Precipitation explains Wood Thrush (Hylocichla mustelina) occupancy patterns in Northern Costa Rica / Patrones de ocurrencia del Zorzal del Bosque (Hylocichla mustelina) explicados por la precipitación en el Norte de Costa Rica

Abstract Introduction: The Wood Thrush is a migratory bird that has experienced dramatic declines in its populations in recent decades. This species overwinters in forest fragments with intermediate levels of habitat modification in Central America. However, more studies detailing the use of remnant forests through time are needed to elucidate the threats this species faces in the wintering grounds. Objective: To understand the effects of environmental and forest structure variables on the occupancy of Wood Thrush in Northern Costa Rica. Methods: The study area was the Área de Conservación Guanacaste (ACG), located in Northern Costa Rica, in December 2016, and during the 2018-2019 migration season. We estimated Wood Thrush occupancy and detection probability in four locations of ACG (dry forest, cloud forest, and two locations in the wet forest) using single-season occupancy models. We also estimated Wood Thrush occupancy and probability of persistence in different months in three vegetation types (open area, secondary forest, and old-growth forest) in the wet forest of ACG using a multi-season occupancy model approach. Results: Wood Thrush occupancy was best described by precipitation in the four locations of the ACG; the probability of occupancy increased with precipitation. The average occupancy of Wood Thrushes varied with vegetation type: open area with shrubs and forest edge (0.69 ± 0.09), secondary forest (0.46 ± 0.1), and old-growth forest (0.61 ± 0.1). Wood Thrush probability of persistence responded partially to changes in precipitation, with an unexpected increase in persistence when the rainfall continued decreasing in the season. Conclusion: Wood Thrush occupancy was best predicted by changes in precipitation considering a larger spatial scale. Its probability of persistence partially varied with precipitation. An increase in persistence closer to Spring migration might be explained by the start of the breeding season of resident birds, potentially reducing territorial conflicts and conserving energy before migration. The long-term protection of wet forests in Northern Costa Rica is of paramount importance for the conservation of Wood Thrushes in their wintering grounds.

Resumen Introducción: El Zorzal del Bosque es un ave migratoria que ha experimentado caídas dramáticas en sus poblaciones en las últimas décadas. Esta especie pasa el invierno en fragmentos de bosque con niveles intermedios de modificación de hábitat en Centroamérica. Sin embargo, se necesitan más estudios que detallen el uso de los bosques remanentes a lo largo del tiempo para dilucidar las amenazas que enfrenta esta especie en las zonas de invernada. Objetivo: Comprender los efectos de variables ambientales y de estructura del bosque en la ocurrencia del Zorzal del Bosque en el Norte de Costa Rica. Métodos: El área de estudio fue el Área de Conservación Guanacaste (ACG), ubicada en el Norte de Costa Rica, en diciembre de 2016, y en la temporada migratoria 2018-2019. Estimamos la ocurrencia y la probabilidad de detección del Zorzal del Bosque en cuatro ubicaciones de ACG (bosque seco, bosque nuboso y dos ubicaciones en el bosque húmedo) utilizando modelos de ocurrencia de una sola temporada. También estimamos la ocurrencia del Zorzal del Bosque y la probabilidad de persistencia en diferentes meses en tres tipos de vegetación (área abierta, bosque secundario y bosque primario) en el bosque húmedo de ACG utilizando un enfoque de modelo de ocurrencia multi-estacional. Resultados: La ocurrencia del Zorzal del Bosque estuvo mejor descrita por la precipitación en las cuatro localidades del ACG; la probabilidad de ocurrencia aumentó con las precipitaciones. La ocurrencia media de zorzales varió con el tipo de vegetación: área abierta con arbustos y borde de bosque (0.69 ± 0.09), bosque secundario (0.46 ± 0.1) y bosque primario (0.61 ± 0.1). La probabilidad de persistencia del zorzal respondió parcialmente a cambios en la precipitación, con un aumento inesperado en la persistencia cuando las precipitaciones continuaron disminuyendo en la temporada. Conclusión: La ocurrecia del Zorzal del Bosque varió con la precipitación considerando una escala espacial mayor. Su probabilidad de persistencia varió parcialmente con la precipitación. Un aumento en la persistencia más cerca de la migración de primavera podría explicarse por el inicio de la temporada de reproducción de las aves residentes, lo que podría reducir los conflictos territoriales y conservar energía antes de la migración. La protección a largo plazo de los bosques húmedos en el norte de Costa Rica es de suma importancia para la conservación de los Zorzales del Bosque en sus zonas de invernada.

Distribución espacio-temporal de aves acuáticas de la familia Laridae en un humedal costero sudamericano / Spatio-temporal distribution of aquatic birds of the family Laridae in a South American coastal wetland

Resumen Introducción: El humedal costero Poza de La Arenilla (HCPA), Callao, Perú, es un hábitat importante para el descanso y reposo de aves acuáticas, entre ellas la familia Laridae. Sin embargo, el humedal está sufriendo una degradación crítica debido al desarrollo de actividades antropogénicas. Objetivo: Evaluar la distribución espacio-temporal de las aves acuáticas de la familia Laridae reportadas en HCPA según la temporada del año entre 2013 y 2018. Métodos: Se realizaron muestreos quincenales en 11 zonas delimitadas de HCPA de enero 2013 a diciembre 2018, durante la mañana y la tarde, mediante el método de recuento total. Resultados: Se registraron 12 especies de la familia Laridae. Leucophaeus pipixcan fue la especie de mayor dominancia en la mayoría de las zonas estudiadas y su presencia se destaca en verano y primavera. Las especies con mayor distribución en el humedal son L. pipixcan, Larus dominicanus y Larus belcheri, que se registraron en todas las zonas estudiadas. La mayor abundancia total promedio de especies se registró en verano y la menor en invierno. Se observó un aumento gradual de la abundancia promedio de aves, siendo estos aumentos notables entre primavera y verano de un año a otro. Además, se observó una disminución de la riqueza global de los láridos durante el periodo evaluado. Se observó un patrón de variación estacional del índice de diversidad de Shannon-Weaver (H') similar de un año a otro, debido a que los láridos son aves migratorias, y una tendencia a la disminución del índice con el paso del tiempo. Conclusiones: El HCPA desempeña un papel fundamental para la avifauna acuática de la región. Se ha registrado la presencia de cinco especies migratorias y siete residentes de esta familia, las cuales muestran preferencias espaciales en diferentes zonas del humedal. A pesar de que se observa una disminución en la riqueza global de las especies en el tiempo, la abundancia promedio de aves aumenta.

