Who bit the boat? New DNA collection and genomic methods enable species identification in suspected shark-related incidents.

Species identification following shark-related incidents is critical for effective incident management and for collecting data to inform shark-bite mitigation strategies. Witness statements are not always reliable, and species identification is often ambiguous or missing. Alternative methods for species identification include morphological assessments of bite marks, analysis of collected teeth at the scene of the incident, and genetic approaches. However, access to appropriate collection media and robust genetic assays have limited the use of genetic technologies. Here, we present a case study that facilitated a unique opportunity to compare the effectiveness of medical gauze readily available in first-aid kits, and forensic-grade swabs in collecting genetic material for shark-species identification. Sterile medical gauze and forensic-grade swabs were used to collect transfer DNA from the bite margins on a bitten surf ski which were compared to a piece of shark tissue embedded along the bite margin. Witness accounts and the characteristics of the bite mark impressions inferred the involvement of a Carcharodon carcharias (white shark). The morphology of a tooth found on the boat that picked up the surf ski, however, suggested it belonged to an Orectolobus spp. (wobbegong). Genetic analysis of DNA transferred from the shark to the surf ski included the application of a broad-target nested PCR assay followed by Sanger sequencing, with white shark contribution to the 'total sample DNA' determined with a species-specific qPCR assay. The results of the genetic analyses were congruent between sampling methods with respect to species identification and the level of activity inferred by the donor-specific DNA contribution. These data also supported the inferences drawn from the bite mark morphology. DNA from the recovered tooth was PCR amplified with a wobbegong-specific primer pair designed for this study to corroborate the tooth's morphological identification. Following the confirmation of gauze used for sampling in the case study event, two additional isolated incidents occurred and were sampled in situ using gauze, as typically found in a first-aid kit, by external personnel. DNA extracted from these gauze samples resulted in the identification of a white shark as the donor of the DNA collected from the bite marks in both instances. This study, involving three incidents separated by time and location, represents the seminal application of gauze as a sampling media after critical human-shark interactions and strongly supports the practical implementation of these methods in the field.

Genome analysis reveals three distinct lineages of the cosmopolitan white shark.

The white shark (Carcharodon carcharias) (Linnaeus, 1758), an iconic apex predator occurring in all oceans,1,2 is classified as Vulnerable globally3-with global abundance having dropped to 63% of 1970s estimates,4-and as Critically Endangered in Europe.5 Identification of evolutionary significant units and their management are crucial for conservation,6 especially as the white shark is facing various but often region-specific anthropogenic threats.7,8,9,10,11 Assessing connectivity in a cosmopolitan marine species requires worldwide sampling and high-resolution genetic markers.12 Both are lacking for the white shark, with studies to date typified by numerous but geographically limited sampling, and analyses relying largely on relatively small numbers of nuclear microsatellites,13,14,15,16,17,18,19 which can be plagued by various genotyping artefacts and thus require cautious interpretation.20 Sequencing and computational advances are finally allowing genomes21,22,23 to be leveraged into population studies,24,25,26,27 with datasets comprising thousands of single-nucleotide polymorphisms (SNPs). Here, combining target gene capture (TGC)28 sequencing (89 individuals, 4,000 SNPs) and whole-genome re-sequencing (17 individuals, 391,000 SNPs) with worldwide sampling across most of the distributional range, we identify three genetically distinct allopatric lineages (North Atlantic, Indo-Pacific, and North Pacific). These diverged 100,000-200,000 years ago during the Penultimate Glaciation, when low sea levels, different ocean currents, and water temperatures produced significant biogeographic barriers. Our results show that without high-resolution genomic analyses of samples representative of a species' range,12 the true extent of diversity, presence of past and contemporary barriers to gene flow, subsequent speciation, and local evolutionary events will remain enigmatic.

Frequency regulation of interconnected hybrid power system with Assimilation of electrical vehicles.

