Biodiversity dataset and atlas of the special area of conservation Montesinho/Nogueira, Portugal.

Background: The special area of conservation Montesinho/Nogueira (SAC-MN) is a key area for biodiversity conservation in the Iberian Peninsula. Covering an area of approximately 1081 km² in the northeast of Portugal mainland, the SAC-MN is home to a wide range of species, including several endemic and endangered species and priority habitats. Despite its ecological significance and importance for conservation, there is a lack of publicly available biodiversity data, which urges the need to create a comprehensive and up-to-date biodiversity dataset for the SAC-MN. New information: To bridge the knowledge gap on biodiversity in SAC-MN, we undertook a thorough data collection process, including species occurrence records and conservation status information at regional (Portugal) and European levels, from multiple sources. We collected and compiled this information for five major taxonomic groups (amphibians, birds, flora - vascular plants, mammals and reptiles) in SAC-MN, resulting in a total of 31,871 records with 1,312 documented species. In addition, we developed an easy-to-navigate web-based geographic information system (Web GIS). In this article, we present an in-depth report on the process of compiling and preparing data, as well as the development and design of our Web GIS to increase awareness and enhance understanding of the importance of preserving biodiversity in SAC-MN.

Leveraging Google Earth Engine for a More Effective Grassland Management: A Decision Support Application Perspective.

Grasslands cover a substantial portion of the earth's surface and agricultural land and is crucial for human well-being and livestock farming. Ranchers and grassland management authorities face challenges in effectively controlling herders' grazing behavior and grassland utilization due to underdeveloped infrastructure and poor communication in pastoral areas. Cloud-based grazing management and decision support systems (DSS) are needed to address this issue, promote sustainable grassland use, and preserve their ecosystem services. These systems should enable rapid and large-scale grassland growth and utilization monitoring, providing a basis for decision-making in managing grazing and grassland areas. In this context, this study contributes to the objectives of the EU LIFE IMAGINE project, aiming to develop a Web-GIS app for conserving and monitoring Umbria's grasslands and promoting more informed decisions for more sustainable livestock management. The app, called "Praterie" and developed in Google Earth Engine, utilizes historical Sentinel-2 satellite data and harmonic modeling of the EVI (Enhanced Vegetation Index) to estimate vegetation growth curves and maturity periods for the forthcoming vegetation cycle. The app is updated in quasi-real time and enables users to visualize estimates for the upcoming vegetation cycle, including the maximum greenness, the days remaining to the subsequent maturity period, the accuracy of the harmonic models, and the grassland greenness status in the previous 10 days. Even though future additional developments can improve the informative value of the Praterie app, this platform can contribute to optimizing livestock management and biodiversity conservation by providing timely and accurate data about grassland status and growth curves.

SuperMap-Based Research on the Spread Situation and Visual Monitoring Platform of Major Health Events.

To present information on infectious diseases caused by viruses clearly and track the changes of data in real-time, data visualization can be used preferentially considering that it can identify problems behind data accurately. In this paper, based on the SuperMap Online platform and Tianditu, a national platform for common geospatial information services, a risk level map of infectious diseases distribution area is made by Web GIS and cartography. Meanwhile, the platform plays an important role in information collection, management, analysis, prevention and control, and release of measures when a major health event spreads. The method shows many advantages, such as various visualization means, ease to be published and shared, simple operation, and programming realization, which may be taken as technical references for solving the same type of visualization application problems. The research also facilitates the data visualization and monitoring of the spread of infectious diseases in major health events, and can effectively provide services for monitoring, decision-making, dispatching, and handling the spread of infectious diseases.

A web-based geographic information system monitoring wildlife diseases in Abruzzo and Molise regions, Southern Italy.