Abstract Introduction: The coastal wetland Poza de La Arenilla (HCPA), located in Callao (Peru), is an important resting and roosting habitat for aquatic birds, including the family Laridae. However, the wetland is suffering critical degradation due to the development of anthropogenic activities. Objective: To evaluate the spatiotemporal distribution of aquatic birds of the family Laridae reported at HCPA seasonally during the period 2013-2018. Methods: Biweekly sampling was carried out in 11 delimited zones in HCPA between January 2013 and December 2018, during morning and afternoon hours using the total count method. Results: A total of 12 species of Laridae birds were recorded. Leucophaeus pipixcan is the most dominant species in most of the studied zones and its presence is highlighted in summer and spring. The species with the greatest distribution in the wetland was L. pipixcan, Larus dominicanus, and Larus belcheri, which were reported in all the zones studied. The highest average total abundance of species was recorded in summer, while the lowest in winter. A gradual increase in the average abundance of aquatic birds was observed, with these increases being noticeable between the springs and summers from one year to the following. Also, overall richness of the larids was observed to decrease throughout the period evaluated. A similar seasonal variation pattern of the Shannon diversity index (H') was observed from one year to the following, due the fact that Laridae are migratory, and a tendency for the index to decrease with the passage of time. Conclusions: The HCPA plays a key role for the aquatic birds of the region. The presence of five migratory and seven resident species of Laridae has been recorded, which show spatial preferences in different areas of the wetland. Despite a decrease in overall species richness over time, the average abundance of Laridae birds is increasing.

Ticks without borders: Microbial communities of immature Neotropical tick species parasitizing migratory landbirds along northern Gulf of Mexico.

The long-distance, seasonal migrations of birds make them an effective ecological bridge for the movement of ticks. The introduction of exotic tick species to new geographical regions can lead to the emergence of novel tick-borne pathogens or the re-emergence of previously eradicated ones. This study assessed the prevalence of exotic tick species parasitizing resident, short-distance, and long-distance songbirds during spring and autumn at stopover sites in the northern Gulf of Mexico using the mitochondrial 12S rDNA gene. Birds were captured for tick collection from six different sites from late August to early November in both 2018 and 2019. The highest number of ticks were collected in the 2019 season. Most ticks were collected off the Yellow-breasted Chat (Icteria virens) and Common Yellowthroat (Geothlypis trichas), and 54% of the total ticks collected were from Grand Chenier, LA. A high throughput 16S ribosomal RNA sequencing approach was followed to characterize the microbial communities and identify pathogenic microbes in all tick samples. Tick microbial communities, diversity, and community structure were determined using quantitative insight into microbial ecology (QIIME). The sparse correlations for compositional data (SparCC) approach was then used to construct microbial network maps and infer microbial correlations. A total of 421 individual ticks in the genera Amblyomma, Haemaphysalis, and Ixodes were recorded from 28 songbird species, of which Amblyomma and Amblyomma longirostre was the most abundant tick genus and species, respectively. Microbial profiles showed that Proteobacteria was the most abundant phylum. The most abundant bacteria include the pathogenic Rickettsia and endosymbiont Francisella, Candidatus Midichloria, and Spiroplasma. BLAST analysis and phylogenetic reconstruction of the Rickettsia sequences revealed the highest similarities to pathogenic spotted and non-spotted fever groups, including R. buchneri, R. conorii, R. prowazekii, R. bellii, R. australis, R. parkeri, R. monacensis, and R. monteiroi. Permutation multivariate analysis of variance revealed that the relative abundance of Francisella and Rickettsia drives microbial patterns across the tick genera. We also observed a higher percentage of positive correlations in microbe-microbe interactions among members of the microbial communities. Network analysis suggested a negative correlation between a) Francisella and Rickettsia and, b) Francisella and Cutibacterium. Lastly, mapping the distributions of bird species parasitized during spring migrations highlighted geographic hotspots where migratory songbirds could disperse ticks and their pathogens at stopover sites or upon arrival to their breeding grounds, the latter showing means dispersal distances from 421-5003 kilometers. These findings strongly highlight the potential role of migratory birds in the epidemiology of tick-borne pathogens.

Molecular Changes in the Brain of the Wintering Calidris pusilla in the Mangroves of the Amazon River Estuary.

