Genome-wide association study of cassava brown streak disease resistance in cassava germplasm conserved in South America.

Cassava (Manihot esculenta Crantz) is a vital carbohydrate source for over 800 million people globally, yet its production in East Africa is severely affected by cassava brown streak disease (CBSD). Genebanks, through ex-situ conservation, play a pivotal role in preserving crop diversity, providing crucial resources for breeding resilient and disease-resistant crops. This study genotyped 234 South American cassava accessions conserved at the CIAT genebank, previously phenotyped for CBSD resistance by an independent group, to perform a genome-wide association analysis (GWAS) to identify genetic variants associated with CBSD resistance. Our GWAS identified 35 single nucleotide polymorphism (SNP) markers distributed across various chromosomes, associated with disease severity or the presence/absence of viral infection. Markers were annotated within or near genes previously identified with functions related to pathogen recognition and immune response activation. Using the SNP candidates, we screened the world's largest cassava collection for accessions with a higher frequency of favorable genotypes, proposing 35 accessions with potential resistance to CBSD. Our results provide insights into the genetics of CBSD resistance and highlight the importance of genetic resources to equip breeders with the raw materials needed to develop new crop varieties resistant to pests and diseases.

The environment matters: season and female contact affect the behavior of captive Addax nasomaculatus male antelope.

The addax antelope (Addax nasomaculatus) is a species under serious threat of extinction, as it is more abundant in captivity than in the wild. However, little is known about its basic biology. The aims of this study were to determine how locomotor, feeding, aggressive, marking, and sexual behavior of male addax allocated in all-male groups vary with season and with female contact (i.e., biostimulation). The study was conducted in captive conditions, in two groups of adult males: one with no-physical contact with females, aside from visual and olfactory interactions (CF group, n = 4), and another group completely isolated from females (IF group, n = 4). The frequency of behaviors was recorded during the daytime, 4 days per season (total time of observation = 256 h). Lying, standing, walking, aggressive, marking, grazing, and ruminating behaviors as well as water and supplement consumptions varied with season (all p < 0.05). The lying, walking, marking, grazing, and ruminating behaviors were more frequently observed for CF than IF males (all p < 0.05). Also, all behaviors, except for marking, varied with the interaction between the group and seasons (all p < 0.05). Sexual behavior was extremely scarce, so it was not possible to analyze how it varied with seasons and the group. The present study suggests that management program and housing conditions, especially in ex situ breeding plans, should consider the influence of the season and the sociosexual context on the behavior of addax males.

Prioritizing Colombian plant genetic resources for investment in research using indicators about the geographic origin, vulnerability status, economic benefits, and food security importance.

Germplasm banks are the most significant repository for plant genetic resources for food and agriculture (PGRFA) worldwide. Despite their strategic importance, national germplasm banks of tropical megadiverse developing countries such as Colombia have extremely limited funds. Therefore, making strategic decisions about research investment is essential. Here, we designed a data-driven approach to build an index that sorts Colombian PGRFA into three groups: high, medium, or low priority, based on four pillars of information from open-access databases and aligned with the sustainable goals of no poverty and zero hunger: Geographic origin, vulnerability status, economic benefits, and food security importance. We analyzed 345 PGRFA using the index, separating them into two groups, 275 already conserved in the Colombian germplasm bank (BGVCOL group) and 70 not currently conserved in the BGVCOL (NCB group). We used fuzzy logic to classify each PGRFA by each pillar and integrate it to obtain a priority index. Missing data for native crops were frequent in the BGVCOL group. Therefore we adopted an imputation strategy to fill the gaps and calculated the uncertainty. After applying the index, PGRFA with higher priority were 24 (8.72%) from the BGVCOL (i.e., 15 potatoes, three tomatoes, two tree tomatoes, pineapple, cocoa, papaya, and yacon) and one from NCB (i.e., coffee). We concluded that this methodology successfully prioritized PGRFA in Colombia and shows the big holes of knowledge for future research and alternatives to improve this index. The versatility of this methodology could be helpful in other genebanks with budget limitations for research investment. Supplementary Information: The online version contains supplementary material available at 10.1007/s10531-023-02599-7.