Recent widespread connections of renewable energy resource (RESs) in place of fossil fuel supplies and the adoption of electrical vehicles in place of gasoline-powered vehicles have given birth to a number of new concerns. The control architecture of linked power networks now faces an increasingly pressing challenge: tie-line power fluctuations and reducing frequency deviations. Because of their nature and dependence on external circumstances, RESs are analogous to continually fluctuating power generators. Using a fractional order-based frequency regulator, this work presents a new method for improving the frequency regulation in a two-area interconnected power system. In order to deal with the frequency regulation difficulties of the hybrid system integrated with RES, the suggested controller utilizes the modified form of fractional order proportional integral derivative (FOPID) controller known as FOI-PDN controller. The new proposed controllers are designed using the white shark optimizer (WSO), a current powerful bioinspired meta heuristic algorithm which has been motivated by the learning abilities of white sharks when actively hunting in the environment. The suggested FOI-PDN controller's performance was compared to that of various control methodologies such as FOPID, and PID. Furthermore, the WSO findings are compared to those of other techniques such as the salp swarm algorithm, sine cosine algorithm and fitness dependent optimizer. The recommended controller and design approach have been tested and validated at different loading conditions and different circumstances, as well as their robustness against system parameter suspicions. The simulation outcomes demonstrate that the WSO-based tuned FOI-PDN controller successfully reduces peak overshoot by 73.33%, 91.03%, and 77.21% for region-2, region-1, and link power variation respectively, and delivers minimum undershoot of 89.12%, 83.11%, and 78.10% for both regions and tie-line. The obtained findings demonstrate the new proposed controller's stable function and frequency controlling performance with optimal controller parameters and without the requirement for a sophisticated design process.

An effective healthcare monitoring system in an IoMT environment for heart disease detection using the HANN model.

The proposed work aims to develop an automated machine learning based network model for heart disease prediction with better accuracy. In the pre-processed data, the most significant features are selected using the White Shark Optimization based Linear Discriminant Analysis (WSO-LDA) technique, reducing computational complexity. Finally, the selected features are fed to the Hybrid Artificial Neural Network (HANN) with a Multi-Objective Spotted Hyena optimization (MOSHO) based classification stage. This stage classifies heart disease with minimized processing time.

A Dual-Optimization Fault Diagnosis Method for Rolling Bearings Based on Hierarchical Slope Entropy and SVM Synergized with Shark Optimization Algorithm.

Slope entropy (SlopEn) has been widely applied in fault diagnosis and has exhibited excellent performance, while SlopEn suffers from the problem of threshold selection. Aiming to further enhance the identifying capability of SlopEn in fault diagnosis, on the basis of SlopEn, the concept of hierarchy is introduced, and a new complexity feature, namely hierarchical slope entropy (HSlopEn), is proposed. Meanwhile, to address the problems of the threshold selection of HSlopEn and a support vector machine (SVM), the white shark optimizer (WSO) is applied to optimize both HSlopEn and an SVM, and WSO-HSlopEn and WSO-SVM are proposed, respectively. Then, a dual-optimization fault diagnosis method for rolling bearings based on WSO-HSlopEn and WSO-SVM is put forward. We conducted measured experiments on single- and multi-feature scenarios, and the experimental results demonstrated that whether single-feature or multi-feature, the WSO-HSlopEn and WSO-SVM fault diagnosis method has the highest recognition rate compared to other hierarchical entropies; moreover, under multi-features, the recognition rates are all higher than 97.5%, and the more features we select, the better the recognition effect. When five nodes are selected, the highest recognition rate reaches 100%.

Evidence of increasing juvenile white sharks' (Carcharodon carcharias) habitat use at the Northern Channel Islands.

Juvenile white sharks (Carcharodon carcharias) typically aggregate along coastal beaches; however, high levels of recruitment and shifting oceanographic conditions may be causing habitat use expansions. Telemetry data indicate increased habitat use at the Northern Channel Islands (California, USA) by juvenile white shark that may be in response to increased population density at aggregation locations, or anomalous oceanographic events that impact habitat use or expand available habitat. Findings illustrate the need for long-term movement monitoring and understanding drivers of habitat use shifts and expansion to improve ecosystem management.

Sex Differences in the Individual Behaviour of Bait-Attracted White Sharks (Carcharodon carcharias, Linnaeus, 1758) Are Linked to Different Environmental Factors in South Africa.