Migrant birds prepare differently to fly north for breeding in the spring and for the flight to lower latitudes during autumn, avoiding the cold and food shortages of the Northern Hemisphere's harsh winter. The molecular events associated with these fundamental stages in the life history of migrants include the differential gene expression in different tissues. Semipalmated sandpipers (Calidris pusilla) are Arctic-breeding shorebirds that migrate to the coast of South America during the non-breeding season. In a previous study, we demonstrated that between the beginning and the end of the wintering period, substantial glial changes and neurogenesis occur in the brain of C. pusilla. These changes follow the epic journey of the autumn migration when a 5-day non-stop transatlantic flight towards the coast of South America and the subsequent preparation for the long-distance flight of the spring migration takes place. Here, we tested the hypothesis that the differential gene expressions observed in the brains of individuals captured in the autumn and spring windows are consistent with the previously described cellular changes. We searched for differential gene expressions in the brain of the semipalmated sandpiper, of recently arrived birds (RA) from the autumnal migration, and that of individuals in the premigratory period (PM) in the spring. All individuals were collected in the tropical coastal of northern Brazil in the mangrove region of the Amazon River estuary. We generated a de novo neurotranscriptome for C. pusilla individuals and compared the gene expressions across libraries. To that end, we mapped an RNA-Seq that reads to the C. pusilla neurotranscriptome in four brain samples of each group and found that the differential gene expressions in newly arrived and premigratory birds were related with neurogenesis, metabolic pathways (ketone body biosynthetic and the catabolic and lipid biosynthetic processes), and glial changes (astrocyte-dopaminergic neuron signaling, astrocyte differentiation, astrocyte cell migration, and astrocyte activation involved in immune response), as well as genes related to the immune response to virus infections (Type I Interferons), inflammatory cytokines (IL-6, IL-1ß, TNF, and NF-κB), NLRP3 inflammasome, anti-inflammatory cytokines (IL-10), and cell death pathways (pyroptosis- and caspase-related changes).

Surveillance of avian malaria and related haemoparasites in common terns (Sterna hirundo) on the Atlantic coast of South America.

Haemosporidia (Apicomplexa, Haemosporida) are protozoa that infect vertebrate blood cells and are transmitted by vectors. Among vertebrates, birds possess the greatest diversity of haemosporidia, historically placed in 3 genera: Haemoproteus, Leucocytozoon and Plasmodium, the causative agent of avian malaria. In South America, existing data on haemosporidia are spatially and temporally dispersed, so increased surveillance is needed to improve the determination and diagnosis of these parasites. During the non-breeding season in 2020 and 2021, 60 common terns (Sterna hirundo) were captured and bled as part of ongoing research on the population health of migratory birds on the Argentinian Atlantic coast. Blood samples and blood smears were obtained. Fifty-eight samples were screened for Plasmodium, Haemoproteus and Leucocytozoon, as well as for Babesia parasites by nested polymerase chain reaction and by microscopic examination of smears. Two positive samples for Plasmodium were found. The cytochrome b lineages detected in the present study are found for the first time, and are close to Plasmodium lineages found in other bird orders. The low prevalence (3.6%) of haemoparasites found in this research was similar to those reported for previous studies on seabirds, including Charadriiformes. Our findings provide new information about the distribution and prevalence of haemosporidian parasites from charadriiforms in the southernmost part of South America, which remains understudied.

Worldwide Dispersion of Coccidia from Migratory Birds: First Report of Eimeria bazi Chauhan et Bhatia, 1970 (Eimeriidae) Outside Asia from Buff-Necked Ibises Theristicus caudatus (Boddaert, 1783) (Threskiornithidae) in South America.

BACKGROUND: Eimeria spp. are coccidian protozoan parasites of domestic and wild animals. Pelecaniform birds are hosts of some Eimeria spp., however, from the family Threskiornithidae only one eimerian species is recorded, Eimeria bazi Chauhan et Bhatia, 1970 which was described from red-naped ibises Pseudibis papillosa (Temminck, 1824) in India. In this study, in turn, this species is morphologically and molecularly identified from buff-necked ibises Theristicus caudatus (Boddaert, 1783) in Brazil. PURPOSE: This study aimed to report E. bazi from buff-necked ibises T. caudatus in southeastern Brazil, revealing the worldwide distribution of this coccidian species, in addition to providing preliminary genotypic identification via sequencing of the mitochondrial cytochrome c oxidase subunit 1 (COI) gene. METHODS: A total of 73 fecal samples were collected from a flock of buff-necked ibises, which remained on the campus of the Federal Rural University of Rio de Janeiro (Universidade Federal Rural do Rio de Janeiro-UFRRJ) from March 2019 to August 2020. Fecal samples were processed by the Sheather's method to recover oocysts. The morphological and morphometrical studies of the oocysts were performed using an optical microscope and graphic editing software. Molecular analysis was performed by sequencing of the COI gene, and the phylogenetic analysis was based in the neighbor-joining and maximum likelihood estimates. RESULTS: Forty-five fecal samples were positive for oocysts identified as E. bazi. This oocysts are ovoidal, 26.2 × 18.9 µm, with smooth to slightly rough wall, c.1.7 µm thick. Micropyle robust and protruding, sometimes with a polar body attached. Oocyst residuum absent, but one or two small polar granules are present. Sporocysts ovoidal to lemon-shaped, 14.2 × 8.7 µm. The Stieda body is knob-like to rounded and sub-Stieda body is absent or vestigial. Sporocyst residuum is composed of granules often membrane-bound. Sporozoites are vermiform, with refractile bodies. This morphology was consistent with the original description of E. bazi from P. papillosa in India. Molecular analysis at the COI gene exhibited low similarity with coccidians sequenced for the same genic region deposited in GenBank, sitting E. bazi separately on the cladogram. CONCLUSIONS: The morphological and molecular studies support the identification of E. bazi from T. caudatus in South America, thus revealing the wide distribution of this eimerian species in the world provided by migratory birds and/or with intercontinental distribution.

Avian haemosporidian (Haemosporida: Plasmodium and Haemoproteus) in the department of Arauca, Colombian Orinoquia region.

