Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 298
Filtrar
1.
J Colloid Interface Sci ; 677(Pt A): 771-780, 2025 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-39121661

RESUMO

Oxygen reduction reaction (ORR) serves as the foundation for various electrochemical energy storage devices. Fe/NC catalysts are expected to replace commercial Pt/C as oxygen electrode catalysts based on the structural tunability at the atomic level, abundant iron ore reserves and excellent activity. Nevertheless, the lack of durability and low active site density impede its advancement. In this work, a durable catalyst, CuFe/NC, for ORR was prepared by modulating the interfacial composition and electronic structure. The introduction of Cu nanoclusters partially eliminates the Fenton effect from Fe and optimizes the electron structure of FeNx, thereby effectively enhancing the long-term durability and activity. The prepared CuFe/NC exhibits a half-wave potential (E1/2) of 0.90 V and superior stability with a decrease in E1/2 of only 20 mV after 10,000 cycles. The assembled alkaline Zinc-Air batteries (ZABs) with CuFe/NC exhibit an open-circuit potential of 1.458 V. At a current density of 5 mA cm-2, the batteries are capable of operation for 600 h with a stable polarization. This CuFe/NC may promote the practical application of novel and renewable electrochemical energy storage devices.

2.
Artigo em Inglês | MEDLINE | ID: mdl-39361498

RESUMO

Flap endonuclease 1 (FEN1) is a structure-specific endonuclease that plays a critical role in the maintenance of genome integrity. In this work, we demonstrate a novel self-powered electrochemical FEN1 biosensor for potential applications in molecular diagnosis. Porous Fe3O4 nanoparticles are first prepared, and single-strand DNA probes are absorbed on the surface of the nanoparticles. Thus, electrochemical species of [Fe(CN)6]3- can be encapsulated inside the porous nanoparticles with the molecular gate of negatively charged DNA. On the other hand, a dumbbell structured DNA probe with 5' flap is designed. FEN1 is able to cleave the flap and activate the CRISPR/Cas system for the digestion of single-stranded DNA around Fe3O4 nanoparticles. As a result, the leakage of [Fe(CN)6]3- contributes to an enhanced electrochemical response, which can be used to reveal the level of FEN1. The high sensitivity of this biosensor is due to the application of porous nanomaterials and Mn2+ accelerated CRISPR/Cas cleavage. It succeeds in detection of biological samples and screening of FEN1 inhibitors. Therefore, this proposed method has potential applications in the early diagnosis of diseases and drug discovery.

3.
Water Res ; 268(Pt A): 122545, 2024 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-39378749

RESUMO

The limited interaction between pollutants, oxidants, and the surface catalytic sites of single atom catalysts (SACs) restricts the water decontamination effectiveness. Confining catalytic sites within porous structures enables the localized enrichment of reactants for optimized reaction kinetics, while the specific regulatory mechanisms remain unclear. Herein, SACs with porous modification significantly improves the utilization of peroxymonosulfate (PMS) and pollutant degradation activity. Confining catalytic sites in porous structure effectively reduces the mass transfer distance between radicals (SO4•- and •OH) and pollutants, thereby improving reaction performance. Pore modulation changes the surface electronic structure, leading to a significant improvement in the electron migration process. The system shows significant potential in effectively oxidizing various common emerging pollutants, and exhibits robust resistance to interference from environmental matrices. Moreover, a quantitative evaluation using life cycle assessment (LCA) indicates that the pFe-SAC/PMS system showcases superior environmental importance and practicality.