Collecting wild potato species (Solanum sect. Petota) in Peru to enhance genetic representation and fill gaps in ex situ collections.

Crop wild relatives (CWRs) are important sources of novel genes, due to their high variability of response to biotic and abiotic stresses, which can be invaluable for crop genetic improvement programs. Recent studies have shown that CWRs are threatened by several factors, including changes in land-use and climate change. A large proportion of CWRs are underrepresented in genebanks, making it necessary to take action to ensure their long-term ex situ conservation. With this aim, 18 targeted collecting trips were conducted during 2017/2018 in the center of origin of potato (Solanum tuberosum L.), targeting 17 diverse ecological regions of Peru. This was the first comprehensive wild potato collection in Peru in at least 20 years and encompassed most of the unique habitats of potato CWRs in the country. A total of 322 wild potato accessions were collected as seed, tubers, and whole plants for ex situ storage and conservation. They belonged to 36 wild potato species including one accession of S. ayacuchense that was not conserved previously in any genebank. Most accessions required regeneration in the greenhouse prior to long-term conservation as seed. The collected accessions help reduce genetic gaps in ex situ conserved germplasm and will allow further research questions on potato genetic improvement and conservation strategies to be addressed. These potato CWRs are available by request for research, training, and breeding purposes under the terms of the International Treaty for Plant Genetic Resources for Food and Agriculture (ITPGRFA) from the Instituto Nacional de Innovacion Agraria (INIA) and the International Potato Center (CIP) in Lima-Peru.

Individual Responses of Captive Amazon Parrots to Routine Handling Can Reflect Their Temperament.

Individual responses to physical restraint and temperament have been assessed in birds of several species; however, there is a paucity of research which investigates both aspects, especially in captive parrots. This lack of studies raises doubts about which temperament traits, if any, are evidenced during handling and if the intensity of responses to restraint is affected by behavioral training programs, a common practice used in ex situ conservation programs. To understand more about the subject, this study aimed to identify the main temperament dimensions of parrots and investigate their relationship with response to physical restraint for blood collection. A secondary aim was to evaluate whether parrots exhibited higher responsiveness to physical restraint after training to improve flight capacity and increase aversion to humans. The main dimensions identified were activity, neophilia, vigilance, and fearfulness. The more fearful parrots in temperament evaluations were more responsive to physical restraint, showing more vocalizations and struggle attempts than the less fearful ones. After training, the parrots showed higher responsiveness to physical restraint. We suggest that physical restraint for routine handling, such as blood collection, could be a feasible option for centers of rehabilitation to use to obtain data on individual behavioral differences in fear responses.

Comparison between concentration and type of intracellular cryoprotectants and the presence of sucrose for cryobanks of somatic cells derived from captive Pumas.

The loss of wild biodiversity has prompted the development of cryobanks, such as those of somatic cells. This is the reality of Pumas, wild felids of ecological importance that suffer from anthropogenic actions, population decline, and subsequent loss of genetic diversity. Somatic cell banks are a strategy for conserving population diversity. We compared different concentrations and types of intracellular cryoprotectants (dimethyl sulfoxide, DMSO; ethylene glycol, EG) associated with 0.2 M of sucrose (SUC) in the cryopreservation of the somatic cells of captive Pumas. The cells were cryopreserved by slow freezing with different solutions containing Dulbecco's modified Eagle's medium with 10% fetal bovine serum and varying concentrations of DMSO and EG in the absence or presence of SUC. The cells were analyzed for morphological characteristics, viability, proliferative activity, metabolic activity, and apoptosis levels. Cells maintained similar fusiform morphology before and after cryopreservation. There was no difference in viability, regardless of the reduction in the concentration and type of intracellular cryoprotectants and sucrose. Similarly, proliferative activity, metabolic activity, and apoptosis levels were not altered by the composition of the cryoprotectants. In summary, we demonstrate that reducing the concentration of DMSO or EG ensures adequate cryopreservation of Puma somatic cells, regardless of the presence of SUC.