Avian haemosporidian from the genera Haemoproteus and Plasmodium are a diverse and widely distributed group of vector-borne blood parasites. These parasites can have negative effects on bird survival by influencing several aspects of their life cycle, causing different clinical signs and even death. Colombia has the widest range of bird richness throughout the globe; however, the associations between haemosporidian parasites and wild birds in different ecosystems remain poorly explored. Within this frame of reference, the objective of the present study was to identify and understand haemosporidian associated with resident and migratory wild birds and their lineages in northeast Orinoquia region, Colombia. Birds were captured in 8 localities and blood samples were collected, identifying the presence of haemosporidian parasites through morphological and molecular analysis of the mitochondrial cytochrome b gene. Blood samples from 233 wild birds (86 species) were analyzed for haemosporidian parasites. Sixteen individuals (6.9%) from 15 resident and migratory species were positive for Haemoproteus or Plasmodium. Fourteen haemosporidian lineages were identified, five of them reported for the first time. These new lineages are reported in four resident birds and one boreal migratory bird (Parkesia noveboracensis). This study is the first developed in the department of Arauca and contributes to the knowledge of haemosporidian lineages and their interaction with wild birds in the Colombian Orinoquia region and South America.

Community modeling reveals the importance of elevation and land cover in shaping migratory bird abundance in the Andes.

The tropical Andes are characterized by extreme topographic and climatic complexity, which has likely contributed to their outstanding current species diversity, composed of many range-restricted species. However, little is known about how the distribution and abundance of highly mobile organisms, like long-distance migratory birds, varies across different land covers, elevations, and climatic conditions within the Andes. We conducted 1,606 distance-sampling point counts across the Colombian Andes, spanning elevations from 253 to 3,708 m, a range of precipitation regimes and representative land covers. We then employed a novel application of a multispecies hierarchical modeling approach to evaluate how elevation, local land cover, aboveground woody biomass, cloud cover, precipitation, and seasonality in precipitation shape the abundance of the migratory land bird community in the Andes. We detected 1,824 individuals of 29 species of migratory land birds, six of which were considered incidental in our study region. We modeled the abundance of the remaining 23 species, while considering observer and time of day effects on detectability. We found that both elevation and land cover had an overriding influence on the abundance of migratory species across the Andes, with strong evidence for a mid-elevation peak in abundance, and species-specific responses to both variables. As a community, migratory birds had the highest mean abundance in shade coffee plantations, secondary forest, and mature forest. Aboveground woody biomass did not affect the abundance of all species as a group, but a few showed strong responses to this variable. Contrary to predictions of a positive correlation between abundance and precipitation, we found no evidence for community-level responses to precipitation, aside for a weak tendency for birds to select areas with intermediate levels of precipitation. This novel use of a multispecies model sheds new light on the mechanisms shaping the winter distribution of migratory birds and highlights the importance of elevation and land cover types over climatic variables in the context of the Colombian Andes.

Perspectives and challenges on isotopic ecology of terrestrial birds in Brazil

Although stable isotopes have been increasingly used in ornithology since 1980 in many places, Brazil has been slow in adopting this methodology, especially when it comes to terrestrial birds. The most common elements in bird ecology studies are carbon, nitrogen, hydrogen, and oxygen stable isotopes, which provide information on diet, trophic interactions, habitat use, migration, geographic patterns, and physiology. It is important that Brazilian ornithologists become aware of the potential of stable isotope analysis in ecological studies, and the shortcomings of this tool. The use of stable isotopes to study bird ecology has great potential in Brazil, since many ecological questions about Neotropical birds can be addressed by it (e.g., resource and habitat use, migratory routes, isotopic niches, anthropogenic impacts, individual specialization). Brazilian museums and other Natural History collections can provide samples to study long-term temporal dynamics in bird ecology. Additionally, the integration of avian tissue sample information into a database may increase the collaboration among researchers and promote sample reuse in a variety of studies. All biomes in Brazil have been under pressure from anthropogenic impacts (e.g., land-use change, habitat loss, fragmentation, intensive agriculture), affecting several taxa, including terrestrial birds. Considering the negative effects of human expansion over natural areas and that stable isotopes provide useful ecological information, ornithologists in Brazil should increase their use of this tool in the future.(AU)

A new mutation in mgrb mediating polymyxin resistance in Klebsiella variicola.

Polymyxin resistance is a public health concern - present in humans, animals and the environment - caused by chromosomal-encoding or plasmid-encoding mechanisms. Chromosomal alterations in MgrB are frequently detected in Klebsiella spp., but not yet reported and characterised in Klebsiella variicola (K. variicola). This study performed microbiological and genomic characterisation of three polymyxin-resistant K. variicola isolates (M14, M15 and M50) recovered from the microbiota of migratory birds in Brazil. The isolates were submitted to SpeI-PFGE, broth microdilution and whole genome sequencing using Illumina MiSeq for analysis of genetic relatedness, sequence typing and detection of antimicrobial-resistance genes. K. variicola isolates belonged to two clones, and susceptibility tests showed resistance only for polymyxins. Sequences of chromosomal two-component systems (PmrAB, PhoPQ, RstAB, CrrAB) and MgrB were evaluated by blastN and blastP against a polymyxin-susceptible K. variicola (A58243), and mutations with biological effect were checked by the PROVEAN tool. K. variicola isolates belonged to two clones, and susceptibility tests showed resistance for polymyxins. In M14 and M15, phoQ deleterious mutations (D90N, I122S and G385S) were identified, while an mgrB variant containing a single deletion (C deletion on position 93) leading to the production of a non-functional protein was detected in M50. mgrB complementation studies showed restoration of polymyxin susceptibility (64 to ≤ 0.25 mg/L) as a wild-type mgrB was inserted into the mgrB-deficient M50. This study confirmed the role of a non-functional mgrB variant in conferring polymyxin resistance, stressing the role of this regulator in K. variicola and drawing attention to novel polymyxin resistance mechanisms emerging in wildlife.