4.
Small ; : e2405012, 2024 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-39380378

RESUMO

Precise modulation of the axial coordination microenvironment in single-atom catalysts (SACs) to enhance peroxymonosulfate (PMS) activation represents a promising yet underexplored approach. This study introduces a pyrolysis-free strategy to fabricate SACs with well-defined axial-FeN4+1 coordination structures. By incorporating additional out-of-plane axial nitrogen into well-defined FeN4 active sites within a planar, fully conjugated polyphthalocyanine framework, FeN4+1 configurations are developed that significantly enhance PMS activation. The axial-FeN4+1 catalyst excelled in activating PMS, with a high bisphenol A (BPA) degradation rate of 2.256 min-1, surpassing planar-FeN4/PMS systems by 6.8 times. Theoretical calculations revealed that the axial coordination between N and the Fe sites forms an optimized axial FeN4+1 structure, disrupting the electron distribution symmetry of Fe and optimizing the electron distribution of the Fe 3d orbital (increasing the d-band center from -1.231 to -0.432 eV). Consequently, this led to an enhanced perpendicular adsorption energy of PMS from -1.79 to -1.82 eV and reduced energy barriers for the formation of the key reaction intermediate (O*) that generates 1O2. This study provides new insights into PMS activation through the axial coordinated engineering of well-defined SACs in water purification processes.

5.
Angew Chem Int Ed Engl ; : e202416340, 2024 Sep 27.
Artigo em Inglês | MEDLINE | ID: mdl-39330922

RESUMO

Bismuth vanadate ranks among the most promising photoanodes for photoelectrochemical water splitting. Nonetheless, slow charge separation and transport are key barriers to its photoefficiency. Here, we present a co-doping strategy that significantly improves the charge separation performance of BVO. Under standard one sun illumination, the Fe-N co-doped BVO photoanode (Fe-N-BVO) by N-coordinated Fe precursor reaches a record photocurrent density of 7.01 mA cm-2 at 1.23 V vs RHE after modified a surface co-catalyst. By contrast, much lower photocurrent density is obtained for the N-doped and Fe-doped BVO with separated N and Fe precursors. The detailed characterizations show that the high activity of the Fe-N-BVO is attributed to the enhanced photo-induced bulk charge separation and the accelerated surface water oxidation kinetics. XPS, EXAFS and DFT calculations clearly show that, instead of formation of deep trapping state in the individually doped BVO, the co-doping of Fe-N into BVO generates Fe-based electronic states just below the bottom of conduction band and N-derived states just above the top of valence band. Such modulations in electronic structure enable the efficient trap of the electrons and holes to enhance the separation of photo-induced carriers, but hinder the charge recombination originated from the deep trapping sites.

6.
Chemistry ; : e202402869, 2024 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-39294104

RESUMO

Axial coordination engineering has emerged as an effective strategy to regulate the catalytic performance of metal‒N‒C materials for oxygen reduction reaction (ORR). However, the ORR mechanism and activity changes of their active centers modified by axial ligands are still unclear. Here, a comprehensive investigation of the ORR on a series of FeN4‒L moieties (L stands for an axial ligand) is performed using advanced density functional theory (DFT) calculations. The axial ligand has a substantial effect on the electronic structure and catalytic activity of the FeN4 center. Specially, FeN4‒C6H5 is screened as a promising active moiety with superior ORR activity, as further revealed by constant-potential calculations and kinetic analysis. The enhanced activity is attributed to the weakened *OH adsorption caused by the altered electronic structure. Moreover, microkinetic modeling shows that at pH = 1, FeN4‒C6H5 possesses an impressive theoretical half-wave potential of ~1.01 V, superior to the pristine Fe‒N‒C catalysts (~0.88 V) calculated at the same level. These findings advance the understanding of the ORR mechanism of FeN4‒L and provide guidance for optimizing the ORR performance of single-metal-atom catalysts.