The white shark (Carcharodon carcharias) is a charismatic species and, consequently, one of the most studied and protected sharks. This species can be found in a wide range of temperatures and depths, showing site fidelity and migrating across the oceans. This offers a challenge to understanding the processes influencing their lifecycle and, more importantly, assessing anthropogenic disturbances to their populations. These predators' behaviour has been linked to diverse abiotic factors. Here, an ethological approach was used to understand the influence of environmental variables on white shark behaviour. A different environmental impact was found between the activity of females and males toward the bait. Females performed a higher number of behaviours under daylight, lower sea surface temperatures, short wavelets, clear and cloudy skies, under La Niña events, elevated moonlight and high tides. Males behaved with more complexity at dawn, medium sea surface temperatures, large wavelets, few clouds, high tides, and elevated moonlight. The world's aquatic habitats are experiencing significant physiochemical shifts due to human-induced climate change. Knowledge about how white sharks respond to environmental factors is essential to guide management and conservation actions.

Microbiome structure in large pelagic sharks with distinct feeding ecologies.

BACKGROUND: Sharks play essential roles in ocean food webs and human culture, but also face population declines worldwide due to human activity. The relationship between sharks and the microbes on and in the shark body is unclear, despite research on other animals showing the microbiome as intertwined with host physiology, immunity, and ecology. Research on shark-microbe interactions faces the significant challenge of sampling the largest and most elusive shark species. We leveraged a unique sampling infrastructure to compare the microbiomes of two apex predators, the white (Carcharodon carcharias) and tiger shark (Galeocerdo cuvier), to those of the filter-feeding whale shark (Rhincodon typus), allowing us to explore the effects of feeding mode on intestinal microbiome diversity and metabolic function, and environmental exposure on the diversity of microbes external to the body (on the skin, gill). RESULTS: The fecal microbiomes of white and whale sharks were highly similar in taxonomic and gene category composition despite differences in host feeding mode and diet. Fecal microbiomes from these species were also taxon-poor compared to those of many other vertebrates and were more similar to those of predatory teleost fishes and toothed whales than to those of filter-feeding baleen whales. In contrast, microbiomes of external body niches were taxon-rich and significantly influenced by diversity in the water column microbiome. CONCLUSIONS: These results suggest complex roles for host identity, diet, and environmental exposure in structuring the shark microbiome and identify a small, but conserved, number of intestinal microbial taxa as potential contributors to shark physiology.

Passive Prey Discrimination in Surface Predatory Behaviour of Bait-Attracted White Sharks from Gansbaai, South Africa.

Between the years 2008 and 2013, six annual research expeditions were carried out at Dyer Island (Gansbaai, South Africa) to study the surface behaviour of white sharks in the presence of two passive prey: tuna bait and a seal-shaped decoy. Sightings were performed from a commercial cage-diving boat over 247 h; 250 different white sharks, with a mean total length (TL) of 308 cm, were observed. Of these, 166 performed at least one or more interactions, for a total of 240 interactions with bait and the seal-shaped decoy. In Gansbaai, there is a population of transient white sharks consisting mainly of immature specimens throughout the year. Both mature and immature sharks preferred to prey on the seal-shaped decoy, probably due to the dietary shift that occurs in white sharks whose TL varies between 200 cm and 340 cm. As it is widely confirmed that white sharks change their diet from a predominantly piscivorous juvenile diet to a mature marine mammalian diet, it is possible that Gansbaai may be a hunting training area and that sharks show a discriminate food choice, a strategy that was adopted by the majority of specimens thanks to their ability to visualize energetically richer prey, after having been attracted by the odorous source represented by the tuna bait.

The power of national acoustic tracking networks to assess the impacts of human activity on marine organisms during the COVID-19 pandemic.

COVID-19 restrictions have led to an unprecedented global hiatus in anthropogenic activities, providing a unique opportunity to assess human impact on biological systems. Here, we describe how a national network of acoustic tracking receivers can be leveraged to assess the effects of human activity on animal movement and space use during such global disruptions. We outline variation in restrictions on human activity across Australian states and describe four mechanisms affecting human interactions with the marine environment: 1) reduction in economy and trade changing shipping traffic; 2) changes in export markets affecting commercial fisheries; 3) alterations in recreational activities; and 4) decline in tourism. We develop a roadmap for the analysis of acoustic tracking data across various scales using Australia's national Integrated Marine Observing System (IMOS) Animal Tracking Facility as a case study. We illustrate the benefit of sustained observing systems and monitoring programs by assessing how a 51-day break in white shark (Carcharodon carcharias) cage-diving tourism due to COVID-19 restrictions affected the behaviour and space use of two resident species. This cessation of tourism activities represents the longest break since cage-diving vessels started day trips in this area in 2007. Long-term monitoring of the local environment reveals that the activity space of yellowtail kingfish (Seriola lalandi) was reduced when cage-diving boats were absent compared to periods following standard tourism operations. However, white shark residency and movements were not affected. Our roadmap is globally applicable and will assist researchers in designing studies to assess how anthropogenic activities can impact animal movement and distributions during regional, short-term through to major, unexpected disruptions like the COVID-19 pandemic.