Behavioral aspects of waterbirds / Aspectos comportamentais de aves aquáticas

Estuaries are used by waterbirds as foraging, resting and nesting sites, serving also as shelter for migratory birds. The dynamics of this avifauna in an aquatic environment may be associated with the differences of time of day, tide height, temperature, wind speed and use of the site by different species. This study had the objective of evaluating behavioral aspects of aquatic birds, relating the influence of environmental variables with their activities. Bird counts were performed at the mouth of two important rivers of the state of Santa Catarina, Brazil, during two-hour intervals throughout the day in monthly samplings between June (2015) and May (2016). A total of 44 species were recorded, ten of which were migratory. The most recorded behaviors were foraging and resting. The Kruskal-Wallis analysis indicated no significant difference in behavior between the sampling intervals. The Bray-Curtis similarity test resulted in three groups: 1) - species that foraged most of the time; 2) - species that rested most of the time; and 3) - same time in both activities. The Indicator Species Analysis showed that 17 species were associated with only one microhabitat and 15 species with more than one. The Canonical Correlation Analysis indicated that only tide height, temperature and rainfall variables were correlated with the behaviors performed and only the resting activity was positively correlated with all variables. This may be associated with thermoregulation and the ability of some species to stay in midlitoral at high tide. The results demonstrate that different waterbird species used the studied areas in different ways. Thus, the heterogeneity of microhabitats in an aquatic environment of extreme importance for the coexistence and maintenance of the diversity of waterbirds.(AU)

Estuários são utilizados por aves aquáticas como locais de forrageio, descanso e nidificação, servindo, também, como pontos de parada para aves migratórias. A dinâmica dessa avifauna em um ambiente pode estar associada a diferenças entre horários do dia, altura da maré, temperatura, velocidade do vento e uso do local. Esse trabalho teve o objetivo de avaliar aspectos comportamentais de aves aquáticas, relacionando a influência de variáveis ambientais com suas atividades. Amostragens mensais foram realizadas na foz de dois importantes rios do Estado de Santa Catarina, Brasil, entre junho de 2015 e maio de 2016, em intervalos de duas horas no decorrer do dia. Um total de 44 espécies foram registradas, dez das quais foram migratórias. Os comportamentos mais observados foram forrageio e descanso. A análise de Kruskall-Wallis não indicou diferenças significativas no comportamento entre os horários de amostragem. O teste de similaridade Bray-Curtis resultou em três agrupamentos: 1) - espécies que forragearam na maior parte do tempo; 2) - espécies que descansaram na maior parte do tempo; e 3) - mesma quantidade de tempo em ambas atividades. A Análise de Espécies Indicadoras mostrou que 17 espécies estiveram associadas com apenas um microhabitat e 15 espécies com mais de um. A Análise de Correlação Canônica indicou que apenas as variáveis maré, temperatura e precipitação foram significativamente correlacionadas com os comportamentos demonstrados e apenas a atividade de descanso foi positivamente correlacionada com as todas as variáveis. Isso pode estar associado com a termorregulação e com a habilidade de algumas espécies de permanecer no mediolitoral durante a maré cheia. Os resultados demonstram que diferentes espécies de aves aquáticas utilizaram as áreas estudadas de diferentes maneiras. Assim, a heterogeneidade de microhabitats em um ambiente aquático é de extrema importância para a coexistência e a manutenção da diversidade de aves.(AU)

Behavioral aspects of waterbirds / Aspectos comportamentais de aves aquáticas

Abstract Estuaries are used by waterbirds as foraging, resting and nesting sites, serving also as shelter for migratory birds. The dynamics of this avifauna in an aquatic environment may be associated with the differences of time of day, tide height, temperature, wind speed and use of the site by different species. This study had the objective of evaluating behavioral aspects of aquatic birds, relating the influence of environmental variables with their activities. Bird counts were performed at the mouth of two important rivers of the state of Santa Catarina, Brazil, during two-hour intervals throughout the day in monthly samplings between June (2015) and May (2016). A total of 44 species were recorded, ten of which were migratory. The most recorded behaviors were foraging and resting. The Kruskal-Wallis analysis indicated no significant difference in behavior between the sampling intervals. The Bray-Curtis similarity test resulted in three groups: 1) - species that foraged most of the time; 2) - species that rested most of the time; and 3) - same time in both activities. The Indicator Species Analysis showed that 17 species were associated with only one microhabitat and 15 species with more than one. The Canonical Correlation Analysis indicated that only tide height, temperature and rainfall variables were correlated with the behaviors performed and only the resting activity was positively correlated with all variables. This may be associated with thermoregulation and the ability of some species to stay in midlitoral at high tide. The results demonstrate that different waterbird species used the studied areas in different ways. Thus, the heterogeneity of microhabitats in an aquatic environment of extreme importance for the coexistence and maintenance of the diversity of waterbirds.