7.
Environ Res ; 263(Pt 1): 120021, 2024 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-39293755

RESUMO

Human activities have significantly altered the biogeochemical cycles of carbon, nitrogen, and sulfur in aquatic ecosystems, leading to ecological problems.This study utilized 16S rRNA gene high-throughput sequencing and excitation-emission matrix parallel factor analysis (EEM-PARAFAC) to evaluate the bacterial community composition and dissolved organic matter structure in the upstream (less impacted) and downstream (severely impacted) sections of the river, with a focus on the interactions between bacterial diversity and dissolved organic matter (DOM) characteristics.Results indicated significant spatial diversity in bacterial communities, with a higher α-diversity upstream compared to the more polluted downstream sections. Environmental parameters, particularly total phosphorus (TP) and dissolved oxygen (DO), were found to significantly influence the distribution and composition of bacterial phyla through redundancy analysis. The pattern of bacterial community assembly has shifted from predominantly deterministic to predominantly stochastic as a result of human activities. The analysis of DOM through EEM-PARAFAC identified three main fluorescent components, reflecting varied sources and interactions with bacterial communities. Upstream, microbial activities predominantly contributed to autochthonous DOM, while downstream, increased inputs of allochthonous DOM from human activities were evident. Furthermore, the study revealed that through the introduction of various organic pollutants and nutrient loads that shift microbial metabolic functions towards increased degradation and transformation of complex organic compounds downstream. Structural equation modeling (SEM) revealed that upstream human activities primarily affected bacterial communities indirectly by altering DOM properties. In contrast, downstream activities had both direct and indirect effects due to higher pollutant loads and more complex environmental conditions. These interactions underline the profound effect of anthropogenic factors on riverine ecosystems and emphasize the importance of managing human impacts to preserve microbial biodiversity and water quality.

8.
Small ; : e2406658, 2024 Sep 20.
Artigo em Inglês | MEDLINE | ID: mdl-39302004

RESUMO

Developing single-atomic electrocatalysts (SACs) with high activity and stability for electrocatalytic water-splitting has been challenging. Moreover, the practical utilization of SACs is still far from meeting the the theoretical prediction. Herein a facile and easy scale-up fabrication method is proposed for designing a novel carbon-iron-nitrogen (C-Fe-N) electrocatalyst with a single atom electron bridge (C-Fe-N SAEBs), which exhibits lower overpotential and impedance than previously reported electrocatalysts. 0.8-C-Fe-N SAEBs exhibits significant activity and excellent stability in the bi-functional decomposition of water. The excellent performance of the C-Fe-N SAEBs electrocatalyst can be attributed to the strong coupling effect at the interface owing to the formation of a single atom C3-Fe-N local coordination microenvironment at the interface, which enhance the exposure of active sites and charge transfer, and reduced the adsorption energy barrier of intermediates. Theoretical calculation and synchrotron radiation analysis are performed to understand the mechanistic insights behind the experimental results. The results reveal that the active C3-Fe-N local coordination microenvironment at the interface not only improves water-splitting behavior but also provides a deeper understanding of local-interface geometry/electronic structure for improving the electrocatalytic activity. Thus, the proposed electrocatalyst, as well as the mechanistic insights into its properties, presents a significant stride toward practical application.

9.
Sci Total Environ ; 952: 175893, 2024 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-39218087

RESUMO

Groundwater pollution has attracted widespread attention as a threat to human health and aquatic ecosystems. However, the mechanisms of pollutant enrichment and migration are unclear, and the spatiotemporal distributions of human health risks are poorly understood, indicating insufficient groundwater management and monitoring. This study assessed groundwater quality, human health risks, and pollutant sources in the Fen River Basin(FRB). Groundwater quality in the FRB is good, with approximately 87 % of groundwater samples rated as "excellent" or "good" in both the dry and rainy seasons. Significant precipitation elevates groundwater levels, making it more susceptible to human activities during the rainy season, slightly deteriorating water quality. Some sampling points in the southern of Taiyuan Basin are severely contaminated by mine drainage, with water quality index values up to 533.80, over twice the limit. Human health risks are mainly from As, F, NO3-, and Cr. Drinking water is the primary pathway of risk. From 2019 to 2020, the average non-carcinogenic risk of As, F, and NO3- increased by approximately 28 %, 170 % and 8.5 %, respectively. The average carcinogenic risk of As and Cr increased by 28 % and 786 %, the overall trend of human health risks is increasing. Source tracing indicates As and F mainly originate from geological factors, while NO3- and Cr are significantly influenced by human activities. Various natural factors, such as hydrogeochemical conditions and aquifer environments, and processes like evaporation, cation exchange, and nitrification/denitrification, affect pollutant concentrations. A multi-tracer approach, integrating hydrochemical and isotopic tracers, was employed to identify the groundwater pollution in the FRB, and the response of groundwater environment to pollutant enrichment. This study provides a scientific basis for the effective control of groundwater pollution at the watershed scale, which is very important in the Loess Plateau.