Predicting potential future reduction in shark bites on people.

Despite the low chance of a person being bitten by a shark, there are serious associated costs. Electronic deterrents are currently the only types of personal deterrent with empirical evidence of a substantial reduction in the probability of being bitten by a shark. We aimed to predict the number of people who could potentially avoid being bitten by sharks in Australia if they wear personal electronic deterrents. We used the Australian Shark Attack File from 1900 to 2020 to develop sinusoidal time-series models of per capita incidents, and then stochastically projected these to 2066. We predicted that up to 1063 people (range: 185-2118) could potentially avoid being bitten across Australia by 2066 if all people used the devices. Avoiding death and injury of people over the next half-century is of course highly desirable, especially when considering the additional costs associated with the loss of recreational, commercial and tourism revenue potentially in the tens to hundreds of millions of dollars following clusters of shark-bite events.

Implications of life history uncertainty when evaluating status in the Northwest Atlantic population of white shark (Carcharodon carcharias).

To effectively protect at-risk sharks, resource managers and conservation practitioners must have a good understanding of how fisheries removals contribute to changes in abundance and how regulatory restrictions may impact a population trajectory. This means they need to know the number of animals being removed from a population and whether a given number of removals will lead to population increases or declines. For white shark (Carcharodon carcharias), theoretical quantities like the intrinsic rate of population increase or rebound potential (ability to increase in size following decline) are difficult to conceptualize in terms of real-world abundance changes, which limits our ability to answer practical management questions. To address this shortfall, we designed a simulation model to evaluate how our understanding of longevity and life history variability of white shark affects our understanding of population trends in the Northwest Atlantic. Then, we quantified the magnitude of removals that could have caused historical population declines, compared these to biologically based reference points, and explored the removal scenarios which would result in population increase. Our results suggest that removals on the order of 100s of juveniles per year could have resulted in population-level declines in excess of 60% during the 1970s and 1980s. Conservation actions implemented since the 1990s would have needed to be nearly 100% effective at preventing fishing mortality in order for the population to double in abundance over the last 30 years. Total removals from all fleets needed to be exceptionally small to keep them below biological reference points for white shark in the Northwest Atlantic. The population's inherent vulnerability to fishing pressure reaffirms the need for restrictive national and international conservation measures, even under a situation of abundance increase.

An evaluation of body condition and morphometric relationships within southern California juvenile white sharks Carcharodon carcharias.

Length, mass and girth relationships are presented for 112 juvenile white sharks (JWS) Carcharodon carcharias caught in the Southern California Bight (SCB) nursery area between June 2008 and August 2017. No difference was found between male and female JWS length-mass relationships, but data suggest that JWS in the SCB gain more mass per unit length for the juvenile size classes compared with other C. carcharias populations. Condition-factor-to-liver-mass and condition-factor-to-liver-lipid-content relationships revealed that length and mass (i.e., condition factor) can be used as a non-invasive proxy for body condition for juveniles of this species. The parameters estimated in this study are key information for population assessments of juvenile C. carcharias in the north-east Pacific Ocean and will contribute to the conservation and management of this IUCN Red List Vulnerable species.

Summer at the beach: spatio-temporal patterns of white shark occurrence along the inshore areas of False Bay, South Africa.

