planta
6.
Front Plant Sci ; 13: 1034238, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36523621

RESUMO

The Lemnaceae family (duckweed) consists of at least three recognized genera with six reported species in Iran that are distributed in wetlands. Duckweeds are the simplest and smallest flowering aquatic monocots with free-floating fronds that can reproduce asexually every 2-3 days. Duckweed could be a major source of balanced amino acids and high protein content, which is increasingly promising for biotechnological applications. For molecular classification and species identification of the collected samples, DNA barcoding was performed using two standard chloroplast markers, the spacer region between the ATP synthase subunits F and H (atpF-atpH) and the intron region of the ribosomal protein S16 (rps16). The results confirm the presence of four species belonging to the two genera Lemna and Spirodela. In addition, L. turionifera was detected for the first time in Iran. Due to the high growth rates of duckweed, measurement of biomass accumulation and doubling time are important factors in determining growth potential, especially for native species. The relative growth rates (RGR), doubling times (DT), biomass accumulation, and relative weekly yields (RY) of 40 distinct duckweed clones were determined under standard cultivation conditions. The dry weight-based RGR ranged from 0.149 to more than 0.600 per day, DT from 1.12 to 9 days, and RY from 7 to 108.9 per week. All values are comparable with previous studies. RGR and RY of selected clones are higher than the growth potential for a wide range of wild plants and common crops. These data support that native duckweed has high productivity value and should be further investigated as a potentially rich protein source for alternative human food, livestock feed, and recombinant protein production.

7.
Front Cell Dev Biol ; 10: 787730, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35445026

RESUMO

Background: Photoreceptive proteins play critical physiological roles in human skin cells. The retinal G protein-coupled receptor (RGR) is a photoisomerase in the human retina, but its expression and cellular functions in human skin cells have not been reported. Objectives: We aimed to detect RGR expression in various skin cells and evaluate its regulation of the cellular functions of keratinocytes. Methods: The expression, distribution, and subcellular location of the RGR in normal human epidermal keratinocytes and cells with pathological conditions including psoriasis, seborrheic keratosis, and squamous cell carcinoma were determined using microscopic tools (immunohistochemical staining, immunofluorescence staining, and immunoelectron microscopy) and Western blotting (WB). The protein levels of the RGR in primary human melanocytes, keratinocytes, and fibroblasts isolated from the neonatal foreskin were measured by WB. The expression and subcellular localization of the RGR in these cells were detected by immunofluorescence staining under a fluorescence microscope and laser scanning confocal microscope. Additionally, the levels of RGR expression in normal keratinocytes exposed to ultraviolet (UV)-A or total ultraviolet radiation (UVR) in the presence or absence of all-trans-retinal were measured by WB. Furthermore, the effects of the RGR on human keratinocyte functions including proliferation, migration, and apoptosis were evaluated using the Cell Counting Kit 8, wound healing, and Transwell assays after reducing the RGR mRNA level in keratinocytes using small interfering RNA technology. Results: The RGR was primarily located in the epidermal basal and spinous layers and skin appendages. Its expression increased in psoriatic lesions, seborrheic keratosis, and squamous cell carcinoma. Confocal microscopy showed that the RGR was located in the cell membrane and nucleus of keratinocytes, melanocytes, and fibroblasts. Keratinocytes had a higher expression of the RGR than melanocytes and fibroblasts, as well as nuclear expression, according to nuclear/cytoplasmic fractionation. Colloidal gold immunoelectron microscopy technology further confirmed that the RGR is mainly located in the nucleoplasm and mitochondria and is scattered in the cytoplasm and other organelles in the epidermal keratinocytes. Notably, RGR knockdown in keratinocytes led to the inhibition of cell proliferation and migration, augmenting cell apoptosis. Conclusions: This study is the first to demonstrate the presence of RGR in the human skin. Our findings indicate that the RGR may play a critical role in the physiological function of epidermal keratinocytes.