Assuntos
Monitoramento Ambiental , Água Subterrânea , Rios , Poluentes Químicos da Água , Água Subterrânea/química , Poluentes Químicos da Água/análise , Rios/química , China , Qualidade da Água , Chuva , Humanos
10.
Artigo em Inglês | MEDLINE | ID: mdl-39196616

RESUMO

Two new strains JP48T and JP55 affiliated with the acidobacterial class Terriglobia have been isolated from fen soil sampled in the Fichtelgebirge Mountains near Bayreuth, Germany. Both strains were Gram-stain-negative, non-motile, non-spore-forming rods that divide by binary fission, segregate exopolysaccharide-like material and form capsules. Strains JP48T and JP55 grew at 4-36 °C (optimum at 27 °C), pH 3.6-7.3 (optimum at pH 4.6-5.5) and with NaCl concentrations of 0-3% (optimum at 1.0%; w/v). Strains JP48T and JP55 grew aerobically on a wide range of organic substrates including mono- and oligosaccharides, amino acids and short-chained fatty acids. MK-8 was identified as the major respiratory quinone. The major fatty acids for strains JP48T and JP55 were iso-C15 : 0, C16 : 1 ω7c, C16 : 0 and iso-diabolic acid. Phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, lysophophatidylethanolamine, phosphatidylcholine, unidentified glyco- and glycophospholipids, and unidentified high mass lipid species were the major polar membrane lipids. The G+C content of strains JP48T and JP55 was 57.4 and 57.2 mol%, respectively. The genomes of strains JP48T and JP55 contained nine potential secondary metabolite regions encoding for the compound classes NRPS(-like), T3PKS, terpene, or lanthipeptide class IV. Phylogenetic reconstruction and 16S rRNA gene sequence similarities of 98.3 and 96.9% identified Edaphobacter dinghuensis DHF9T and Edaphobacter lichenicola DSM 104462T as the most closely related type strains to strains JP48T and JP55. Based on their phenotype, phylogeny and chemotaxonomy, we propose the novel species Edaphobacter paludis sp. nov. (type strain JP48T=DSM 109919T=CECT 30269T; additional strain JP55=DSM 109920=CECT 30268) within the class Terriglobia of the phylum Acidobacteriota.


Assuntos
Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano , Ácidos Graxos , Filogenia , RNA Ribossômico 16S , Análise de Sequência de DNA , Microbiologia do Solo , RNA Ribossômico 16S/genética , Ácidos Graxos/química , DNA Bacteriano/genética , Alemanha , Vitamina K 2/análogos & derivados , Quinonas/análise , Acidobacteria/genética , Acidobacteria/classificação , Acidobacteria/isolamento & purificação , Fosfolipídeos/química
11.
Sci Total Environ ; 951: 175738, 2024 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-39182777

RESUMO

Climate change and the associated increased frequency of extreme weather events are likely to alter the emissions of biogenic volatile organic compounds (BVOCs) from boreal peatlands. Hydrologically sensitive Sphagnum mosses are keystone species in boreal peatland ecosystems that are known to emit various BVOCs. However, it is not known how their emissions respond to seasonal droughts. In this study, we quantified the effect of severe drought, and subsequent recovery, on the BVOC emissions from Sphagnum mosses using mesocosms originating from wet open and naturally drier treed boreal fens and bogs. Here we report the emissions of 30 detected BVOCs, of which isoprene was the most abundant with an average flux rate of 5.6 µg m-2 h-1 (range 0-31.9 µg m-2 h-1). The experimental 43-day ecohydrological drought reduced total BVOC and isoprene emissions. In addition, in mesocosms originating from bogs, sesquiterpene emissions decreased with the drought, while the emissions of green leaf volatiles were induced. Sesquiterpene emissions remained low even six weeks after rewetting, indicating a long and limited recovery from the drought. Our results further imply that long-term exposure to deep water tables does not decrease sensitivity of Sphagnum to an extreme drought; we did not detect differences in the emission rates or drought responses between Sphagna originating from wet open and naturally drier treed habitats. Yet, the differences between fen and bog originating Sphagna indicate local variability in the BVOC quality changes following drought, potentially altering the climate feedback of boreal peatland BVOC emissions.