Marine planktonic and benthic organisms: an ocean of diversity in the collections of the State of São Paulo / Organismos planctônicos e bentônicos marinhos: um oceano de diversidade nas coleções do Estado de São Paulo

Abstract Brazil is characterized as a megadiverse country, and one of the factors that guarantees the knowledge and preservation of this biodiversity is an improvement in the biological collections. They represent a country's biological, scientific, cultural, and genetic heritage and their preservation depends on a joint effort of researchers, institutions, and public authorities. Marine biological collections of invertebrates and algae of the state of São Paulo represent a high percentage of the national collections, with five biological collections deposited in state institutions. Currently, these collections safeguard the vast majority of the state's marine collection and make up one of the largest in the country. Therefore, the objective of this research is to present information on marine biological collections in the state of São Paulo, their current status, funding, and future perspectives, creating communication opportunities and considering the factors that impact their development. Support from the São Paulo Research Foundation (FAPESP) surpasses state limits, since many studies address broader areas and/or establish diverse partnerships with other institutions from outside São Paulo. This is reflected in the taxonomic and geographic scope of the biological collections in the state, since these host specimens/species from different regions of the country, or even from other countries. However, it is worth mentioning that it is not enough to invest in expeditions to enrich the collections without valuing the training of qualified personnel, both for the collections maintenance and for their taxonomic refinement.

Resumo O Brasil é caracterizado como um país megadiverso e uma das prioridades no conhecimento e conservação dessa biodiversidade é seguramente a melhoria das coleções biológicas. Estas representam patrimônio biológico, científico, cultural e genético de um país, e sua preservação depende de um esforço coletivo de pesquisadores, instituições e do poder público. Com relação às coleções biológicas marinhas de invertebrados e algas, o estado de São Paulo representa uma alta porcentagem do acervo nacional, com cinco principais coleções depositadas em instituições estaduais. Atualmente estas coleções salvaguardam a grande maioria do acervo marinho estadual e compõem um dos maiores do país. Assim sendo, o objetivo desta pesquisa é o de apresentar informações sobre as coleções biológicas marinhas do estado de São Paulo, estado atual, financiamentos e perspectivas futuras, criando oportunidades de comunicação e considerando os fatores que impactam o desenvolvimento das mesmas. O apoio financeiro da Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) às instituições paulistas extravasa os limites do estado, visto que muitas pesquisas abordam áreas mais abrangentes e/ou estabelecem parcerias diversas com outras instituições não paulistas. Isso se reflete inclusive na abrangência taxonômica e geográfica das coleções biológicas do Estado, uma vez que estas mantêm espécimes/espécies de diferentes regiões do país, ou mesmo de outros países. No entanto, vale ressaltar que não basta investir em expedições de coleta para enriquecimento das coleções sem valorizar a formação de pessoal qualificado, tanto para a curadoria dos acervos quanto para o refinamento taxonômico.

Seeing beyond a Dilated Proventriculus: Diagnostic Tools for Proventricular Dilatation Disease in Psittacine Birds.

Proventricular dilatation disease (PDD) is a life-threatening neurological disease caused by parrot bornaviruses (PaBVs) that affects several species worldwide. PDD can be clinically manifested as either a central nervous system condition or a gastrointestinal condition if the nerves and ganglia of the gastrointestinal tract are compromised. We intend to provide a concise review for veterinary clinicians and diagnosticians with focus on the main tools available for PDD diagnosis, including gross and histopathology, immunohistochemistry, molecular techniques and serology. We suggest that a combination of different strategies can increase the success of diagnostic outcomes, as tools such as reverse transcription polymerase chain reaction (RT-PCR) and enzyme-linked immunosorbent assay (ELISA) can be implemented for identification of bornaviral infections in live patients, and gross pathology, histopathology, immunohistochemistry and RT-PCR can provide reliable results for postmortem diagnosis of PDD.

Harnessing Crop Wild Diversity for Climate Change Adaptation.