Resumo Estuários são utilizados por aves aquáticas como locais de forrageio, descanso e nidificação, servindo, também, como pontos de parada para aves migratórias. A dinâmica dessa avifauna em um ambiente pode estar associada a diferenças entre horários do dia, altura da maré, temperatura, velocidade do vento e uso do local. Esse trabalho teve o objetivo de avaliar aspectos comportamentais de aves aquáticas, relacionando a influência de variáveis ambientais com suas atividades. Amostragens mensais foram realizadas na foz de dois importantes rios do Estado de Santa Catarina, Brasil, entre junho de 2015 e maio de 2016, em intervalos de duas horas no decorrer do dia. Um total de 44 espécies foram registradas, dez das quais foram migratórias. Os comportamentos mais observados foram forrageio e descanso. A análise de Kruskall-Wallis não indicou diferenças significativas no comportamento entre os horários de amostragem. O teste de similaridade Bray-Curtis resultou em três agrupamentos: 1) - espécies que forragearam na maior parte do tempo; 2) - espécies que descansaram na maior parte do tempo; e 3) - mesma quantidade de tempo em ambas atividades. A Análise de Espécies Indicadoras mostrou que 17 espécies estiveram associadas com apenas um microhabitat e 15 espécies com mais de um. A Análise de Correlação Canônica indicou que apenas as variáveis maré, temperatura e precipitação foram significativamente correlacionadas com os comportamentos demonstrados e apenas a atividade de descanso foi positivamente correlacionada com as todas as variáveis. Isso pode estar associado com a termorregulação e com a habilidade de algumas espécies de permanecer no mediolitoral durante a maré cheia. Os resultados demonstram que diferentes espécies de aves aquáticas utilizaram as áreas estudadas de diferentes maneiras. Assim, a heterogeneidade de microhabitats em um ambiente aquático é de extrema importância para a coexistência e a manutenção da diversidade de aves.

Bird habitat preferences drive hemoparasite infection in the Neotropical region.

The role that the environment plays in vector-borne parasite infection is one of the central factors for understanding disease dynamics. We assessed how Neotropical bird foraging strata and habitat preferences determine infection by parasites of the genera Haemoproteus, Plasmodium, Leucocytozoon, and Trypanosoma and filarioids, and tested for phylogenetic signal in these host-parasite associations. We performed extensive searches of the scientific literature and created a database of hemoparasite surveys. We collected data on host body mass, foraging strata, habitat preference, and migratory status, and tested if host ecological traits predict each hemoparasite occurrence and prevalence using a phylogenetic Bayesian framework. Species of Plasmodium tend to infect birds from tropical forests while birds from altitudinal environments are likely to be infected by species of Leucocytozoon. The probability of a bird being infected by filarioid or Trypanosoma is higher in lowland forests. Bird species that occur in anthropic environments and dry habitats of tropical latitudes are more susceptible to infection by species of Haemoproteus. Host foraging strata is also influential and bird species that forage in the mid-high and canopy strata are more prone to infection by species of Haemoproteus and filarioids. We also identified phylogenetic signal for host-parasite associations with the probability of infection of Neotropical birds by any hemoparasite being more similar among more closely related species. We provided a useful framework to identify environments that correlate with hemoparasite infection, which is also helpful for detecting areas with potential suitability for hemoparasite infection due to land conversion and climate change.

Shorebirds' Longer Migratory Distances Are Associated With Larger ADCYAP1 Microsatellites and Greater Morphological Complexity of Hippocampal Astrocytes.

For the epic journey of autumn migration, long-distance migratory birds use innate and learned information and follow strict schedules imposed by genetic and epigenetic mechanisms, the details of which remain largely unknown. In addition, bird migration requires integrated action of different multisensory systems for learning and memory, and the hippocampus appears to be the integration center for this task. In previous studies we found that contrasting long-distance migratory flights differentially affected the morphological complexity of two types of hippocampus astrocytes. Recently, a significant association was found between the latitude of the reproductive site and the size of the ADCYAP1 allele in long distance migratory birds. We tested for correlations between astrocyte morphological complexity, migratory distances, and size of the ADCYAP1 allele in three long-distance migrant species of shorebird and one non-migrant. Significant differences among species were found in the number and morphological complexity of the astrocytes, as well as in the size of the microsatellites of the ADCYAP1 gene. We found significant associations between the size of the ADCYAP1 microsatellites, the migratory distances, and the degree of morphological complexity of the astrocytes. We suggest that associations between astrocyte number and morphological complexity, ADCYAP1 microsatellite size, and migratory behavior may be part of the adaptive response to the migratory process of shorebirds.

Assessment of the potential establishment of Lyme endemic cycles in Mexico.

Although Lyme disease is currently classified as exotic in Mexico, recent studies have suggested that it might be endemic there. We assessed the potential risk for the establishment of Borrelia burgdorferi transmission in Mexico. To identify the potential routes of B. burgdorferi spread, Complex Inference Networks were used initially to identify potential vector-host interactions between hard ticks (Ixodes) and migratory birds in the U.S., and a model for predicting the most important potential bird hosts of hard ticks was then obtained. By using network metrics, keystone-vectors were identified as those species with highest connectivity within and between network communities and had the potential to keep the pathogen circulating with many birds and to be dispersed to several regions. The climatic profile where these interactions occur in the U.S. was characterized and a geographic model for each keystone-vector was built. The accuracy of these models to predict areas where hard ticks have been reported positive for B. burgdorferi allows one to identify areas of greater risk of Lyme disease emergence. These hard tick-bird interactions and their climatic profile were mapped into the winter ranges of birds in Mexico. Thus, those regions in Mexico with the highest potential for becoming endemic areas of Lyme disease through the arrival of hard ticks and birds infected by B. burgdorferi were identified. These areas are candidates for future surveillance programs.

Seabirds as anthropization indicators in two different tropical biotopes: A One Health approach to the issue of antimicrobial resistance genes pollution in oceanic islands.