8.
Front Plant Sci ; 13: 856099, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35463393

RESUMO

Lolium perenne (L.) is one of the most important species in temperate grasslands. Temperature is a major factor controlling plant development. Breeding L. perenne cultivars adapted to new ranges of temperature could be necessary under most climate change scenarios. However, before any breeding effort in such direction, knowing the intraspecific variability of responses to temperature is essential. Our objective was to analyze a sample of accessions of L. perenne for their response to constant temperature during germination and initial heterotrophic growth. Eight accessions were taken out from a genebank containing 160 accessions. Six accessions were wild populations collected in different places in France and the other two were populations from a selection program. For germination, four replicates of 100 seeds per accession were tested in Petri dishes in the dark at eight constant temperatures, from 5 to 40°C with increases of 5°C. Germination countings were carried out at variable time intervals and durations that depended on treatments. For initial heterotrophic growth analysis, seeds were germinated at 25°C. Sets of 30 seedlings per accession were placed in polypropylene boxes on blotter blue paper and transferred to each one of the eight treatments in the dark. They were pictured at variable time intervals for root and shoot growth measurement by image analysis. Neither seed germination nor heterotrophic growth was observed at 40°C, for any accession. Temperature and time course response surfaces were markedly different between accessions. Equally, maximum germinability and the shape of the response curves to temperature were significantly different between accessions. This means that limited similarities between responses were observed. Furthermore, germination rates followed the non-linear beta function with significant differences between some accessions. These also showed significant differences in their root and shoot growth rate in response to temperature. In general, the relative growth rates of roots and shoots were slow at 5°C, peaked between 25 and 30°C, and showed a sharp reduction afterward. These results reveal, for the first time, high genetic variability within L. perenne germplasm for the response to temperature in the initial life phases. This discovered variability should serve breeders to create perennial ryegrass varieties for the future.

9.
J Nutr Sci ; 11: e21, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35399553

RESUMO

Dietary starch contains rapidly (RAG) and slowly available glucose (SAG). To establish the relationships between the RAG:SAG ratio and postprandial glucose, insulin and hunger, we measured postprandial responses elicited by test meals varying in the RAG:SAG ratio in n 160 healthy adults, each of whom participated in one of four randomised cross-over studies (n 40 each): a pilot trial comparing six chews (RAG:SAG ratio 2·4-42·7) and three studies comparing a test granola (TG1-3, RAG:SAG ratio 4·5-5·2) with a control granola (CG1-3, RAG:SAG ratio 54·8-69·3). Within studies, test meals were matched for fat, protein and available carbohydrate. Blood glucose, serum insulin and subjective hunger were measured for 3 h. Data were subjected to repeated-measures analysis of variance (ANOVA). The relationships between the RAG:SAG ratio and postprandial end points were determined by regression analysis. In the pilot trial, 0-2 h glucose incremental areas under the curve (iAUC0-2; primary end point) varied across the six chews (P = 0·014) with each 50 % reduction in the RAG:SAG ratio reducing relative glucose response by 4·0 %. TGs1-3 elicited significantly lower glucose iAUC0-2 than CGs1-3 by 17, 18 and 17 %, respectively (similar to the 15 % reduction predicted by the pilot trial). The combined means ± sem (n 120) for TC and CG were glucose iAUC0-2, 98 ± 4 v. 118 ± 4 mmol × min/l (P < 0·001), and insulin iAUC0-2, 153 ± 9 v. 184 ± 11 nmol × h/l (P < 0·001), respectively. Neither postprandial hunger nor glucose or hunger increments 2 h after eating differed significantly between TG and CG. We concluded that TGs with RAG:SAG ratios <5·5 predictably reduced glycaemic and insulinaemic responses compared with CGs with RAG:SAG ratios >54. However, compared with CG, TG did not reduce postprandial hunger or delay the return of glucose or hunger to baseline.


Assuntos
Grão Comestível , Insulina , Adulto , Glicemia/metabolismo , Grão Comestível/química , Grão Comestível/metabolismo , Glucose , Índice Glicêmico , Humanos , Período Pós-Prandial
10.
Molecules ; 26(19)2021 Oct 02.
Artigo em Inglês | MEDLINE | ID: mdl-34641534

RESUMO

Spodoptera litura Fab. is a polyphagous pest causing damage to many agriculture crops leading to yield loss. Recurrent usage of synthetic pesticides to control this pest has resulted in resistance development. Plant-derived diterpenoid compound andrographolide was isolated from the leaves of Andrographis paniculata. It was analysed by gas chromatography-mass spectroscopy and quantified by HPLC. Nutritional indices and digestive enzymatic profile were evaluated. Third, fourth and fifth instar larvae were treated with different concentrations of andrographolide. At 3, 6 and 9 ppm-treated concentrations the larvae showed decreased RGR, RCR, ECI, ECD values with adverse increase in AD. The digestive enzymes were significantly inhibited when compared with control. Conspicuously, andrographolide showed pronounced mortality of S. litura by inhibition of enzyme secretion and intake of food. The binding ability of andrographolide with CYTP450 showed high affinity with low binding energy. Andrographolide has the potential to be exploited as a biocontrol agent against S. litura as an eco-friendly pesticide.