Warming and drought are reducing global crop production with a potential to substantially worsen global malnutrition. As with the green revolution in the last century, plant genetics may offer concrete opportunities to increase yield and crop adaptability. However, the rate at which the threat is happening requires powering new strategies in order to meet the global food demand. In this review, we highlight major recent 'big data' developments from both empirical and theoretical genomics that may speed up the identification, conservation, and breeding of exotic and elite crop varieties with the potential to feed humans. We first emphasize the major bottlenecks to capture and utilize novel sources of variation in abiotic stress (i.e., heat and drought) tolerance. We argue that adaptation of crop wild relatives to dry environments could be informative on how plant phenotypes may react to a drier climate because natural selection has already tested more options than humans ever will. Because isolated pockets of cryptic diversity may still persist in remote semi-arid regions, we encourage new habitat-based population-guided collections for genebanks. We continue discussing how to systematically study abiotic stress tolerance in these crop collections of wild and landraces using geo-referencing and extensive environmental data. By uncovering the genes that underlie the tolerance adaptive trait, natural variation has the potential to be introgressed into elite cultivars. However, unlocking adaptive genetic variation hidden in related wild species and early landraces remains a major challenge for complex traits that, as abiotic stress tolerance, are polygenic (i.e., regulated by many low-effect genes). Therefore, we finish prospecting modern analytical approaches that will serve to overcome this issue. Concretely, genomic prediction, machine learning, and multi-trait gene editing, all offer innovative alternatives to speed up more accurate pre- and breeding efforts toward the increase in crop adaptability and yield, while matching future global food demands in the face of increased heat and drought. In order for these 'big data' approaches to succeed, we advocate for a trans-disciplinary approach with open-source data and long-term funding. The recent developments and perspectives discussed throughout this review ultimately aim to contribute to increased crop adaptability and yield in the face of heat waves and drought events.

Stress behaviors in captive robust capuchins: Effects of humidity, visitors, management and sex.

Wild robust capuchins (Sapajus spp.) are omnivorous neotropical primates that live in relatively large groups in extensive home and daily ranges with activity budgets dominated by traveling, foraging, and object manipulation, meaning that enclosed spaces can result in significant deprivation. Space restriction, manipulation by caretakers, and the chronic presence of visitors, can disrupt the animals' welfare, altering their normal activities and inducing stress behaviors. We aimed to study the behavioral repertoire, activity budget, and frequency of stress behaviors (stereotypes and self-directed behaviors) between two captive groups of robust capuchins in a public zoo in Foz do Iguaçu, Brazil, to understand how much their behavioral homeostasis has been affected. More specifically, we assessed the effect of environmental variables (temperature, relative air humidity, number of visitors, and food management) and sex on the frequency of stress behaviors. Capuchins showed a high frequency of stress behaviors, which represented around 10% of their activity budget (though the frequencies were unevenly distributed among the individuals), and traveling was positively correlated with stereotypes. We found that high relative air humidity appears to induce more stereotypes, high numbers of visitors appear to increase self-directed and vigilance behaviors and reduce stereotypes, food management can increase both kinds of stress behaviors, and females demonstrated more frequent stress behaviors than males, but individual variation may play a role. Capuchins in the group with a greater space restriction showed more stereotypes, while those in the group with more individuals showed more self-directed behaviors. Our study shows that the stress behaviors performed by the capuchins are complex and it is difficult to determine a single cause, because many traits could be involved. Despite that, this study enlightens us to direct some approaches to help these animals to meet their ecological and social needs, mitigating their stress.

Conservation, animal behaviour, and human-animal relationship in zoos. Why is animal welfare so important?