Antimicrobial resistance is a quintessential One Health issue, among the most serious 21st century global threats to human health. Seabirds may act as sentinels of natural and anthropogenic changes in the marine ecosystem health, including pollution by antimicrobial resistance genes (ARGs). We used real time PCR to identify and quantify 22 plasmid-mediated ARGs in the gastrointestinal microbiome of six wild seabird species, comparing an anthropized (Fernando de Noronha Archipelago - FNA) and a pristine biotope (Rocas Atoll - ROA), Brazil. Of 257 birds, 218 (84.8%) were positive to at least one ARG. ARG classes encoding resistance to tetracyclines (75.1%), quinolones (10.5%) and phenicols (10.5%) were the most prevalent, with tetracyclines significantly greater than the remaining classes (p < 0.05). Genes tet(S) (29.2%), tet(A) (28.8%), and tet(B) (24.9%) were the most commonly found and had a significantly greater prevalence when compared to the remaining ARGs (p < 0.05). The anthropized biotope presented statistically significant higher prevalence of sulfonamide- and quinolone-encoding ARGs in comparison with the pristine (respectively, p = 0.01 and p = 0.03), and higher sulII gene prevalence (p = 0.04), consistent with anthropogenic pressure. Migratory species (only present in ROA) showed statistically significant higher mcr-1 (polymyxins) and blaTEM (betalactam) prevalences (respectively, p = 0.009 and p = 0.02), and mcr-1 percentage load (p = 0.0079) in comparison with non-migratory. To our knowledge, this is the largest ARGs survey based on direct detection and quantification in seabirds worldwide, and the first to evaluate non-synanthropic species in oceanic islands. This is the first detection of mcr-1 in wild free-ranging seabirds in Brazil and in free-ranging migratory non-synanthropic seabirds worldwide. Our findings show the importance of biological and ecological factors, highlighting the role of seabirds as anthropization sentinels and ARGs-pollution environmental indicators (even in a pristine biotope), and their involvement in the One Health epidemiological chain of ARGs.

Rickettsia parkeri strain Atlantic rainforest in ticks (Acari: Ixodidae) of wild birds in Arauca, Orinoquia region of Colombia.

Birds are important hosts for the development of the immature stages of several tick species that are vectors for disease-causing microorganisms in animals and humans. Colombia has the highest number of bird species worldwide; however, there is scarce data on the role of birds in the circulation of ticks and their associated pathogens, such as rickettsiae. The department of Arauca has a high diversity of resident and migratory (boreal and austral) birds and ticks associated with the transmission of Rickettsia. The objective of this research was to identify tick species parasitizing birds and to detect Rickettsia species in these ectoparasites. We conducted samplings in the municipalities of Arauca, Cravo Norte, and Tame between November of 2018 and August of 2019. Birds were captured using mist nets and examined for the presence of tick species. The collected ticks were morphologically and molecularly identified. Furthermore, we detected rickettsiae in ticks by amplifying fragments of the citrate synthase (gltA) and outer membrane protein (ompB) genes. We captured 606 birds belonging to 25 families and 115 species. Tick infestation rate was 3.3% (20/606) in the birds captured and eight new associations between wild birds and ticks are reported for the American continent. We identified four tick species: Amblyomma nodosum, Amblyomma longirostre, Amblyomma mixtum, and Amblyomma sp.. Moreover, we confirmed the presence of Rickettsia parkeri strain Atlantic rainforest in A. nodosum, a medically-relevant rickettsia due to cases of rickettsiosis in the American continent. This finding manifests the importance of wild birds as hosts and dispersal agents of ticks infected with pathogenic rickettsiae, as well as the need to monitor migratory birds in the Orinoquia and other regions of Colombia and America.

Changes in hippocampal astrocyte morphology of Ruddy turnstone (Arenaria interpres) during the wintering period at the mangroves of Amazon River estuary.

Astrocytes are essential for lipid neuronal metabolism in long-distance uninterrupted migratory flights, when glucose is not available as the main source of energy. We previously demonstrated in Calidris pusilla that after uninterrupted 5 days transatlantic flight, astrocytes shrink and reduce its number in the hippocampal formation. Here we shifted our attention to the wintering period and tested the hypothesis that hippocampal astrocyte morphology of A interpres will change as the wintering period progresses towards the premigration window. To that end we used Arenaria interpres, which also crosses the Atlantic Ocean and reaches the mangroves of the Amazon River estuary for wintering. Birds were captured in September/October (closer to the arrival in the coast of Bragança, Para, Brazil for wintering) and in April/May (closer to the departure towards the breeding sites) and had their brains processed for selective GFAP-astrocyte immunolabeling. Three-dimensional reconstructions of the immunostained astrocytes were performed and morphological classification was done based on hierarchical cluster and discriminant analysis of multimodal morphometric features. We found two morphological phenotypes of astrocytes in the newcomers which differentially increased its morphological complexities as wintering period progresses towards the pre-migration window. Taken together, our findings demonstrate that the long-distance non-stop flight and wintering period differentially affected the two astrocytes morphotypes, suggesting distinct physiological roles for these cells. We suggest that morphological changes during the wintering period, may be part of the adaptive plasticity of the local hippocampal circuits of A. interpres in preparation for the long journey back to their breeding sites in the north hemisphere.