BACKGROUND: Understanding white shark (Carcharodon carcharias) habitat use in coastal areas adjacent to large cities, is an important step when formulating potential solutions to the conservation conflict that exists between humans and large predatory sharks. In this study, we present the findings of a 2.5-year study of white shark occurrence and movement patterns adjacent to the City of Cape Town in False Bay, South Africa, with a focus on spring and summer months. Fifty-one white sharks were monitored annually at three offshore and twelve inshore sites by VR2 acoustic receivers, over 975 days from 1 May 2005 to 31 December 2007. RESULTS: Occurrence patterns at inshore sites during spring and summer were analysed using a generalized additive mixed model (GAMM) with a spatial term (longitude, latitude), time of day and year included as explanatory variables for site use. We found that sharks occurred more frequently at inshore sites along the northern and northwestern shores, compared to the rest of the bay, and they transitioned most frequently between four adjacent beach sites that encompass the most popular recreational water use areas in Cape Town. There was significant diel variation, with higher shark occurrence around midday, and a peak in shark occurrence in 2005, when human-shark interactions also peaked. However, we found no effect of shark size on occurrence patterns at inshore sites. CONCLUSIONS: White sharks showed the highest levels of occurrence at specific inshore sites between Muizenberg and Strandfontein beach, and thus inclusion of these sites within False Bay's marine protected area (MPA) network or recognition as Ecological or Biological Significant Areas (EBSAs) should be a future consideration. These insights into white shark habitat use at inshore sites in False Bay are important for successfully applying the principles of marine spatial planning (MSP) and for making science-based policy decisions. Furthermore, this information can be used to reduce potential shark-human conflict by incorporating it into future shark safety education campaigns.

Development of the Lunate-Shaped Caudal Fin in White Shark Embryos.

The lunate-shaped caudal fin in lamnid sharks is a morphological specialization for their thunniform mode of locomotion, but its developmental process during gestation has been poorly investigated. Observations of 21 embryonic specimens of the white shark (Carcharodon carcharias) revealed that their caudal fin morphology drastically changes from strongly heterocercal to lunate-shaped through ontogeny. This morphological change involves (1) rapid elongation of the ventral lobe, (2) increased upward curvature of the vertebra within the caudal fin, and (3) formation of keels at both lateral sides of the caudal fin base. These morphological changes are probably shared among the members of the family Lamnidae and are in contrast with the developmental process of the heterocercal tail in the lamniform Carcharias taurus, in which the caudal fin morphology is almost unchanged through the late gestation period. Anat Rec, 301:1068-1073, 2018. © 2018 Wiley Periodicals, Inc.

Sharks in Captivity: The Role of Husbandry, Breeding, Education, and Citizen Science in Shark Conservation.

The role of public aquariums in promoting conservation has changed substantially over the decades, evolving from entertainment attractions to educational and research centres. In many facilities, larger sharks are an essential part of the collection and represent one of the biggest draws for the public. Displaying healthy elasmobranchs comes with many challenges, but improvements in husbandry techniques have enabled aquariums to have success with a variety of species. The establishment of organisations such as the Association of Zoos and Aquariums, and the completion of texts like the Elasmobranch Husbandry Manual, has helped set high standards of care for sharks in captivity and promoted international conservation efforts. Aquariums keeping sharks are in a unique position to influence local, regional, and international attitudes and policies by acting as both educational and research facilities. Interactions with multiple stakeholders of diverse educational and demographic backgrounds through the use of in-house advocacy, public outreach, media interviews, and partnerships with academic and government institutions enable these facilities to engage and share information with a broad audience. Although the data collected on sharks in captivity often cannot be directly translated to animals in the wild, it offers better insight into a number of life history traits and poorly understood behaviours, and has been the foundation for many captive breeding programs. Several Northeast Pacific (NEP) shark species are commonly displayed for long durations or bred in aquariums, while other less studied species have been held for short periods to collect valuable data that can be applied towards ongoing studies and conservation measures. Here, we discuss past and current tangible benefits of holding NEP sharks in captivity, as well as noting several ways in which future research and education activities will continue to inform and shape public opinions on shark management and conservation.

A novel application of multi-event modeling to estimate class segregation in a highly migratory oceanic vertebrate.