Assuntos
Mudança Climática , Secas , Monitoramento Ambiental , Sphagnopsida , Compostos Orgânicos Voláteis , Compostos Orgânicos Voláteis/análise , Poluentes Atmosféricos/análise , Áreas Alagadas , Taiga , Butadienos , Hemiterpenos
12.
Sci Rep ; 14(1): 19917, 2024 08 27.
Artigo em Inglês | MEDLINE | ID: mdl-39198597

RESUMO

Small extracellular vesicles (sEVs) have the ability to transfer genetic material between cells, but their role in mediating HBV infection and regulating M1 macrophages to promote immune evasion remains unclear. In this study, we utilized PMA + LPS + IFN-γ to induce THP-1 into M1 macrophages. We then extracted sEVs from HepG2.2.15 cell and treated the M1 macrophages with these sEVs. QPCR detection revealed the presence of HBV-DNA in the M1 macrophages. Additionally, RT-qPCR and WB analysis demonstrated a significantly decreased in the expression of TLR4, NLRP3, pro-caspase-1, caspase-1p20, IL-1ß and IL-18 in the M1 macrophages (P < 0.05). Furthermore, RT-qPCR results displayed high expression levels of that miR-146a and FEN-1 in the sEVs derived from HepG2.2.15 cells (P < 0.01). RT -qPCR and WB analysis showed that these sEVs enhanced the expression of FEN-1 or miR-146a in the M1 macrophages through miR-146a or FEN-1 (P < 0.05), while simultaneously reducing the expression of TLR4, NLRP3, caspase-1p20, IL-1ß and IL-18 in the M1 macrophages (P < 0.05). In summary, our findings indicate that sEVs loaded with HBV inhibit the inflammatory function of M1 macrophages and promote immune escape. Additionally, miR-146a and FEN-1 present in the sEVs play a crucial role in this process.


Assuntos
Vesículas Extracelulares , Vírus da Hepatite B , Hepatite B , Evasão da Resposta Imune , Macrófagos , MicroRNAs , Humanos , Vesículas Extracelulares/metabolismo , Vesículas Extracelulares/imunologia , Vírus da Hepatite B/imunologia , Macrófagos/imunologia , Macrófagos/metabolismo , Macrófagos/virologia , MicroRNAs/genética , MicroRNAs/metabolismo , Células Hep G2 , Hepatite B/virologia , Hepatite B/imunologia , Hepatite B/metabolismo , Receptor 4 Toll-Like/metabolismo , Proteína 3 que Contém Domínio de Pirina da Família NLR/metabolismo , Proteína 3 que Contém Domínio de Pirina da Família NLR/genética , Interleucina-18/metabolismo , Células THP-1
13.
Cell Rep ; 43(8): 114522, 2024 Aug 27.
Artigo em Inglês | MEDLINE | ID: mdl-39028621

RESUMO

Persistent DNA-protein crosslinks formed by human topoisomerase IIIα (TOP3A-DPCs) interfere with DNA metabolism and lead to genome damage and cell death. Recently, we demonstrated that such abortive TOP3A-DPCs are ubiquitylated and proteolyzed by Spartan (SPRTN). Here, we identify transient poly(ADP-ribosylation) (PARylation) in addition to ubiquitylation as a signaling mechanism for TOP3A-DPC repair and provide evidence that poly(ADP-ribose) polymerase 1 (PARP1) drives the repair of TOP3A-DPCs by recruiting flap endonuclease 1 (FEN1) to the TOP3A-DPCs. We find that blocking PARylation attenuates the interaction of FEN1 and TOP3A and that TOP3A-DPCs accumulate in cells with compromised PARP1 activity and in FEN1-deficient cells. We also show that PARP1 suppresses TOP3A-DPC ubiquitylation and that inhibiting the ubiquitin-activating enzyme E1 (UBE1) increases TOP3A-DPCs, consistent with ubiquitylation serving as a signaling mechanism for TOP3A-DPC repair mediated by SPRTN and TDP2. We propose that two concerted pathways repair TOP3A-DPCs: PARylation-driven FEN1 excision and ubiquitylation-driven SPRTN-TDP2 excision.