Assuntos
Sistema Enzimático do Citocromo P-450/metabolismo , Diterpenos/farmacologia , Proteínas de Insetos/metabolismo , Inseticidas/farmacologia , Spodoptera/efeitos dos fármacos , Amilases/metabolismo , Andrographis/química , Animais , Diterpenos/isolamento & purificação , Diterpenos/metabolismo , Diterpenos/toxicidade , Relação Dose-Resposta a Droga , Inativação Metabólica/efeitos dos fármacos , Inseticidas/isolamento & purificação , Inseticidas/metabolismo , Inseticidas/toxicidade , Larva/efeitos dos fármacos , Lipase/metabolismo , Simulação de Acoplamento Molecular , Peptídeo Hidrolases/metabolismo
11.
Plants (Basel) ; 10(6)2021 Jun 12.
Artigo em Inglês | MEDLINE | ID: mdl-34204820

RESUMO

Nasturtium (Tropaeolum majus L.), as a medicinal plant, has a high phenolic content in its leaves and flowers. It is often used in salads as a dietary vegetable. Attracting strong demand, it could be a good candidate crop for a plant factory with artificial lighting (PFAL) that can achieve the mass production of high-quality crops with high productivity by regulating environmental conditions such as light. In this study, two experiments were conducted to investigate the effects of continuous lighting (CL) and different daily light integrals (DLIs) under CL on the growth, secondary metabolites, and light use efficiency (LUE) of nasturtium, all of which are essential in the successful cultivation in PFALs. In Experiment 1, two lighting models, the same DLI of 17.3 mol m-2 d-1 but different light periods (24 and 16 h) with different light intensities (200 and 300 µmol m-2 s-1, respectively), were applied to nasturtium. The results showed that leaf production, secondary metabolites, and LUE were higher under the 24-h CL treatment than under the 16-h non-CL treatment. In Experiment 2, three DLI levels (17.3, 25.9, and 34.6 mol m-2 d-1) under the CL condition were applied. The results showed that the growth parameters were positively correlated with the DLI levels under CL. The lowest DLI had the highest LUE. We conclude that the mass production of nasturtium under CL in PFALs is feasible, and the yield increases as DLI increases from 17.3 to 34.6 mol m-2 d-1 under CL without causing physiological stress on plants.

12.
Sci Total Environ ; 786: 147468, 2021 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-33975100

RESUMO

Plant functional traits are highly plastic to changes in climatic factors and nutrient availability. However, the intraspecific plant response to abiotic factors and the overall effect on tree growth and productivity is still under debate. We studied forest productivity for 30 Quercus ilex subsp. ballota forests in Spain along a broad climatic gradient of aridity (mean annual precipitation from 321 to 858 mm). We used linear mixed models to quantify the effect of climatic and edaphic (soil nutrients, topography, and texture) factors on tree functional traits (leaf and branch traits), and subsequently, the effect of such functional traits and abiotic factors on the relative growth rate (RGR) of adult trees. We used piecewise structural equation models (SEMs) to determine the causal effect of intrinsic and extrinsic factors on forest productivity. Our results showed that tree functional traits were mainly explained by climatic and edaphic factors. Functional traits and tree biomass explained forest biomass and RGR, respectively, which ultimately explained forest productivity. In conclusion, intraspecific variability of functional traits has a significant effect on plant biomass and growth, which ultimately may explain forest productivity in Quercus ilex forests.