BACKGROUND: Nowadays there is a worldwide consensus on the importance of conducting wildlife disease surveillance. Indeed, 60% of emerging infectious diseases are zoonotic in nature, and the majority of these (71.8%) originate in wildlife. Surveillance of wildlife diseases is crucial to prevent negative effects on human and animal health. Data digitization and sharing are among the main goals for the present and coming years. Geographic Information Systems (GIS) are increasingly used to analyze the geographical distribution of diseases and the relationships between pathogenic factors and their geographic environments. METHODS: Wild animal's samples collected in the Abruzzo and Molise regions and delivered to our laboratory are entered in our Laboratory Information System and processed to be displayed through the Web-GIS mash-up presented in this paper. We built it using both open source and proprietary solutions, to produce data driven interactive maps, charts and tables to help to understand the epidemiology of wild animal diseases, their spread and trend. RESULTS: Since 2013, 9.606 samples collected from wild animals have been analyzed in the laboratories of the IZS-Teramo and have been recorded in the system, facilitating the reporting to the judicial authorities and the identification of highly risky areas to set up control and repression measures. Moreover, thanks to the monitoring health protocol, a canine distemper epidemic in wolves has been detected and monitored in its temporal and spatial evolution, as well as cases of bovine tuberculosis in wild boars. CONCLUSIONS: While it is more evident that the starting point is to choose the right sampling method, it is for sure less obvious that the information system in which data is stored is equally important. In fact, it should give the possibility to consult it in an easy and instructive way. GIS allows immediately grasping the spatial relationships between the data itself and those between the data and the territory; it is an important tool to support veterinary services in managing epidemic and non-epidemic emergencies and performing epidemiological investigations, but also to examine control plans and identify new gaps and challenges.

A GIS-based interactive map enabling data-driven decision-making in Nigeria's food supply chain.

The accessibility of open-source data on fresh food supply chains provides key stakeholders from the public and private sectors with insights for better decision-making to drive food loss reduction. Nigeria has a fair amount of open-source agricultural and climate-related data. However, most of these datasets are not readily accessible. This paper presents a detailed method used to develop an interactive web Geographic Information System (GIS) tool that collates and visualizes available open-source datasets on Nigeria's Agricultural Sector with particular focus on the fresh produce supply chains. The following steps were used to create such an interactive map. •Open-source data were acquired in various forms, including tabular, vector, and rasters, processed and uploaded as layers on the interactive web map.•Most of the data needed some processing on open-source geographic information system applications and web-based computing platforms to transform them into sources of actionable insights•These final processed layers were then uploaded to a consolidated interactive web map built on the Google Earth Engine platform. The gathered open-source data includes crop production data, market prices, weather, road network, market locations, mobile coverage, water access, water scarcity, and food insecurity. The method described here also allows the reproduction of such maps for other countries.

Development of a Web GIS for small-scale detection and analysis of COVID-19 (SARS-CoV-2) cases based on volunteered geographic information for the city of Cologne, Germany, in July/August 2020.

BACKGROUND: Various applications have been developed worldwide to contain and to combat the coronavirus disease-19 (COVID-19) pandemic. In this context, spatial information is always of great significance. The aim of this study is to describe the development of a Web GIS based on open source products for the collection and analysis of COVID-19 cases and its feasibility in terms of technical implementation and data protection. METHODS: With the help of this Web GIS, data on this issue were collected voluntarily from the Cologne area. Using house perimeters as a data basis, it was possible to check, in conjunction with the Official Topographic Cartographic Information System object type catalog, whether buildings with certain functions, for example residential building with trade and services, have been visited more frequently by infected persons than other types of buildings. In this context, data protection and ethical and legal issues were considered. RESULTS: The results of this study show that the development of a Web GIS for the generation and evaluation of volunteered geographic information (VGI) with the help of open source software is possible. Furthermore, there are numerous data protection and ethical and legal aspects to consider, which not only affect VGI per se but also affect IT security. CONCLUSIONS: From a data protection perspective, more attention needs to be paid to the intervention and post-processing of data. In addition, official data must always be used as a reference for the actual spatial consideration of the number of infections. However, VGI provides added value at a small-scale level, so that valid information can also be reliably derived in the context of health issues. The creation of guidelines for the consideration of data protection, ethical aspects, and legal requirements in the context of VGI-based applications must also be considered. Trial registration The article does not report the results of a health care intervention for human participants.