Although zoos are committed to wildlife conservation and have a long-term positive impact on visitors' attitudes towards wildlife, the question of whether maintaining wild animals in human care is justified remains as animal welfare concerns grow and human understanding of animal intelligence and capacities broadens. Zoos have always been the subject of debate, with conflicts between those who argue they save endangered species and educate visitors, and animal rights activists who believe that conditions of wild animals are inadequate and that zoos should not exist. In this review, we do not discuss the moral side of the issue, but the scientific one. This manuscript aims to show the scope of literature available on the strengths and weaknesses of modern zoos regarding wild animal welfare. We provide information useful to argue why zoos are important in modern society and factors that influence welfare are examined. Some potentially stressful stimuli may diminish animal welfare in zoo animals, while some of the benefits zoos offer to conservation and science include the opportunity to study and learn about different aspects necessary to improve management practices; the possibility of breeding wild animals in zoos has been a key factor in the recovery of species that have improved their conservation status. Animal welfare is an essential part of wildlife conservation, so efforts should be directed to ensure the best possible quality of life and optimum conditions of all zoo animals in our care.(AU)

Conservation, animal behaviour, and human-animal relationship in zoos. Why is animal welfare so important?

Although zoos are committed to wildlife conservation and have a long-term positive impact on visitors' attitudes towards wildlife, the question of whether maintaining wild animals in human care is justified remains as animal welfare concerns grow and human understanding of animal intelligence and capacities broadens. Zoos have always been the subject of debate, with conflicts between those who argue they save endangered species and educate visitors, and animal rights activists who believe that conditions of wild animals are inadequate and that zoos should not exist. In this review, we do not discuss the moral side of the issue, but the scientific one. This manuscript aims to show the scope of literature available on the strengths and weaknesses of modern zoos regarding wild animal welfare. We provide information useful to argue why zoos are important in modern society and factors that influence welfare are examined. Some potentially stressful stimuli may diminish animal welfare in zoo animals, while some of the benefits zoos offer to conservation and science include the opportunity to study and learn about different aspects necessary to improve management practices; the possibility of breeding wild animals in zoos has been a key factor in the recovery of species that have improved their conservation status. Animal welfare is an essential part of wildlife conservation, so efforts should be directed to ensure the best possible quality of life and optimum conditions of all zoo animals in our care.(AU)

Conservation, animal behaviour, and human-animal relationship in zoos. Why is animal welfare so important?

Although zoos are committed to wildlife conservation and have a long-term positive impact on visitors' attitudes towards wildlife, the question of whether maintaining wild animals in human care is justified remains as animal welfare concerns grow and human understanding of animal intelligence and capacities broadens. Zoos have always been the subject of debate, with conflicts between those who argue they save endangered species and educate visitors, and animal rights activists who believe that conditions of wild animals are inadequate and that zoos should not exist. In this review, we do not discuss the moral side of the issue, but the scientific one. This manuscript aims to show the scope of literature available on the strengths and weaknesses of modern zoos regarding wild animal welfare. We provide information useful to argue why zoos are important in modern society and factors that influence welfare are examined. Some potentially stressful stimuli may diminish animal welfare in zoo animals, while some of the benefits zoos offer to conservation and science include the opportunity to study and learn about different aspects necessary to improve management practices; the possibility of breeding wild animals in zoos has been a key factor in the recovery of species that have improved their conservation status. Animal welfare is an essential part of wildlife conservation, so efforts should be directed to ensure the best possible quality of life and optimum conditions of all zoo animals in our care.

Evaluation of the damage caused by in vitro culture and cryopreservation to dermal fibroblasts derived from jaguars: An approach to conservation through biobanks.

Ex-situ conservation strategies such as the formation of somatic cell banks are valuable tools for the conservation of jaguars, whose population has been declining in recent years. Once properly established, these cells can be successfully leveraged for future applications. We aimed to assess the effects of in vitro culture and cryopreservation on the establishment of fibroblasts derived from jaguars. Initially, we identified five dermal fibroblastic lines using morphology and immunophenotyping assays; these lines were then subjected to two experiments. In the first experiment, the viability, metabolism, and proliferative activity of cells at different passages (first, third, and tenth) were evaluated. In the second experiment, the cells were cryopreserved and the levels of reactive oxygen species (ROS), mitochondrial membrane potential (ΔΨm) and apoptosis were evaluated after one, three, and ten passages. Noncryopreserved cells were used as controls. The in vitro culture after first, third, and tenth passages and cryopreservation conditions did not affect the proliferative activity and viability. However, cells cultured until tenth passage and frozen/thawed cells showed reduced metabolism. In addition, cryopreserved cells showed higher levels of intracellular ROS and altered ΔΨm when compared with those of noncryopreserved cells. Finally, frozen/thawed cells cultured after ten passages showed reduced proliferative activity and number of viable cells than did frozen/thawed cells cultured after one and three passages. In summary, we have shown that viable fibroblasts can be established from jaguar skin and that although these cells do not show altered viability and proliferative activity, they do undergo damage during extended culture and cryopreservation.