Assuntos
Quercus , Árvores , Biomassa , Florestas , Espanha
13.
J Biol Rhythms ; 36(2): 109-126, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33765865

RESUMO

Animals have evolved light-sensitive G protein-coupled receptors, known as opsins, to detect coherent and ambient light for visual and nonvisual functions. These opsins have evolved to satisfy the particular lighting niches of the organisms that express them. While many unique patterns of evolution have been identified in mammals for rod and cone opsins, far less is known about the atypical mammalian opsins. Using genomic data from over 400 mammalian species from 22 orders, unique patterns of evolution for each mammalian opsins were identified, including photoisomerases, RGR-opsin (RGR) and peropsin (RRH), as well as atypical opsins, encephalopsin (OPN3), melanopsin (OPN4), and neuropsin (OPN5). The results demonstrate that OPN5 and rhodopsin show extreme conservation across all mammalian lineages. The cone opsins, SWS1 and LWS, and the nonvisual opsins, OPN3 and RRH, demonstrate a moderate degree of sequence conservation relative to other opsins, with some instances of lineage-specific gene loss. Finally, the photoisomerase, RGR, and the best-studied atypical opsin, OPN4, have high sequence diversity within mammals. These conservation patterns are maintained in human populations. Importantly, all mammalian opsins retain key amino acid residues important for conjugation to retinal-based chromophores, permitting light sensitivity. These patterns of evolution are discussed along with known functions of each atypical opsin, such as in circadian or metabolic physiology, to provide insight into the observed patterns of evolutionary constraint.


Assuntos
Evolução Molecular , Mamíferos/metabolismo , Opsinas/metabolismo , Opsinas/efeitos da radiação , Animais , Ritmo Circadiano/efeitos da radiação , Sequência Conservada , Humanos , Camundongos , Opsinas/química , Opsinas/genética , Receptores Acoplados a Proteínas G/química , Receptores Acoplados a Proteínas G/genética , Receptores Acoplados a Proteínas G/metabolismo , Receptores Acoplados a Proteínas G/efeitos da radiação , Retina/metabolismo , Retina/efeitos da radiação , Rodopsina/química , Rodopsina/genética , Rodopsina/metabolismo , Rodopsina/efeitos da radiação
14.
J Biol Chem ; 296: 100072, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33187985

RESUMO

All that we view of the world begins with an ultrafast cis to trans photoisomerization of the retinylidene chromophore associated with the visual pigments of rod and cone photoreceptors. The continual responsiveness of these photoreceptors is then sustained by regeneration processes that convert the trans-retinoid back to an 11-cis configuration. Recent biochemical and electrophysiological analyses of the retinal G-protein-coupled receptor (RGR) suggest that it could sustain the responsiveness of photoreceptor cells, particularly cones, even under bright light conditions. Thus, two mechanisms have evolved to accomplish the reisomerization: one involving the well-studied retinoid isomerase (RPE65) and a second photoisomerase reaction mediated by the RGR. Impairments to the pathways that transform all-trans-retinal back to 11-cis-retinal are associated with mild to severe forms of retinal dystrophy. Moreover, with age there also is a decline in the rate of chromophore regeneration. Both pharmacological and genetic approaches are being used to bypass visual cycle defects and consequently mitigate blinding diseases. Rapid progress in the use of genome editing also is paving the way for the treatment of disparate retinal diseases. In this review, we provide an update on visual cycle biochemistry and then discuss visual-cycle-related diseases and emerging therapeutics for these disorders. There is hope that these advances will be helpful in treating more complex diseases of the eye, including age-related macular degeneration (AMD).


Assuntos
Células Fotorreceptoras Retinianas Cones/metabolismo , Pigmentos da Retina/biossíntese , Vertebrados/fisiologia , Visão Ocular , Animais , Humanos , Isomerismo , cis-trans-Isomerases/metabolismo
15.
J Exp Zool B Mol Dev Evol ; 334(1): 25-36, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31743605

RESUMO

Opsins play important roles in the image-forming visual pathways and numerous biological systems such as the biological clock and circadian rhythm. However, the nonvisual opsins involved in nonimage forming process are not clear to date. The aim of this study was to characterize nonvisual opsins in Paralichthys olivaceus. A total of 24 nonvisual opsin genes were identified. Expressions of these genes in eye, brain, heart, testis, and fin were investigated by quantitative real-time polymerase chain reaction (qRT-PCR). Testis contained a surprisingly large number of nonvisual opsins including Opn4m2, Tmt2a, Tmt3b, Opn3, RRH, Opn7a, and Opn7b. Syntenic and phylogenetic analyses confirmed that the RGRa and RGRb originated from the teleost-specific genome duplication (TSGD). qRT-PCR results demonstrated high RGRa and RGRb expression in the eye, while the expression levels in the brain, heart, testis, and fin were relatively weak. In situ hybridization results presented here revealed the presence of both RGRa and RGRb mRNA-positive signals in the ganglion cell layer but absence in the intracellular compartment of retinal pigment epithelium (RPE) and Müller glial cells. Therefore, we hypothesized that RGRa and RGRb had undergone subfunctionalization in P. olivaceus after TSGD. In conclusion, this study provides novel insights into the evolutionary fates of the RGR genes, still, further studies need to be done to explore the mechanism about the lack of RGR genes' expression in RPE.