Assuntos
Reparo do DNA , DNA Topoisomerases Tipo I , Endonucleases Flap , Poli(ADP-Ribose) Polimerase-1 , Ubiquitinação , Humanos , Endonucleases Flap/metabolismo , Poli(ADP-Ribose) Polimerase-1/metabolismo , DNA Topoisomerases Tipo I/metabolismo , Poli ADP Ribosilação , DNA/metabolismo
14.
Bioresour Technol ; 406: 131066, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38969240

RESUMO

In constructed wetlands (CWs), carbon source availability profoundly affected microbial metabolic activities engaged in both iron cycle and nitrogen metabolism. However, research gaps existed in understanding the biotransformation of nitrogen and iron in response to fluctuations in organic carbon content under day-night alterations. Results demonstrated increased removal efficiency of NO3--N (95.7 %) and NH4+-N (75.70 %) under light conditions, attributed to increased total organic carbon (TOC). This enhancement promoted the relative abundance of bacteria involved in nitrogen and iron processes, establishing a more stable microbial network. Elevated TOC content also upregulated genes for iron metabolism and glycolysis, facilitating denitrification. Spearman correlation analysis supported the synergistic mechanisms between FeS2-based autotrophic denitrification and TOC-mediated heterotrophic denitrification under light conditions. The significant impact of carbon sources on microbial activities underscores the critical role of organic carbon availability in enhancing nitrogen removal efficiency, providing valuable insights for optimizing FeS2-based CWs design and operation strategies.


Assuntos
Carbono , Desnitrificação , Nitrogênio , Áreas Alagadas , Carbono/metabolismo , Nitrogênio/metabolismo , Bactérias/metabolismo , Compostos Ferrosos/metabolismo , Biodegradação Ambiental , Luz
15.
Sci Total Environ ; 947: 174617, 2024 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-38992375

RESUMO

Peat formation is the key process responsible for carbon sequestration in peatlands. In rich fens, peat is formed by brown mosses and belowground biomass of vascular plants. However, the impact of ecohydrological settings on the contribution of mosses and belowground biomass to peat formation remains an open question. We established seven transects in well-preserved fens in NE Poland along an ecohydrological gradient from mesotrophic sedge-moss communities with stable water levels, to more eutrophic tall sedge communities with higher water level fluctuations. In each transect, we measured the production of brown mosses (using the plug method), aboveground vascular plant biomass (one year after cutting) and belowground biomass (using ingrowth cores). Decomposition rates of all biomass fractions were assessed using litter bags. The first-year surplus of potentially peat-forming fractions, i.e., mosses and belowground biomass, decreased with increasing water level fluctuations and along a vegetation gradient from sedge-moss to tall sedge communities. Moss production was highest in the sedge-moss fen with a stable water level at the ground surface. We did not detect any difference in belowground biomass production across the gradient but found it to be consistently higher in the upper 0-5 cm than in the deeper layers. The decomposition rate also showed no response to the gradient, but differed between biomass types, with aboveground biomass of vascular plants decomposing 2.5 times faster than belowground biomass and mosses. Pattern of peat formation potential along the ecohydrological gradient in rich fen was strongly driven by brown moss production. Sedge-moss fens with a stable water level at the ground surface have the highest peat formation capacity compared to other vegetation types. In the part of the gradient that is poorer in nutrients, vascular plants invest in belowground production, and mosses dominate the aboveground layer.