Spatial segregation of animals by class (i.e., maturity or sex) within a population due to differential rates of temporary emigration (TE) from study sites can be an important life history feature to consider in population assessment and management. However, such rates are poorly known; new quantitative approaches to address these knowledge gaps are needed. We present a novel application of multi-event models that takes advantage of two sources of detections to differentiate temporary emigration from apparent absence to quantify class segregation within a study population of double-marked (photo-identified and tagged with coded acoustic transmitters) white sharks (Carcharodon carcharias) in central California. We use this model to test if sex-specific patterns in TE result in disparate apparent capture probabilities (po ) between male and female white sharks, which can affect the observed sex ratio. The best-supported model showed a contrasting pattern of Pr(TE) from coastal aggregation sites between sexes (for males Pr[TE] = 0.015 [95% CI = 0.00, 0.31] and Pr[TE]= 0.57 [0.40, 0.72] for females), but not maturity classes. Additionally, by accounting for Pr(TE) and imperfect detection, we were able to estimate class-specific values of true capture probability (p* ) for tagged and untagged sharks. The best-supported model identified differences between maturity classes but no difference between sexes or tagging impacts (tagged mature sharks p*  = 0.55 (0.46-0.63) and sub-adult sharks p*  = 0.36 (0.25, 0.50); and untagged mature sharks p*  = 0.50 (0.39-0.61) and sub-adults p*  = 0.18 (0.10, 0.31). Estimated sex-based differences in po were linked to sex-specific differences in Pr(TE) but not in p* ; once the Pr(TE) is accounted for, the p* between sexes was not different. These results indicate that the observed sex ratio is not a consequence of unequal detectability and sex-specific values of Pr(TE) are important drivers of the observed male-dominated sex ratio. Our modeling approach reveals complex class-specific patterns in Pr(TE) and p* in a mark-recapture data set, and highlights challenges for the population modeling and conservation of white sharks in central California. The model we develop here can be used to estimate rates of temporary emigration and class segregation when two detection methods are used.

How great white sharks nourish their embryos to a large size: evidence of lipid histotrophy in lamnoid shark reproduction.

The great white shark (Carcharodon carcharias) exhibits viviparous and oophagous reproduction. A 4950 mm total length (TL) gravid female accidentally caught by fishermen in the Okinawa Prefecture, Southern Japan carried six embryos (543-624 mm TL, three in each uterus). Both uteri contained copious amounts of yellowish viscous uterine fluid (over 79.2 litres in the left uterus), nutrient eggs and broken egg cases. The embryos had yolk stomachs that had ruptured, the mean volume of which was approximately 197.9 ml. Embryos had about 20 rows of potentially functional teeth in the upper and lower jaws. Periodic acid Schiff (PAS)-positive substances were observed on the surface and in the cytoplasm of the epithelial cells, and large, secretory, OsO4-oxidized lipid droplets of various sizes were distributed on the surface of the villous string epithelium on the uterine wall. Histological examination of the uterine wall showed it to consist of villi, similar to the trophonemata of Dasyatidae rays, suggesting that the large amount of fluid found in the uterus of the white shark was likely required for embryo nutrition. We conclude that: (1) the lipid-rich fluid is secreted from the uterine epithelium only in early gestation before the onset of oophagy, (2) the embryos probably use the abundant uterine fluid and encased nutrient eggs for nutrition at this stage of their development, and (3) the uterine fluid is the major source of embryonic nutrition before oophagy onset. This is the first record of the lipid histotrophy of reproduction among all shark species.

A "Shark Encounter": Delayed Primary Closure and Prophylactic Antibiotic Treatment of a Great White Shark Bite.

BACKGROUND: Shark bites are rare but sensational injuries that are covered in the lay press but are not well described in the medical literature. CASE REPORT: We present the case of a 50-year-old man who sustained two deep puncture wounds to his thigh from a great white shark in the waters surrounding Isla de Guadalupe off the coast of Baja California, Mexico, during a caged SCUBA dive. WHY SHOULD AN EMERGENCY PHYSICIAN BE AWARE OF THIS?: We discuss our strategy of closing the wounds in a delayed primary fashion 24 hours after injury, our antibiotic choices, and the patient's course and review marine pathogens and appropriate antibiotic coverage.

The complete mitochondrial DNA of white shark (Carcharodon carcharias) from Isla Guadalupe, Mexico.

The Isla Guadalupe white shark mitochondrial structure is similar to the one previously reported for a white shark individual from Taiwan with a total length of 16,745 and 16,742 bp respectively; the base composition of the genomes was as follow A (30.60%), T (28.67%), C (26.86%) and G (13.87%), contains 13 protein-coding genes and 24 tRNA genes and the non-coding control region. The tRNA genes range from 70-72 bp. Gene order is the same as in other vertebrates and teleosts.