Assuntos
Proteínas do Olho/metabolismo , Linguados/metabolismo , Estudo de Associação Genômica Ampla , Opsinas/genética , Receptores Acoplados a Proteínas G/metabolismo , Animais , Proteínas do Olho/genética , Regulação da Expressão Gênica , Opsinas/metabolismo , Phyllachorales , Receptores Acoplados a Proteínas G/genética , Distribuição Tecidual , Transcriptoma
16.
J Exp Bot ; 71(1): 11-21, 2020 01 01.
Artigo em Inglês | MEDLINE | ID: mdl-31613967

RESUMO

Plant growth is a highly complex biological process that involves innumerable interconnected biochemical and signalling pathways. Many different techniques have been developed to measure growth, unravel the various processes that contribute to plant growth, and understand how a complex interaction between genotype and environment determines the growth phenotype. Despite this complexity, the term 'growth' is often simplified by researchers; depending on the method used for quantification, growth is viewed as an increase in plant or organ size, a change in cell architecture, or an increase in structural biomass. In this review, we summarise the cellular and molecular mechanisms underlying plant growth, highlight state-of-the-art imaging and non-imaging-based techniques to quantitatively measure growth, including a discussion of their advantages and drawbacks, and suggest a terminology for growth rates depending on the type of technique used.


Assuntos
Genótipo , Fenótipo , Desenvolvimento Vegetal , Genômica , Desenvolvimento Vegetal/genética , Desenvolvimento Vegetal/fisiologia
17.
Br J Nutr ; 121(11): 1264-1270, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-31068229

RESUMO

Oats can be processed in a variety of ways ranging from minimally processed such as steel-cut oats (SCO), to mildly processed such as large-flake oats (old fashioned oats, OFO), moderately processed such as instant oats (IO) or highly processed in ready-to-eat oat cereals such as Honey Nut Cheerios (HNC). Although processing is believed to increase glycaemic and insulinaemic responses, the effect of oat processing in these respects is unclear. Thus, we compared the glycaemic and insulinaemic responses elicited by 628 kJ portions of SCO, OFO, IO and HNC and a portion of Cream of Rice cereal (CR) containing the same amount of available-carbohydrate (23 g) as the oatmeals. Healthy males (n 18) and females (n 12) completed this randomised, cross-over trial. Blood was taken fasting and at intervals for 3 h following test-meal consumption. Glucose and insulin peak-rises and incremental AUC (iAUC) were subjected to repeated-measures ANOVA using Tukey's test (two-sided P<0·05) to compare individual means. Glucose peak-rise (primary endpoint, mean (sem) mmol/l) after OFO, 2·19 (sem 0·11), was significantly less than after CR, 2·61 (sem 0·13); and glucose peak-rise after SCO, 1·93 (sem 0·13), was significantly less than after CR, HNC, 2·49 (sem 0·13) and IO 2·47 (sem 0·13). Glucose iAUC was significantly lower after SCO than CR and HNC. Insulin peak rise was similar among the test meals, but insulin iAUC was significantly less after SCO than IO. Thus, the results show that oat processing affects glycaemic and insulinaemic responses with lower responses associated with less processing.


Assuntos
Avena/metabolismo , Grão Comestível/metabolismo , Manipulação de Alimentos/métodos , Índice Glicêmico/fisiologia , Insulina/sangue , Adulto , Análise de Variância , Área Sob a Curva , Glicemia/metabolismo , Estudos Cross-Over , Jejum/sangue , Feminino , Voluntários Saudáveis , Humanos , Masculino , Refeições/fisiologia , Oryza/metabolismo , Período Pós-Prandial
18.
Methods Mol Biol ; 1917: 147-154, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30610634