Seed longevity of maize conserved under germplasm bank conditions for up to 60 years.

BACKGROUND AND AIMS: The long-term conservation of seeds of plant genetic resources is of key importance for food security and preservation of agrobiodiversity. Nevertheless, there is scarce information available about seed longevity of many crops under germplasm bank conditions. METHODS: Through germination experiments as well as the analysis of historical monitoring data, we studied the decline in viability manifested by 1000 maize (Zea mays subsp. mays) seed accessions conserved for an average of 48 years at the CIMMYT germplasm bank, the largest maize seedbank in the world, under two cold storage conditions: an active (-3 °C; intended for seed distribution) and a base conservation chamber (-15 °C; for long-term conservation). KEY RESULTS: Seed lots stored in the active chamber had a significantly lower and more variable seed germination, averaging 81.4 %, as compared with the seed lots conserved in the base chamber, averaging 92.1 %. The average seed viability detected in this study was higher in comparison with that found in other seed longevity studies on maize conserved under similar conditions. A significant difference was detected in seed germination and longevity estimates (e.g. p85 and p50) among accessions. Correlating seed longevity with seed traits and passport data, grain type showed the strongest correlation, with flint varieties being longer lived than floury and dent types. CONCLUSIONS: The more rapid loss of seed viability detected in the active chamber suggests that the seed conservation approach, based on the storage of the same seed accessions in two chambers with different temperatures, might be counterproductive for overall long-term conservation and that base conditions should be applied in both. The significant differences detected in seed longevity among accessions underscores that different viability monitoring and regeneration intervals should be applied to groups of accessions showing different longevity profiles.

Genetic variability, management, and conservation implications of the critically endangered Brazilian pitviper Bothrops insularis.

Information on demographic, genetic, and environmental parameters of wild and captive animal populations has proven to be crucial to conservation programs and strategies. Genetic approaches in conservation programs of Brazilian snakes remain scarce despite their importance for critically endangered species, such as Bothrops insularis, the golden lancehead, which is endemic to Ilha da Queimada Grande, coast of São Paulo State, Brazil. This study aims to (a) characterize the genetic diversity of ex situ and in situ populations of B. insularis using heterologous microsatellites; (b) investigate genetic structure among and within these populations; and (c) provide data for the conservation program of the species. Twelve informative microsatellites obtained from three species of the B. neuwiedi group were used to access genetic diversity indexes of ex situ and in situ populations. Low-to-medium genetic diversity parameters were found. Both populations showed low-albeit significant-values of system of mating inbreeding coefficient, whereas only the in situ population showed a significant value of pedigree inbreeding coefficient. Significant values of genetic differentiation indexes suggest a small differentiation between the two populations. Discriminant analysis of principal components (DAPC) recovered five clusters. No geographic relationship was found in the island, suggesting the occurrence of gene flow. Also, our data allowed the establishment of six preferential breeding couples, aiming to minimize inbreeding and elucidate uncertain parental relationships in the captive population. In a conservation perspective, continuous monitoring of both populations is demanded: it involves the incorporation of new individuals from the island into the captive population to avoid inbreeding and to achieve the recommended allelic similarity between the two populations. At last, we recommend that the genetic data support researches as a base to maintain a viable and healthy captive population, highly genetically similar to the in situ one, which is crucial for considering a reintroduction process into the island.

Fiocruz Biological Collections: strengthening Brazil's biodiversity knowledge and scientific applications opportunities.