A New Information System for the Management of Non-Epidemic Veterinary Emergencies.

The Italian National Veterinary Services, public health professionals, and policy makers are asked to participate at different levels in the decision-making process for the management of non-epidemic emergencies. A decision support system offering the different administrative and operational emergency management levels with a spatial and decisional tool to be used in the case of natural disasters is still missing at the national level. Within this context, the Italian General Directorate for Animal Health of the Ministry of Health funded a research project for the implementation of a new Veterinary Information System for Non-Epidemic Emergencies (SIVENE), an innovative real-time decision support tool for emergency response in a disaster management scenario. SIVENE was developed according to a multi-layer architecture with four integrated components: the database layer, which was implemented by an RDBMS Oracle 11 g; the ReST service layer, which was created using J2EE, Spring, and MyBatis technologies; the web application (business framework and user interface), which was developed in Angular4 framework using TypeScript language; and the web Geographic Information Systems (GIS), which was realized through the implementation of a geodatabase in Oracle RDBMS 11 g. This system allows us to build up and dynamically create a set of dedicated checklists to be used in the field when gathering the information needed for the management of non-epidemic emergencies; employ the application on mobile devices, such as tablets and smartphones; and use the web GIS to manage and visualize data of veterinary interest and territorial maps of risk and damage.

LionVu 2.0 Usability Assessment for Pennsylvania, United States.

The Penn State Cancer Initiative implemented LionVu 1.0 (Penn State University, United States) in 2017 as a web-based mapping tool to educate and inform public health professionals about the cancer burden in Pennsylvania and 28 counties in central Pennsylvania, locally known as the catchment area. The purpose of its improvement, LionVu 2.0, was to assist investigators answer person-place-time questions related to cancer and its risk factors by examining several data variables simultaneously. The primary objective of this study was to conduct a usability assessment of a prototype of LionVu 2.0 which included area- and point-based data. The assessment was conducted through an online survey; 10 individuals, most of whom had a masters or doctorate degree, completed the survey. Although most participants had a favorable view of LionVu 2.0, many had little to no experience with web mapping. Therefore, it was not surprising to learn that participants wanted short 10-15-minute training videos to be available with future releases, and a simplified user-interface that removes advanced functionality. One unexpected finding was the suggestion of using LionVu 2.0 for teaching and grant proposals. The usability study of the prototype of LionVu 2.0 provided important feedback for its future development.

Evaluating hotspots for stormwater harvesting through participatory sensing.

Geographic Information Systems have been widely accepted to manage and manipulate spatial data associated with the hydrologic response of a watershed. Due to climate change and drought impacts, there is a need to conserve freshwater resources, which can be accomplished by introducing the concept of stormwater harvesting. Apart from hotspot identification and site screening, several economic, social, cultural, environmental aspects need to be considered before finalizing the suitable site for stormwater harvesting. The shortlisted sites are commonly ranked by considering various parameters, i.e. water demand, availability of stormwater and distance to end-use locations, which relate to economic aspects. In the present study, socio-environmental considerations are also constituted by adopting a web-GIS based approach. The geospatial datasets and metadata associated with the study area are organized as a repository in the open source database server (PostgreSQL/PostGIS), which is further assessed and analyzed by using GeoServer. This technique publishes the geospatial datasets to the public domain websites that can be accessed and visualized around the clock and across the world. This will help stakeholders gather and store responses from water planners and inhabitants, while minimizing the time and cost associated with field visits for collecting individual responses. In this respect, a questionnaire is prepared that includes queries associated with site selection and the responses are gathered from various institutions, water professionals, stakeholders and residents. Once the responses are collected, the Analytic Hierarchy Process has been implemented to compute the relative weights of each criterion with respect to the responses collected. The weights thus obtained assisted the planners in deciding the suitable stormwater harvesting site for Dehradun city in India. In context to responses gathered the sites 'B' and 'D' are given the maximum weightage to be the suitable sites in the study region. Also, the socio-environmental criteria such as 'community acceptance', 'recreational activities' and 'need for water reuse' have gathered the maximum weightage from the responses for the specific sites. Hence, the proposed methodology demonstrated how water professionals, civilians, planners, stakeholders and public can be included as participants in water-related decision making processes.