Behavioral aspects of waterbirds

Abstract Estuaries are used by waterbirds as foraging, resting and nesting sites, serving also as shelter for migratory birds. The dynamics of this avifauna in an aquatic environment may be associated with the differences of time of day, tide height, temperature, wind speed and use of the site by different species. This study had the objective of evaluating behavioral aspects of aquatic birds, relating the influence of environmental variables with their activities. Bird counts were performed at the mouth of two important rivers of the state of Santa Catarina, Brazil, during two-hour intervals throughout the day in monthly samplings between June (2015) and May (2016). A total of 44 species were recorded, ten of which were migratory. The most recorded behaviors were foraging and resting. The Kruskal-Wallis analysis indicated no significant difference in behavior between the sampling intervals. The Bray-Curtis similarity test resulted in three groups: 1) - species that foraged most of the time; 2) - species that rested most of the time; and 3) - same time in both activities. The Indicator Species Analysis showed that 17 species were associated with only one microhabitat and 15 species with more than one. The Canonical Correlation Analysis indicated that only tide height, temperature and rainfall variables were correlated with the behaviors performed and only the resting activity was positively correlated with all variables. This may be associated with thermoregulation and the ability of some species to stay in midlitoral at high tide. The results demonstrate that different waterbird species used the studied areas in different ways. Thus, the heterogeneity of microhabitats in an aquatic environment of extreme importance for the coexistence and maintenance of the diversity of waterbirds.

Resumo Estuários são utilizados por aves aquáticas como locais de forrageio, descanso e nidificação, servindo, também, como pontos de parada para aves migratórias. A dinâmica dessa avifauna em um ambiente pode estar associada a diferenças entre horários do dia, altura da maré, temperatura, velocidade do vento e uso do local. Esse trabalho teve o objetivo de avaliar aspectos comportamentais de aves aquáticas, relacionando a influência de variáveis ambientais com suas atividades. Amostragens mensais foram realizadas na foz de dois importantes rios do Estado de Santa Catarina, Brasil, entre junho de 2015 e maio de 2016, em intervalos de duas horas no decorrer do dia. Um total de 44 espécies foram registradas, dez das quais foram migratórias. Os comportamentos mais observados foram forrageio e descanso. A análise de Kruskall-Wallis não indicou diferenças significativas no comportamento entre os horários de amostragem. O teste de similaridade Bray-Curtis resultou em três agrupamentos: 1) - espécies que forragearam na maior parte do tempo; 2) - espécies que descansaram na maior parte do tempo; e 3) - mesma quantidade de tempo em ambas atividades. A Análise de Espécies Indicadoras mostrou que 17 espécies estiveram associadas com apenas um microhabitat e 15 espécies com mais de um. A Análise de Correlação Canônica indicou que apenas as variáveis maré, temperatura e precipitação foram significativamente correlacionadas com os comportamentos demonstrados e apenas a atividade de descanso foi positivamente correlacionada com as todas as variáveis. Isso pode estar associado com a termorregulação e com a habilidade de algumas espécies de permanecer no mediolitoral durante a maré cheia. Os resultados demonstram que diferentes espécies de aves aquáticas utilizaram as áreas estudadas de diferentes maneiras. Assim, a heterogeneidade de microhabitats em um ambiente aquático é de extrema importância para a coexistência e a manutenção da diversidade de aves.

Occurrence of endo and hemoparasites in Sporophila caerulescens captured in the eastern region of the state of Acre, Brazil / Ocorrência de endo e hemoparasitos em Sporophila caerulescens capturados na região leste do estado do Acre, Brasil

Wild animals are hosts and reservoirs to many infectious agents, often unknown to the Scientific Community, which leads to serious health implications for natural and domestic environments. We conducted this research with the objective of diagnosing the occurrence of parasites of medical and veterinary interest in “coleirinhos” captured in the eastern region of the state of Acre, Brazil. We captured the specimens in August and September of 2017 using ornithological nets at the margins of Caeté river. We visually inspected the birds to evaluate the ectoparasites. Subsequently, we collected blood through a brachial vein puncture and rested the individuals in a cloth bag for 30 minutes to collect feces, after which we released them. Results of the visual inspection to detect and identify the ectoparasites were negative. Blood samples revealed the protozoan Haemoproteus sp., and the feces revealed cysts of Entamoeba histolytica and E. coli, oocysts of coccidia and eggs of Davaineidae. Coccidia was the most prevalent (69.2%) and abundant (34.15%) parasite reported. Parasites diagnosed in this study can promote the emergence of secondary infections in S. caerulescens individuals or other animals that are contaminated with these etiological agents, since, when migrating through different biomes of South America, other animal species can come into contact with these agents.(AU)

Os animais silvestres são hospedeiros e reservatórios de vários agentes infecciosos, muitas vezes desconhecidos para a comunidade científica, o que leva a sérias implicações na saúde dos ambientes naturais e domésticos. Esta pesquisa teve como objetivo diagnosticar a ocorrência de parasitos de interesse médico e veterinário em “coleirinhos” capturados no leste do Estado do Acre, Brasil. Os espécimes foram capturados nos meses de agosto e setembro de 2017 em redes ornitológicas as margens do Rio Caeté. Para a pesquisa de ectoparasitos, as aves foram inspecionadas visualmente. Após a inspeção, o sangue foi coletado por meio de punção da veia braquial e para coletas das fezes os indivíduos foram postos em descanso em saco de pano por 30min e depois foram soltos na natureza. As fezes, quando presentes, foram coletadas e acondicionadas em recipientes de plástico estéreis. A inspeção visual dos espécimes para detectar e identificar ectoparasitos resultou negativo. Nas amostras sanguíneas foi identificado o protozoário Haemoproteus sp.. Nas fezes foram encontrados os seguintes endoparasitos: cisto de Entamoeba histolytica e E. coli, oocisto de coccídeos e ovos de Davaineidae. Coccideos foram os endoparasitos mais prevalentes (69,2%) e os mais abundantes (34,15%). Os parasitos diagnosticados neste estudo podem propiciar o aparecimento de infecções secundárias nos indivíduos de S. caerulescens ou em outros animais que venham se contaminar com esses agentes etiológicos, pois com a migração dos mesmos, por diferentes biomas da América do Sul outras espécies de animais podem se infectar com esses agentes.(AU)