Biological collections are central in understanding and preserving life on Earth. In Brazil, the most representative collections are kept by natural history museums, whose primary focus is in invertebrates, vertebrates and vascular plants. Only a few institutions keep repositories in different kingdoms. The Oswaldo Cruz Foundation (Fiocruz), established in 1900, is a strategic public health institution of the Ministry of Health of Brazil. As such, Fiocruz is responsible for a wide range of activities, from basic research to the development and production of vaccines, drugs, reagents and diagnostic kits. Its biological collections were soon established in the expeditions made by naturalists and physicians seeking integrated knowledge of the fauna, flora and tropical diseases. Since then, they have been part of the institutional policy. In a few decades, those collections were already in the forefront of basic and applied research on tropical parasitic and infectious diseases. Currently, they comprise thirty-three repositories representing part of the Brazilian diversity of bacteria, fungi, protozoa, helminths, arthropods, molluscs and plants of medical and environmental importance. Different methods of long-term preservation are applied for the conservation of this wide range of organisms represented by about 6 million specimens. Herein, we describe this range of collections and discuss their complementary role as repositories of groups not represented in other biological collections in Brazil. These valuable biological materials have been used in public health and medical research, as well as for technological development and innovation in Brazil. Parallel to this specific usage, Fiocruz biological collections have played and continue to play a unique and important role in understanding and conserving part of Brazil's biodiversity that is currently under-represented in other biological and natural history collections in Brazil and South America.

Integrating Gut Bacterial Diversity and Captive Husbandry to Optimize Vulture Conservation.

Endangered species recovery plans often include captive breeding and reintroduction, but success remains rare. Critical for effective recovery is an assessment of captivity-induced changes in adaptive traits of reintroduction candidates. The gut microbiota is one such trait and is particularly important for scavengers exposed to carcass microbiomes. We investigated husbandry-associated differences in the gut microbiota of two Old World vulture species using 16S RNA gene amplicon sequencing. Increased abundance of Actinobacteria occurred when vultures were fed quail but not rat or chicken. Conversely, diet preparation (sanitization) had no effect, although bacterial diversity differed significantly between vulture species, likely reflective of evolved feeding ecologies. Whilst the relative lack of influence of a sanitized diet is encouraging, changes in bacterial abundance associated with the type of prey occurred, representing a dietary influence on host-microbiome condition warranting consideration in ex situ species recovery plans. Incorporation of microbiome research in endangered species management, therefore, provides an opportunity to refine conservation practice.

Genetic variability, management, and conservation implications of the critically endangered Brazilian pitviper Bothrops insularis

Information on demographic, genetic, and environmental parameters of wild and captive animal populations has proven to be crucial to conservation programs and strategies. Genetic approaches in conservation programs of Brazilian snakes remain scarce despite their importance for critically endangered species, such as Bothrops insularis, the golden lancehead, which is endemic to Ilha da Queimada Grande, coast of São Paulo State, Brazil. This study aims to (a) characterize the genetic diversity of ex situ and in situ populations of B. insularis using heterologous microsatellites; (b) investigate genetic structure among and within these populations; and (c) provide data for the conservation program of the species. Twelve informative microsatellites obtained from three species of the B. neuwiedi group were used to access genetic diversity indexes of ex situ and in situ populations. Low‐to‐medium genetic diversity parameters were found. Both populations showed low—albeit significant—values of system of mating inbreeding coefficient, whereas only the in situ population showed a significant value of pedigree inbreeding coefficient. Significant values of genetic differentiation indexes suggest a small differentiation between the two populations. Discriminant analysis of principal components (DAPC) recovered five clusters. No geographic relationship was found in the island, suggesting the occurrence of gene flow. Also, our data allowed the establishment of six preferential breeding couples, aiming to minimize inbreeding and elucidate uncertain parental relationships in the captive population. In a conservation perspective, continuous monitoring of both populations is demanded: it involves the incorporation of new individuals from the island into the captive population to avoid inbreeding and to achieve the recommended allelic similarity between the two populations. At last, we recommend that the genetic data support researches as a base to maintain a viable and healthy captive population, highly genetically similar to the in situ one, which is crucial for considering a reintroduction process into the island.