A geographical information system for the management of the aquaculture data in the Adriatic Sea - the Strengthening of Centres for Aquaculture Production and Safety surveillance in the Adriatic countries experience: Present capabilities, tools and functions.

The European Commission (EC) regulation no. 854/2004 requires a systematic monitoring of chemical and microbiological contaminants in live bivalve molluscs, live echinoderms, live tunicates and live marine gastropods for human consumption through surveillance plans to be implemented in all European Union (EU) countries.A consortium of five Adriatic countries was set up in the framework of the Instrument of Pre-accession Assistance Adriatic Cross-border Cooperation Programme (IPA Adriatic CBC) 2007- 2013 with the aim of collecting data and distribute information on harvesting and production in mollusc areas. A web-based geographical information system (GIS) application was developed to support the partners to manage data and to make these data available to final users, policy makers and to risk assessors. The GIS for the Strengthening of Centres for Aquaculture Production and Safety surveillance in the Adriatic countries (CAPS2) is divided into two levels, the national and the supranational one, and it distributes spatial and epidemiological information coming from various data acquisition and management sites. The great innovation is the possibility for each country to use online drawing, modifying and change of the geographic areas according to national surveillance needs. Currently it hosts data coming from about 230 production and relay areas with more than 29,478 laboratory tests performed on collected samples since August 2014. Data collected are used by each national competent authority to classify production or relay areas according to the EC regulation mentioned and to conduct risk assessment studies to evaluate the level of consumers' exposure to contaminants in the consumption of bivalve mollusc products.

Disseminating near-real-time hazards information and flood maps in the Philippines through Web-GIS.

The Philippines being a locus of tropical cyclones, tsunamis, earthquakes and volcanic eruptions, is a hotbed of disasters. These natural hazards inflict loss of lives and costly damage to property. Situated in a region where climate and geophysical tempest is common, the Philippines will inevitably suffer from calamities similar to those experienced recently. With continued development and population growth in hazard prone areas, it is expected that damage to infrastructure and human losses would persist and even rise unless appropriate measures are immediately implemented by government. In 2012, the Philippines launched a responsive program for disaster prevention and mitigation called the Nationwide Operational Assessment of Hazards (Project NOAH), specifically for government warning agencies to be able to provide a 6hr lead-time warning to vulnerable communities against impending floods and to use advanced technology to enhance current geo-hazard vulnerability maps. To disseminate such critical information to as wide an audience as possible, a Web-GIS using mashups of freely available source codes and application program interface (APIs) was developed and can be found in the URLs http://noah.dost.gov.ph and http://noah.up.edu.ph/. This Web-GIS tool is now heavily used by local government units in the Philippines in their disaster prevention and mitigation efforts and can be replicated in countries that have a proactive approach to address the impacts of natural hazards but lack sufficient funds.

Remote Sensing for Crop Water Management: From ET Modelling to Services for the End Users.

The experiences gathered during the past 30 years support the operational use of irrigation scheduling based on frequent multi-spectral image data. Currently, the operational use of dense time series of multispectral imagery at high spatial resolution makes monitoring of crop biophysical parameters feasible, capturing crop water use across the growing season, with suitable temporal and spatial resolutions. These achievements, and the availability of accurate forecasting of meteorological data, allow for precise predictions of crop water requirements with unprecedented spatial resolution. This information is greatly appreciated by the end users, i.e., professional farmers or decision-makers, and can be provided in an easy-to-use manner and in near-real-time by using the improvements achieved in web-GIS methodologies (Geographic Information Systems based on web technologies). This paper reviews the most operational and explored methods based on optical remote sensing for the assessment of crop water requirements, identifying strengths and weaknesses and proposing alternatives to advance towards full operational application of this methodology. In addition, we provide a general overview of the tools, which facilitates co-creation and collaboration with stakeholders, paying special attention to these approaches based on web-GIS tools.