Assuntos
Biomassa , Solo , Áreas Alagadas , Solo/química , Polônia , Hidrologia , Sequestro de Carbono , Monitoramento Ambiental , Briófitas/crescimento & desenvolvimento
16.
Biomolecules ; 14(7)2024 Jul 09.
Artigo em Inglês | MEDLINE | ID: mdl-39062528

RESUMO

Nucleotide excision repair (NER) is the most universal repair pathway, which removes a wide range of DNA helix-distorting lesions caused by chemical or physical agents. The final steps of this repair process are gap-filling repair synthesis and subsequent ligation. XPA is the central NER scaffolding protein factor and can be involved in post-incision NER stages. Replication machinery is loaded after the first incision of the damaged strand that is performed by the XPF-ERCC1 nuclease forming a damaged 5'-flap processed by the XPG endonuclease. Flap endonuclease I (FEN1) is a critical component of replication machinery and is absolutely indispensable for the maturation of newly synthesized strands. FEN1 also contributes to the long-patch pathway of base excision repair. Here, we use a set of DNA substrates containing a fluorescently labeled 5'-flap and different size gap to analyze possible repair factor-replication factor interactions. Ternary XPA-FEN1-DNA complexes with each tested DNA are detected. Furthermore, we demonstrate XPA-FEN1 complex formation in the absence of DNA due to protein-protein interaction. Functional assays reveal that XPA moderately inhibits FEN1 catalytic activity. Using fluorescently labeled XPA, formation of ternary RPA-XPA-FEN1 complex, where XPA accommodates FEN1 and RPA contacts simultaneously, can be proposed. We discuss possible functional roles of the XPA-FEN1 interaction in NER related DNA resynthesis and/or other DNA metabolic processes where XPA can be involved in the complex with FEN1.


Assuntos
Reparo do DNA , Endonucleases Flap , Proteína de Xeroderma Pigmentoso Grupo A , Endonucleases Flap/metabolismo , Endonucleases Flap/genética , Humanos , Proteína de Xeroderma Pigmentoso Grupo A/metabolismo , Proteína de Xeroderma Pigmentoso Grupo A/genética , DNA/metabolismo , Ligação Proteica , Reparo por Excisão
17.
Front Immunol ; 15: 1415736, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38962012

RESUMO

Background: Neuroblastoma (NB), characterized by its marked heterogeneity, is the most common extracranial solid tumor in children. The status and functionality of mitochondria are crucial in regulating NB cell behavior. While the significance of mitochondria-related genes (MRGs) in NB is still missing in key knowledge. Materials and methods: This study leverages consensus clustering and machine learning algorithms to construct and validate an MRGs-related signature in NB. Single-cell data analysis and experimental validation were employed to characterize the pivotal role of FEN1 within NB cells. Results: MRGs facilitated the classification of NB patients into 2 distinct clusters with considerable differences. The constructed MRGs-related signature and its quantitative indicators, mtScore and mtRisk, effectively characterize the MRGs-related patient clusters. Notably, the MRGs-related signature outperformed MYCN in predicting NB patient prognosis and was adept at representing the tumor microenvironment (TME), tumor cell stemness, and sensitivity to the chemotherapeutic agents Cisplatin, Topotecan, and Irinotecan. FEN1, identified as the most contributory gene within the MRGs-related signature, was found to play a crucial role in the communication between NB cells and the TME, and in the developmental trajectory of NB cells. Experimental validations confirmed FEN1's significant influence on NB cell proliferation, apoptosis, cell cycle, and invasiveness. Conclusion: The MRGs-related signature developed in this study offers a novel predictive tool for assessing NB patient prognosis, immune infiltration, stemness, and chemotherapeutic sensitivity. Our findings unveil the critical function of FEN1 in NB, suggesting its potential as a therapeutic target.