RESUMO

CRISPR/Cas9 gene editing technology has successfully introduced modifications at target DNA sequences in many plant species including Arabidopsis. After the target gene is edited, the CRISPR/Cas9 construct needs to be removed to ensure genetic stability and to gain any regulatory approval for commercial applications. However, removal of the transgenes by genetic segregation, backcross, and genotyping is very laborious and time-consuming. The methods we report here allow fast and effective isolation of transgene-free T2 Arabidopsis plants with the desired modifications at the target genes. We express a fluorescence protein mCherry under the control of a seed-specific promoter At2S3 and placed the cassette into the CRISPR/Cas9 vector. Therefore, we can use mCherry as a proxy for the presence of Cas9, and we are able to visually isolate the Cas9-free Arabidopsis plants with heritable mutations at the T2 generation. We targeted two sites in the ABP1 gene to demonstrate the effectiveness of our approach.


Assuntos
Arabidopsis/genética , Sistemas CRISPR-Cas/genética , Repetições Palindrômicas Curtas Agrupadas e Regularmente Espaçadas/genética , RNA Guia de Cinetoplastídeos/genética , Edição de Genes/métodos , Proteínas Luminescentes/genética , Plantas Geneticamente Modificadas/genética , Edição de RNA/genética , Proteína Vermelha Fluorescente
19.
New Phytol ; 222(1): 171-182, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30451299

RESUMO

The concentrations of nonstructural carbohydrates (NSCs) in plant tissues are commonly used as an indicator of total plant carbon (C) supply; but some evidence suggests the possibility for high NSC concentrations during periods of C limitation. Despite this uncertainty, NSC dynamics have not been investigated experimentally under long-term C limitation. We exposed saplings of 10 temperate tree species differing in shade tolerance to 6% of ambient sunlight for 3 yr to induce C limitation, and also defoliated one species, Carpinus betulus, in the third season. Growth and NSC concentrations were monitored to determine C allocation. Shade strongly reduced growth, but after an initial two-fold decrease, NSC concentrations of shaded saplings recovered to the level of unshaded saplings by the third season. NSC concentrations were generally more depleted under shade after leaf flush, and following herbivore attacks. Only under shade did artificial defoliation lead to mortality and depleted NSC concentrations in surviving individuals. We conclude that, irrespective of shade tolerance, C storage is maintained under prolonged shading, and thus high NSC concentrations can occur during C limitation. Yet, our results also suggest that decreased NSC concentrations are indicative of C limitation, and that additional leaf loss can lead to lethal C shortage in deep shade.


Assuntos
Carbono/metabolismo , Árvores/metabolismo , Biomassa , Carboidratos/análise , Herbivoria/fisiologia , Fatores de Tempo , Árvores/crescimento & desenvolvimento
20.
Plant Methods ; 14: 63, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30065776

RESUMO

BACKGROUND: The model species Arabidopsis thaliana has extensive resources to investigate intraspecific trait variability and the genetic bases of ecologically relevant traits. However, the cost of equipment and software required for high-throughput phenotyping is often a bottleneck for large-scale studies, such as mutant screening or quantitative genetics analyses. Simple tools are needed for the measurement of fitness-related traits, like relative growth rate and fruit production, without investment in expensive infrastructures. Here, we describe methods that enable the estimation of biomass accumulation and fruit number from the analysis of rosette and inflorescence images taken with a regular camera. RESULTS: We developed two models to predict plant dry mass and fruit number from the parameters extracted with the analysis of rosette and inflorescence images. Predictive models were trained by sacrificing growing individuals for dry mass estimation, and manually measuring a fraction of individuals for fruit number at maturity. Using a cross-validation approach, we showed that quantitative parameters extracted from image analysis predicts more 90% of both plant dry mass and fruit number. When used on 451 natural accessions, the method allowed modeling growth dynamics, including relative growth rate, throughout the life cycle of various ecotypes. Estimated growth-related traits had high heritability (0.65 < H2 < 0.93), as well as estimated fruit number (H2 = 0.68). In addition, we validated the method for estimating fruit number with rev5, a mutant with increased flower abortion. CONCLUSIONS: The method we propose here is an application of automated computerization of plant images with ImageJ, and subsequent statistical modeling in R. It allows plant biologists to measure growth dynamics and fruit number in hundreds of individuals with simple computing steps that can be repeated and adjusted to a wide range of laboratory conditions. It is thus a flexible toolkit for the measurement of fitness-related traits in large populations of a model species.

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