Control of Tungiasis in Absence of a Roadmap: Grassroots and Global Approaches.

Tungiasis is a tropical skin disease caused by the sand flea Tunga penetrans. It inflicts misery upon tens of millions of people, mostly children, across Central and South America and sub-Saharan Africa, and yet there is no globally accepted roadmap for its control. Here we review how research in the last 15 years has developed control methods and report on new grassroots and digital mapping approaches. Treatment is now possible with a two-component dimethicone, used for the treatment of headlice in Europe, Asia and Canada, but not yet available in most tungiasis-endemic areas. Prevention is possible through the daily use of repellents based on coconut oil. A Kenyan coastal community has successfully controlled tungiasis using a neem and coconut oil mix produced locally to treat cases, combined with spraying floors with neem solution and distributing closed shoes. Development of affordable hard floor technology is underway, although not yet widely available, but is a priority to control off-host stages in the floors of homes. A new web-based digital mapping application will enable researchers and health officials to collaborate, share data and map the prevalence of tungiasis. We conclude that tungiasis can be controlled through a multi-disciplinary, One Health approach.

Building a strategy for soil protection at local and regional scale--the case of agricultural wastes landspreading.

Agricultural wastes (AW) are produced in huge quantities worldwide and may cause detrimental effects on environmental quality, affecting soil, water, and air quality. Given the growing soil degradation worldwide, the need for more food of good quality and therefore the intensified agriculture, it is important to develop recycling plans even for those types of treated AW (e.g., composts) that are not considered hazardous. Two strategic approaches for safe and sustainable landspreading of organic wastes are proposed, depending on wastes properties and hazard potential, i.e., an approach appropriate for traditionally used wastes (manures and composts) and another approach for wastes that are potentially hazardous or hazardous and should only be reused under specific restrictions. Both approaches foresee concrete steps, require close cooperation between farmers and local/regional authorities, and are appropriate to ensure environmental sustainability at AW recycling or disposal areas. Desktop and web application tools are also presented that are anticipated to assist authorities in implementing their monitoring strategies.

Organização, disponibilização e possibilidades de análise de dados sobre desastres de origem climática e seus impactos sobre a saúde no Brasil / Organization, availability and possibility of analysis of disaster data of climate related origin and its impacts on health

A ocorrência de desastres muitas vezes é associada a processos naturais imprevisíveis. No entanto, a análise de grandes bases de dados permite mostrar tendências sazonais e de longo prazo, bem como padrões e áreas onde se concentram riscos. Neste trabalho é descrito o processo de aquisição e organização de dados sobre desastres, coletados pelos órgãos de defesa civil, e disponibilizados pelo Observatório Nacional de Clima e Saúde. As análises preliminares mostram a concentração de eventos desastres causados por chuvas intensas ao longo da costa brasileira, principalmente durante o verão. As secas apresentam maior duração e extensão, atingindo grande parte do sul e nordeste do país. Estes dados podem ser usados para analisar e monitorar o impacto de eventos climáticos extremos sobre a saúde, bem como seus determinantes de vulnerabilidade e clima.

The occurrence of disasters is often related to unforeseeable able natural processes. However, the analysis of major databases may highlight seasonal and long-term trends, as well as some spatial patterns where risks are concentrated. In this paper the process of acquiring and organizing climate-related disaster data collected by civil protection institutions and made available by the Brazilian Climate and Health Observatory is described. Preliminary analyses show the concentration of disasters caused by heavy rainfall events along the Brazilian coastline especially during the summer. Droughts have longer duration and extent, affecting large areas of the south and northeast regions of the country. These data can be used to analyze and monitor the impact of extreme climatic events on health, as well as identify the vulnerability and climate deteminants.