Assuntos
Perfilação da Expressão Gênica , Neuroblastoma , Análise de Célula Única , Transcriptoma , Humanos , Neuroblastoma/genética , Neuroblastoma/patologia , Mitocôndrias/genética , Regulação Neoplásica da Expressão Gênica , Microambiente Tumoral/genética , Linhagem Celular Tumoral , Biomarcadores Tumorais/genética , Prognóstico
18.
Sci Rep ; 14(1): 13084, 2024 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-38849464

RESUMO

The present study employed remote sensing images of the Fen River Basin from 2005, 2010, 2015, and 2020 as the primary data source. The software ENVI, ArcGIS, and Fragstats 4.2 were utilized to measure the landscape pattern index of the Fen River Basin. A collinearity test was conducted to remove any redundant landscape pattern indices. Based on the selected landscape indices, the landscape pattern index values were ascertained as follows. Using the shifting window method, the landscape pattern index of the Fen River Basin was obtained. Second, the habitat quality in the Fen River Basin was assessed using the InVEST model, and the spatial autocorrelation approach was employed to confirm that the habitat quality was spatially autocorrelated. Finally, the spatial impacts of landscape pattern indices on habitat quality were examined using the MGWR model. The results show that (1) the Fen River Basin's overall habitat quality declined between 2005 and 2020; however, the deterioration slowed with time and had a typical "poor in the middle and high around the margins" spatial distribution. The habitat quality of the low-value area continued to increase, the habitat quality of the lower-value area decreased annually, the habitat quality of the middle-value area decreased and then increased, the habitat quality of the higher-quality area tended to increase, decrease, and then increase again, and the habitat quality of the high-quality area decreased annually. (2) The fit of the MGWR model was greater than those of the OLS and traditional GWR models, and it was able to more clearly illustrate the various roles that landscape pattern indices and habitat quality play in one another. (3) Changes in landscape patterns had a major impact on habitat quality; habitat quality was positively impacted by PD and AI, negatively impacted by MESH, and had positive and negative bidirectional effects from CONTAG and AI.

19.
Adv Mater ; 36(31): e2404692, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38752852

RESUMO

Introducing asymmetric elements and breaking the geometric symmetry of traditional metal-N4 site for boosting oxygen reduction reaction (ORR) are meaningful and challenging. Herein, the planar chlorination engineering of Fe-N4 site is first proposed for remarkably improving the ORR activity. The Fe-N4/CNCl catalyst with broken symmetry exhibits a half-wave potential (E1/2) of 0.917 V versus RHE, 49 and 72 mV higher than those of traditional Fe-N4/CN and commercial 20 wt% Pt/C catalysts. The Fe-N4/CNCl catalyst also has excellent stability for 25 000 cycles and good methanol tolerance ability. For Zn-air battery test, the Fe-N4/CNCl catalyst has the maximum power density of 228 mW cm-2 and outstanding stability during 150 h charge-discharge test, as the promising substitute of Pt-based catalysts in energy storage and conversion devices. The density functional theory calculation demonstrates that the adjacent C─Cl bond effectively breaks the symmetry of Fe-N4 site, downward shifts the d-band center of Fe, facilitates the reduction and release of OH*, and remarkably lowers the energy barrier of rate-determining step. This work reveals the enormous potential of planar chlorination engineering for boosting the ORR activity of traditional metal-N4 site by thoroughly breaking their geometric symmetry.

20.
J Colloid Interface Sci ; 671: 643-652, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-38820848

RESUMO

Atomically dispersed iron-nitrogen-carbon (FesbndNsbndC) materials have been considered ideal catalysts for the oxygen reduction. Unfortunately, designing and adjusting the electronic structure of single-atom Fe sites to boost the kinetics and activity still faces grand challenges. In this work, the coordination environment engineering is developed to synthesize the FeSA/NSC catalyst with the tailored N, S co-coordinated Fe atomic site (Fe-N3S site). The structural characterizations and theoretical calculations demonstrate that the incorporation of sulfur can optimize the charge distribution of Fe atoms to weaken the adsorption of OH* and facilitate the desorption of OH*, thus leading to enhanced kinetics process and intrinsic activity. As a result, the S-modified FeSA/NSC exhibits outstanding catalytic activity with the half-wave potentials (E1/2) of 0.915 V and 0.797 V, as well as good stability, in alkaline and acidic electrolytes, respectively. Impressively, the excellent performance of FeSA/NSC is further confirmed in Zn-air batteries (ZABs) and fuel cells, with high peak power densities (146 mW cm-2 and 0.259 W cm-2).

SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA