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1.
J Biol Chem ; 296: 100155, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33273017

RESUMO

Serine active-site ß-lactamases hydrolyze ß-lactam antibiotics through the formation of a covalent acyl-enzyme intermediate followed by deacylation via an activated water molecule. Carbapenem antibiotics are poorly hydrolyzed by most ß-lactamases owing to slow hydrolysis of the acyl-enzyme intermediate. However, the emergence of the KPC-2 carbapenemase has resulted in widespread resistance to these drugs, suggesting it operates more efficiently. Here, we investigated the unusual features of KPC-2 that enable this resistance. We show that KPC-2 has a 20,000-fold increased deacylation rate compared with the common TEM-1 ß-lactamase. Furthermore, kinetic analysis of active site alanine mutants indicates that carbapenem hydrolysis is a concerted effort involving multiple residues. Substitution of Asn170 greatly decreases the deacylation rate, but this residue is conserved in both KPC-2 and non-carbapenemase ß-lactamases, suggesting it promotes carbapenem hydrolysis only in the context of KPC-2. X-ray structure determination of the N170A enzyme in complex with hydrolyzed imipenem suggests Asn170 may prevent the inactivation of the deacylating water by the 6α-hydroxyethyl substituent of carbapenems. In addition, the Thr235 residue, which interacts with the C3 carboxylate of carbapenems, also contributes strongly to the deacylation reaction. In contrast, mutation of the Arg220 and Thr237 residues decreases the acylation rate and, paradoxically, improves binding affinity for carbapenems. Thus, the role of these residues may be ground state destabilization of the enzyme-substrate complex or, alternatively, to ensure proper alignment of the substrate with key catalytic residues to facilitate acylation. These findings suggest modifications of the carbapenem scaffold to avoid hydrolysis by KPC-2 ß-lactamase.


Assuntos
Antibacterianos/química , Escherichia coli/enzimologia , Imipenem/química , Klebsiella pneumoniae/enzimologia , beta-Lactamases/química , Acilação , Ampicilina/química , Ampicilina/metabolismo , Ampicilina/farmacologia , Antibacterianos/metabolismo , Antibacterianos/farmacologia , Sítios de Ligação , Cefalotina/química , Cefalotina/metabolismo , Cefalotina/farmacologia , Clonagem Molecular , Cristalografia por Raios X , Escherichia coli/genética , Expressão Gênica , Vetores Genéticos/química , Vetores Genéticos/metabolismo , Imipenem/metabolismo , Imipenem/farmacologia , Cinética , Klebsiella pneumoniae/genética , Meropeném/química , Meropeném/metabolismo , Meropeném/farmacologia , Modelos Moleculares , Mutação , Ligação Proteica , Conformação Proteica em alfa-Hélice , Conformação Proteica em Folha beta , Domínios e Motivos de Interação entre Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Termodinâmica , Resistência beta-Lactâmica/genética , beta-Lactamases/genética , beta-Lactamases/metabolismo
2.
Artigo em Inglês | MEDLINE | ID: mdl-30782990

RESUMO

In 2016, we identified a new class A carbapenemase, VCC-1, in a nontoxigenic Vibrio cholerae strain that had been isolated from retail shrimp imported into Canada for human consumption. Shortly thereafter, seven additional VCC-1-producing V. cholerae isolates were recovered along the German coastline. These isolates appear to have acquired the VCC-1 gene (blaVCC-1) independently from the Canadian isolate, suggesting that blaVCC-1 is mobile and widely distributed. VCC-1 hydrolyzes penicillins, cephalothin, aztreonam, and carbapenems and, like the broadly disseminated class A carbapenemase KPC-2, is only weakly inhibited by clavulanic acid or tazobactam. Although VCC-1 has yet to be observed in the clinic, its encroachment into aquaculture and other areas with human activity suggests that the enzyme may be emerging as a public health threat. To preemptively address this threat, we examined the structural and functional biology of VCC-1 against the FDA-approved non-ß-lactam-based inhibitor avibactam. We found that avibactam restored the in vitro sensitivity of V. cholerae to meropenem, imipenem, and ertapenem. The acylation efficiency was lower for VCC-1 than for KPC-2 and akin to that of Pseudomonas aeruginosa PAO1 AmpC (k2/Ki = 3.0 × 103 M-1 s-1). The tertiary structure of VCC-1 is similar to that of KPC-2, and they bind avibactam similarly; however, our analyses suggest that VCC-1 may be unable to degrade avibactam, as has been found for KPC-2. Based on our prior genomics-based surveillance, we were able to target VCC-1 for detailed molecular studies to gain early insights that could be used to combat this carbapenemase in the future.


Assuntos
Compostos Azabicíclicos/farmacologia , Proteínas de Bactérias/antagonistas & inibidores , Carbapenêmicos/farmacologia , Vibrio cholerae/efeitos dos fármacos , Inibidores de beta-Lactamases/farmacologia , Aztreonam/metabolismo , Carbapenêmicos/metabolismo , Cefalotina/metabolismo , Humanos , Testes de Sensibilidade Microbiana , Penicilinas/metabolismo , Alimentos Marinhos/microbiologia , Vibrio cholerae/genética , Vibrio cholerae/isolamento & purificação , beta-Lactamases
3.
J Phys Chem B ; 120(35): 9338-46, 2016 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-27501066

RESUMO

A widely applicable free energy contribution analysis (FECA) method based on the quantum mechanical/molecular mechanical (QM/MM) approximation using response kernel approaches has been proposed to investigate the influences of environmental residues and/or atoms in the QM region on the free energy profile. This method can evaluate atomic contributions to the free energy along the reaction path including polarization effects on the QM region within a dramatically reduced computational time. The rate-limiting step in the deactivation of the ß-lactam antibiotic cefalotin (CLS) by ß-lactamase was studied using this method. The experimentally observed activation barrier was successfully reproduced by free energy perturbation calculations along the optimized reaction path that involved activation by the carboxylate moiety in CLS. It was found that the free energy profile in the QM region was slightly higher than the isolated energy and that two residues, Lys67 and Lys315, as well as water molecules deeply influenced the QM atoms associated with the bond alternation reaction in the acyl-enzyme intermediate. These facts suggested that the surrounding residues are favorable for the reactant complex and prevent the intermediate from being too stabilized to proceed to the following deacylation reaction. We have demonstrated that the free energy contribution analysis should be a useful method to investigate enzyme catalysis and to facilitate intelligent molecular design.


Assuntos
Termodinâmica , beta-Lactamases/química , beta-Lactamases/metabolismo , Acilação , Antibacterianos/química , Antibacterianos/metabolismo , Cefalotina/química , Cefalotina/metabolismo , Teoria Quântica
4.
J Phys Chem B ; 120(10): 2681-90, 2016 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-26918257

RESUMO

Understanding the molecular details of antibiotic resistance by the bacterial enzymes ß-lactamases is vital for the development of novel antibiotics and inhibitors. In this spirit, the detailed mechanism of deacylation of the acyl-enzyme complex formed by cephalothin and class C ß-lactamase is investigated here using hybrid quantum-mechanical/molecular-mechanical molecular dynamics methods. The roles of various active-site residues and substrate in the deacylation reaction are elucidated. We identify the base that activates the hydrolyzing water molecule and the residue that protonates the catalytic serine (Ser64). Conformational changes in the active sites and proton transfers that potentiate the efficiency of the deacylation reaction are presented. We have also characterized the oxyanion holes and other H-bonding interactions that stabilize the reaction intermediates. Together with the kinetic and mechanistic details of the acylation reaction, we analyze the complete mechanism and the overall kinetics of the drug hydrolysis. Finally, the apparent rate-determining step in the drug hydrolysis is scrutinized.


Assuntos
Cefalotina/metabolismo , Simulação de Dinâmica Molecular , beta-Lactamases/metabolismo , Acilação , Cefalotina/química , Ligação de Hidrogênio , Hidrólise , Cinética , Conformação Molecular , beta-Lactamases/química
5.
Antimicrob Agents Chemother ; 59(12): 7811-4, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26369975
6.
Microb Drug Resist ; 20(4): 275-80, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24568164

RESUMO

Here we describe the presence of two very similar but unusual variants of AmpC cephalosporinase in each Cronobacter sakazakii and C. malonaticus isolates conferring resistance exclusively to first generation cephalosporins. During a survey on the antibiotic resistance patterns of C. sakazakii and C. malonaticus strains isolated from a milk powder production facility, originally two different phenotypes regarding the susceptibility/resistance for the two beta-lactam antibiotics ampicillin (amp) and cephalothin (ceph) were observed: (i) isolates being susceptible for both antibiotics (amp(S)/ceph(S)), and (ii) strains exhibiting susceptibility to ampicillin but resistance to cephalothin (amp(S)/ceph(R)). The latter phenotype (amp(S)/ceph(R)) was observed in the majority of the environmental strains from the facility. Analysis of whole genome sequences of C. sakazakii revealed a gene putatively coding for an AmpC beta-lactamase. Consequently, the ampC genes from both species and both phenotypes were subjected to a cloning approach. Surprisingly, when expressed in Escherichia coli, all transformants exhibited the amp(S)/ceph(R) phenotype regardless of (i) the phenotypic backgrounds or (ii) the AmpC amino acid sequences of the original strains from which the clones were derived. The novel AmpC beta-lactamases were designated CSA-1 and CSA-2 (from C. sakazakii) and CMA-1 and CMA-2 (from C. malonaticus). The observed variations in the minimum inhibitory concentration (MIC) levels for cephalothin (wt compared to transformants) suggest that this feature is a target of a yet unknown regulatory mechanism present in the natural Cronobacter background but absent in the neutral E. coli host.


Assuntos
Proteínas de Bactérias/genética , Cronobacter sakazakii/genética , Cronobacter/genética , Elementos de DNA Transponíveis , Plasmídeos/química , Resistência beta-Lactâmica/genética , beta-Lactamases/genética , Ampicilina/metabolismo , Ampicilina/uso terapêutico , Animais , Antibacterianos/metabolismo , Antibacterianos/uso terapêutico , Proteínas de Bactérias/metabolismo , Sequência de Bases , Bovinos , Cefalotina/metabolismo , Cefalotina/uso terapêutico , Cronobacter/efeitos dos fármacos , Cronobacter/enzimologia , Cronobacter/isolamento & purificação , Cronobacter sakazakii/efeitos dos fármacos , Cronobacter sakazakii/enzimologia , Cronobacter sakazakii/isolamento & purificação , Escherichia coli/genética , Escherichia coli/metabolismo , Liofilização , Expressão Gênica , Isoenzimas/genética , Isoenzimas/metabolismo , Testes de Sensibilidade Microbiana , Leite/microbiologia , Dados de Sequência Molecular , Pós , Especificidade da Espécie , beta-Lactamases/metabolismo
7.
Sci Total Environ ; 466-467: 547-55, 2014 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-23948499

RESUMO

An understanding of antibiotic hydrolysis rates is important for predicting their environmental persistence. Hydrolysis rates and Arrhenius constants were determined as a function of pH and temperature for three common ß-lactam antibiotics, ampicillin, cefalotin, and cefoxitin. Antibiotic hydrolysis rates at pH4-9 at 25 °C, 50 °C, and 60 °C were quantified, and degradation products were identified. The three antibiotics hydrolyzed under ambient conditions (pH7 and 25 °C); half-lives ranged from 5.3 to 27 d. Base-catalyzed hydrolysis rates were significantly greater than acid-catalyzed and neutral pH hydrolysis rates. Hydrolysis rates increased 2.5- to 3.9-fold for a 10 °C increase in temperature. Based on the degradation product masses found, the likely functional groups that underwent hydrolysis were lactam, ester, carbamate, and amide moieties. Many of the proposed products resulting from the hydrolysis of ampicillin, cefalotin, and cefoxitin likely have reduced antimicrobial activity because many products contained a hydrated lactam ring. The results of this research demonstrate that ß-lactam antibiotics hydrolyze under ambient pH and temperature conditions. Degradation of ß-lactam antibiotics will likely occur over several weeks in most surface waters and over several days in more alkaline systems.


Assuntos
Ampicilina/metabolismo , Antibacterianos/metabolismo , Cefoxitina/metabolismo , Cefalotina/metabolismo , Ampicilina/química , Antibacterianos/química , Cefoxitina/química , Cefalotina/química , Cromatografia Líquida de Alta Pressão , Concentração de Íons de Hidrogênio , Hidrólise , Temperatura
8.
J Am Chem Soc ; 135(39): 14679-90, 2013 Oct 02.
Artigo em Inglês | MEDLINE | ID: mdl-24010547

RESUMO

Bacteria that cause most of the hospital-acquired infections make use of class C ß-lactamase (CBL) among other enzymes to resist a wide spectrum of modern antibiotics and pose a major public health concern. Other than the general features, details of the defensive mechanism by CBL, leading to the hydrolysis of drug molecules, remain a matter of debate, in particular the identification of the general base and role of the active site residues and substrate. In an attempt to unravel the detailed molecular mechanism, we carried out extensive hybrid quantum mechanical/molecular mechanical Car-Parrinello molecular dynamics simulation of the reaction with the aid of the metadynamics technique. On this basis, we report here the mechanism of the formation of the acyl-enzyme complex from the Henry-Michaelis complex formed by ß-lactam antibiotics and CBL. We considered two ß-lactam antibiotics, namely, cephalothin and aztreonam, belonging to two different subfamilies. A general mechanism for the formation of a ß-lactam antibiotic-CBL acyl-enzyme complex is elicited, and the individual roles of the active site residues and substrate are probed. The general base in the acylation step has been identified as Lys67, while Tyr150 aids the protonation of the ß-lactam nitrogen through either the substrate carboxylate group or a water molecule.


Assuntos
Antibacterianos/metabolismo , Aztreonam/metabolismo , Cefalotina/metabolismo , Citrobacter freundii/enzimologia , beta-Lactamases/metabolismo , Antibacterianos/química , Aztreonam/química , Domínio Catalítico , Cefalotina/química , Citrobacter freundii/química , Citrobacter freundii/metabolismo , Modelos Moleculares , beta-Lactamases/química
9.
Proteins ; 81(11): 2045-51, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23737193

RESUMO

EstU1 is a unique family VIII carboxylesterase that displays hydrolytic activity toward the amide bond of clinically used ß-lactam antibiotics as well as the ester bond of p-nitrophenyl esters. EstU1 assumes a ß-lactamase-like modular architecture and contains the residues Ser100, Lys103, and Tyr218, which correspond to the three catalytic residues (Ser64, Lys67, and Tyr150, respectively) of class C ß-lactamases. The structure of the EstU1/cephalothin complex demonstrates that the active site of EstU1 is not ideally tailored to perform an efficient deacylation reaction during the hydrolysis of ß-lactam antibiotics. This result explains the weak ß-lactamase activity of EstU1 compared with class C ß-lactamases. Finally, structural and sequential comparison of EstU1 with other family VIII carboxylesterases elucidates an operative molecular strategy used by family VIII carboxylesterases to extend their substrate spectrum.


Assuntos
Carboxilesterase/química , Carboxilesterase/metabolismo , beta-Lactamases/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Cefalotina/metabolismo , Ligação Proteica , Estrutura Secundária de Proteína , beta-Lactamases/química
10.
J Bacteriol ; 194(15): 4089-96, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22636785

RESUMO

Acinetobacter species show high levels of intrinsic resistance to many antibiotics. The major protein species in the outer membrane of Acinetobacter baumannii does not belong to the high-permeability trimeric porin family, which includes Escherichia coli OmpF/OmpC, and instead is a close homolog of E. coli OmpA and Pseudomonas aeruginosa OprF. We characterized the pore-forming function of this OmpA homolog, OmpA(Ab), by a reconstitution assay. OmpA(Ab) produced very low pore-forming activity, about 70-fold lower than that of OmpF and an activity similar to that of E. coli OmpA and P. aeruginosa OprF. The pore size of the OmpA(Ab) channel was similar to that of OprF, i.e., about 2 nm in diameter. The low permeability of OmpA(Ab) is not due to the inactivation of this protein during purification, because the permeability of the whole A. baumannii outer membrane was also very low. Furthermore, the outer membrane permeability to cephalothin and cephaloridine, measured in intact cells, was about 100-fold lower than that of E. coli K-12. The permeability of cephalothin and cephaloridine in A. baumannii was decreased 2- to 3-fold when the ompA(Ab) gene was deleted. These results show that OmpA(Ab) is the major nonspecific channel in A. baumannii. The low permeability of this porin, together with the presence of constitutive ß-lactamases and multidrug efflux pumps, such as AdeABC and AdeIJK, appears to be essential for the high levels of intrinsic resistance to a number of antibiotics.


Assuntos
Acinetobacter baumannii/genética , Acinetobacter baumannii/metabolismo , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Porinas/genética , Porinas/metabolismo , Antibacterianos/metabolismo , Permeabilidade da Membrana Celular , Cefaloridina/metabolismo , Cefalotina/metabolismo , Deleção de Genes
11.
Protein Sci ; 20(6): 941-58, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21404358

RESUMO

In Pseudomonas aeruginosa, the chromosomally encoded class C cephalosporinase (AmpC ß-lactamase) is often responsible for high-level resistance to ß-lactam antibiotics. Despite years of study of these important ß-lactamases, knowledge regarding how amino acid sequence dictates function of the AmpC Pseudomonas-derived cephalosporinase (PDC) remains scarce. Insights into structure-function relationships are crucial to the design of both ß-lactams and high-affinity inhibitors. In order to understand how PDC recognizes the C3/C4 carboxylate of ß-lactams, we first examined a molecular model of a P. aeruginosa AmpC ß-lactamase, PDC-3, in complex with a boronate inhibitor that possesses a side chain that mimics the thiazolidine/dihydrothiazine ring and the C3/C4 carboxylate characteristic of ß-lactam substrates. We next tested the hypothesis generated by our model, i.e. that more than one amino acid residue is involved in recognition of the C3/C4 ß-lactam carboxylate, and engineered alanine variants at three putative carboxylate binding amino acids. Antimicrobial susceptibility testing showed that the PDC-3 ß-lactamase maintains a high level of activity despite the substitution of C3/C4 ß-lactam carboxylate recognition residues. Enzyme kinetics were determined for a panel of nine penicillin and cephalosporin analog boronates synthesized as active site probes of the PDC-3 enzyme and the Arg349Ala variant. Our examination of the PDC-3 active site revealed that more than one residue could serve to interact with the C3/C4 carboxylate of the ß-lactam. This functional versatility has implications for novel drug design, protein evolution, and resistance profile of this enzyme.


Assuntos
Antibacterianos/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Cefalosporinase/metabolismo , Cefalosporinas/metabolismo , Pseudomonas aeruginosa/enzimologia , Resistência beta-Lactâmica , beta-Lactamases/química , beta-Lactamases/metabolismo , Sequência de Aminoácidos , Antibacterianos/farmacologia , Proteínas de Bactérias/antagonistas & inibidores , Sítios de Ligação , Ácidos Borônicos/farmacologia , Cefalosporinase/química , Cefalosporinas/farmacologia , Cefalotina/metabolismo , Cefalotina/farmacologia , Inibidores Enzimáticos/farmacologia , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Pseudomonas aeruginosa/química , Alinhamento de Sequência , Especificidade por Substrato , Inibidores de beta-Lactamases , beta-Lactamas/metabolismo , beta-Lactamas/farmacologia
12.
Antimicrob Agents Chemother ; 55(3): 1248-55, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21149620

RESUMO

The metallo-ß-lactamase VIM-4, mainly found in Pseudomonas aeruginosa or Acinetobacter baumannii, was produced in Escherichia coli and characterized by biochemical and X-ray techniques. A detailed kinetic study performed in the presence of Zn²+ at concentrations ranging from 0.4 to 100 µM showed that VIM-4 exhibits a kinetic profile similar to the profiles of VIM-2 and VIM-1. However, VIM-4 is more active than VIM-1 against benzylpenicillin, cephalothin, nitrocefin, and imipenem and is less active than VIM-2 against ampicillin and meropenem. The crystal structure of the dizinc form of VIM-4 was solved at 1.9 Å. The sole difference between VIM-4 and VIM-1 is found at residue 228, which is Ser in VIM-1 and Arg in VIM-4. This substitution has a major impact on the VIM-4 catalytic efficiency compared to that of VIM-1. In contrast, the differences between VIM-2 and VIM-4 seem to be due to a different position of the flapping loop and two substitutions in loop 2. Study of the thermal stability and the activity of the holo- and apo-VIM-4 enzymes revealed that Zn²+ ions have a pronounced stabilizing effect on the enzyme and are necessary for preserving the structure.


Assuntos
Antibacterianos/metabolismo , beta-Lactamases/química , beta-Lactamases/metabolismo , Ampicilina/metabolismo , Cefalosporinas/metabolismo , Cefalotina/metabolismo , Cristalografia por Raios X , Escherichia coli/genética , Escherichia coli/metabolismo , Imipenem/metabolismo , Espectroscopia de Ressonância Magnética , Meropeném , Penicilina G/metabolismo , Tienamicinas , beta-Lactamases/genética
13.
J Biol Chem ; 284(48): 33703-12, 2009 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-19812041

RESUMO

TEM-1 beta-lactamase is the most common plasmid-encoded beta-lactamase in Gram-negative bacteria and is a model class A enzyme. The active site of class A beta-lactamases share several conserved residues including Ser(70), Glu(166), and Asn(170) that coordinate a hydrolytic water involved in deacylation. Unlike Ser(70) and Glu(166), the functional significance of residue Asn(170) is not well understood even though it forms hydrogen bonds with both Glu(166) and the hydrolytic water. The goal of this study was to examine the importance of Asn(170) for catalysis and substrate specificity of beta-lactam antibiotic hydrolysis. The codon for position 170 was randomized to create a library containing all 20 possible amino acids. The random library was introduced into Escherichia coli, and functional clones were selected on agar plates containing ampicillin. DNA sequencing of the functional clones revealed that only asparagine (wild type) and glycine at this position are consistent with wild-type function. The determination of kinetic parameters for several substrates revealed that the N170G mutant is very efficient at hydrolyzing substrates that contain a primary amine in the antibiotic R-group that would be close to the Asn(170) side chain in the acyl-intermediate. In addition, the x-ray structure of the N170G enzyme indicated that the position of an active site water important for deacylation is altered compared with the wild-type enzyme. Taken together, the results suggest the N170G TEM-1 enzyme hydrolyzes ampicillin efficiently because of substrate-assisted catalysis where the primary amine of the ampicillin R-group positions the hydrolytic water and allows for efficient deacylation.


Assuntos
Substituição de Aminoácidos , Mutação , beta-Lactamases/genética , beta-Lactamases/metabolismo , Sequência de Aminoácidos , Ampicilina/farmacologia , Antibacterianos/farmacologia , Asparagina/química , Asparagina/genética , Asparagina/metabolismo , Catálise , Domínio Catalítico/genética , Cefalexina/química , Cefalexina/metabolismo , Cefalotina/química , Cefalotina/metabolismo , Cristalografia por Raios X , Escherichia coli/efeitos dos fármacos , Escherichia coli/genética , Escherichia coli/metabolismo , Ácido Glutâmico/química , Ácido Glutâmico/genética , Ácido Glutâmico/metabolismo , Cinética , Testes de Sensibilidade Microbiana , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Molecular , Mutagênese Sítio-Dirigida , Estrutura Terciária de Proteína , Homologia de Sequência de Aminoácidos , Relação Estrutura-Atividade , Especificidade por Substrato , beta-Lactamases/química
14.
Antimicrob Agents Chemother ; 53(12): 5046-54, 2009 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19770275

RESUMO

A Swedish patient of Indian origin traveled to New Delhi, India, and acquired a urinary tract infection caused by a carbapenem-resistant Klebsiella pneumoniae strain that typed to the sequence type 14 complex. The isolate, Klebsiella pneumoniae 05-506, was shown to possess a metallo-beta-lactamase (MBL) but was negative for previously known MBL genes. Gene libraries and amplification of class 1 integrons revealed three resistance-conferring regions; the first contained bla(CMY-4) flanked by ISEcP1 and blc. The second region of 4.8 kb contained a complex class 1 integron with the gene cassettes arr-2, a new erythromycin esterase gene; ereC; aadA1; and cmlA7. An intact ISCR1 element was shown to be downstream from the qac/sul genes. The third region consisted of a new MBL gene, designated bla(NDM-1), flanked on one side by K. pneumoniae DNA and a truncated IS26 element on its other side. The last two regions lie adjacent to one another, and all three regions are found on a 180-kb region that is easily transferable to recipient strains and that confers resistance to all antibiotics except fluoroquinolones and colistin. NDM-1 shares very little identity with other MBLs, with the most similar MBLs being VIM-1/VIM-2, with which it has only 32.4% identity. As well as possessing unique residues near the active site, NDM-1 also has an additional insert between positions 162 and 166 not present in other MBLs. NDM-1 has a molecular mass of 28 kDa, is monomeric, and can hydrolyze all beta-lactams except aztreonam. Compared to VIM-2, NDM-1 displays tighter binding to most cephalosporins, in particular, cefuroxime, cefotaxime, and cephalothin (cefalotin), and also to the penicillins. NDM-1 does not bind to the carbapenems as tightly as IMP-1 or VIM-2 and turns over the carbapenems at a rate similar to that of VIM-2. In addition to K. pneumoniae 05-506, bla(NDM-1) was found on a 140-kb plasmid in an Escherichia coli strain isolated from the patient's feces, inferring the possibility of in vivo conjugation. The broad resistance carried on these plasmids is a further worrying development for India, which already has high levels of antibiotic resistance.


Assuntos
Hidrolases de Éster Carboxílico/química , Hidrolases de Éster Carboxílico/genética , Infecções por Klebsiella/microbiologia , Klebsiella pneumoniae/enzimologia , Klebsiella pneumoniae/genética , beta-Lactamases/química , beta-Lactamases/genética , Sequência de Aminoácidos , Antibacterianos/metabolismo , Antibacterianos/farmacologia , Hidrolases de Éster Carboxílico/classificação , Cefotaxima/metabolismo , Cefotaxima/farmacologia , Cefuroxima/metabolismo , Cefuroxima/farmacologia , Cefalosporinas/metabolismo , Cefalosporinas/farmacologia , Cefalotina/metabolismo , Cefalotina/farmacologia , Farmacorresistência Bacteriana Múltipla/genética , Farmacorresistência Bacteriana Múltipla/fisiologia , Eletroforese em Gel de Campo Pulsado , Humanos , Índia , Cinética , Klebsiella pneumoniae/efeitos dos fármacos , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , Penicilinas/metabolismo , Penicilinas/farmacologia , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , beta-Lactamases/classificação
15.
Antimicrob Agents Chemother ; 53(10): 4320-6, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19651915

RESUMO

The genus Chryseobacterium and other genera belonging to the family Flavobacteriaceae include organisms that can behave as human pathogens and are known to cause different kinds of infections. Several species of Flavobacteriaceae, including Chryseobacterium indologenes, are naturally resistant to beta-lactam antibiotics (including carbapenems), due to the production of a resident metallo-beta-lactamase. Although C. indologenes presently constitutes a limited clinical threat, the incidence of infections caused by this organism is increasing in some settings, where isolates that exhibit multidrug resistance phenotypes (including resistance to aminoglycosides and quinolones) have been detected. Here, we report the identification and characterization of a new IND-type variant from a C. indologenes isolate from Burkina Faso that is resistant to beta-lactams and aminoglycosides. The levels of sequence identity of the new variant to other IND-type metallo-beta-lactamases range between 72 and 90% (for IND-4 and IND-5, respectively). The purified enzyme exhibited N-terminal heterogeneity and a posttranslational modification consisting of the presence of a pyroglutamate residue at the N terminus. IND-6 shows a broad substrate profile, with overall higher turnover rates than IND-5 and higher activities than IND-2 and IND-5 against ceftazidime and cefepime.


Assuntos
Chryseobacterium/enzimologia , beta-Lactamases/química , Adulto , Sequência de Aminoácidos , Antibacterianos/farmacologia , Cefepima , Ceftazidima/química , Ceftazidima/farmacologia , Cefalexina/química , Cefalexina/metabolismo , Cefalosporinas/química , Cefalosporinas/farmacologia , Cefalotina/química , Cefalotina/metabolismo , Chryseobacterium/efeitos dos fármacos , Chryseobacterium/genética , Chryseobacterium/isolamento & purificação , Feminino , Humanos , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , Filogenia , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , beta-Lactamases/classificação , beta-Lactamases/genética , beta-Lactamases/metabolismo
16.
Proc Natl Acad Sci U S A ; 106(14): 5854-8, 2009 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-19307562

RESUMO

Multidrug efflux transporters, especially those that belong to the resistance-nodulation-division (RND) family, often show very broad substrate specificity and play a major role both in the intrinsic antibiotic resistance and, with increased levels of expression, in the elevated resistance of Gram-negative bacteria. However, it has not been possible to determine the kinetic behavior of these important pumps so far. This is partly because these pumps form a tripartite complex traversing both the cytoplasmic and outer membranes, with an outer membrane channel and a periplasmic adaptor protein, and it is uncertain if the behavior of an isolated component protein reflects that of the protein in this multiprotein complex. Here we use intact cells of Escherichia coli containing the intact multiprotein complex AcrB-AcrA-TolC, and measure the kinetic constants for various cephalosporins, by assessing the periplasmic concentration of the drug from their rate of hydrolysis by periplasmic beta-lactamase and the rate of efflux as the difference between the influx rate and the hydrolysis rate. Nitrocefin efflux showed a K(m) of about 5 microM with little sign of cooperativity. For other compounds (cephalothin, cefamandole, and cephaloridine) that showed lower affinity to the pump, however, kinetics showed strong positive cooperativity, which is consistent with the rotating catalysis model of this trimeric pump. For the very hydrophilic cefazolin there was little sign of efflux.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Proteínas de Escherichia coli/metabolismo , Lipoproteínas/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Proteínas Associadas à Resistência a Múltiplos Medicamentos/metabolismo , Complexos Multiproteicos/metabolismo , Cefamandol/metabolismo , Cefazolina/metabolismo , Cefaloridina/metabolismo , Cefalosporinas/metabolismo , Cefalotina/metabolismo , Cinética
17.
J Antimicrob Chemother ; 61(4): 792-7, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18281307

RESUMO

OBJECTIVES: In order to assess whether or not the Arg-276 of CTX-M-type enzymes is equivalent to the Arg-244 of IRT-TEM-derivative enzymes, we replaced the former with six different amino acids, some of them previously described as involved in resistance to beta-lactamase inhibitors in TEM-IRT derivatives. We also investigated the role of Arg276 in cefotaxime hydrolysis. METHODS: By site-directed mutagenesis and by use of the bla(CTX-M-1) gene as template, Arg-276 was replaced with six different amino acids (Trp, His, Cys, Asn, Gly and Ser). MICs of beta-lactams alone and in combination with beta-lactamase inhibitors were established. The seven enzymes (CTX-M-1 wild-type and six derived mutants) were purified by affinity chromatography, and kinetic parameters (k(cat), K(m), k(cat)/K(m)) towards cefalotin and cefotaxime were determined. Clavulanic acid IC(50) values were also assessed with all enzymes. RESULTS: No increase in MICs of beta-lactam/beta-lactamase inhibitor combination was detected with any of the six CTX-M-1-derived mutants, in agreement with the clavulanic acid IC(50) values. The MICs of cefotaxime were clearly lower for the Escherichia coli harbouring the Trp, Cys, Ser and Gly CTX-M-1 mutant enzymes than for CTX-M-1, and these enzymes showed a clearly reduced catalytic efficiency towards cefotaxime. As regards cefalotin, there was a moderate reduction in catalytic efficiency for Cys and His. CONCLUSIONS: Arg-276 in CTX-M-type beta-lactamases is not equivalent to Arg-244 in IRT-type enzymes. Position Arg-276 appears to be important for cefotaxime hydrolysis in CTX-M-type enzymes, although different effects were obtained regarding the replaced amino acid.


Assuntos
Antibacterianos/farmacologia , Farmacorresistência Bacteriana/genética , Inibidores Enzimáticos/farmacologia , Escherichia coli/enzimologia , beta-Lactamases/genética , beta-Lactamases/metabolismo , Substituição de Aminoácidos/genética , Antibacterianos/metabolismo , Cefotaxima/metabolismo , Cefotaxima/farmacologia , Cefalotina/metabolismo , Cefalotina/farmacologia , Cromatografia de Afinidade , Ácido Clavulânico/farmacologia , Escherichia coli/efeitos dos fármacos , Concentração Inibidora 50 , Cinética , Testes de Sensibilidade Microbiana , Modelos Moleculares , Mutagênese Sítio-Dirigida , beta-Lactamases/química , beta-Lactamases/isolamento & purificação
18.
J Chemother ; 19(4): 382-7, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17855181

RESUMO

Seventy-six (75.2%) of 101 Escherichia coli isolates, collected over a 2-month period in 2002 at the Children's Hospital of Tunis (Tunisia), were resistant to at least one beta-lactam. They produced beta-lactamases which were further characterized by spectrophotometry, isoelectric focusing (IEF) and PCR. Seventy-five isolates had a pI 5.4 beta-lactamase and one isolate expressed a pI 5.6 beta-lactamase. These beta-lactamases were active against penicillins and cephalothin. Nineteen of 76 isolates were resistant to ticarcillin-clavulanic acid combination. The bla(TEM) gene was detected in 71 isolates, all expressed a pI 5.4 beta-lactamase that was assumed to be TEM-1 or inhibitor-resistant TEM (IRT). Thirty-eight of 76 isolates showed one weak band on IEF with pIs ranging from 8.2 to >9, suggesting low level expression of the chromosomal AmpC beta-lactamase. Five of 76 isolates produced extended-spectrum beta-lactamases (ESBLs), with a basic pI of 7.9 or 8.7, active on penicillins, extended-spectrum cephalosporins, but not on cefoxitin. bla(SHV) genes were detected in three isolates producing pI 7.9 ESBLs but not in two isolates expressing pI 8.7 ESBLs. These latter showed strong cefotaxime-hydrolyzing activities. Hence, they might be CTX-M-type ESBLs.


Assuntos
Antibacterianos/farmacologia , Proteínas de Bactérias/química , Escherichia coli/efeitos dos fármacos , Resistência beta-Lactâmica , beta-Lactamases/química , beta-Lactamas/farmacologia , Antibacterianos/metabolismo , Proteínas de Bactérias/metabolismo , Cefalotina/metabolismo , Cefalotina/farmacologia , Criança , Escherichia coli/enzimologia , Infecções por Escherichia coli/microbiologia , Humanos , Concentração de Íons de Hidrogênio , Testes de Sensibilidade Microbiana , Penicilinas/metabolismo , Penicilinas/farmacologia , Tunísia , beta-Lactamases/metabolismo , beta-Lactamas/metabolismo
19.
Artigo em Inglês | MEDLINE | ID: mdl-17701482

RESUMO

The development of beta-lactam antibiotics has been a continuous battle of the design of new compounds to withstand inactivation by the ever-increasing diversity of beta-lactamases. Semisynthetic cephalosporins like cephalothin were synthesized from 7-amino-cephalosporanic acid (7-ACA), and thiophene-2-acetic acid using cephalosporin-C acylase enzyme was studied. The production of cephalosporin-C acylase by Pseudomonas diminuta was used and the growth kinetics studied. The optimum condition of enzyme activity was determined by using response surface methodology. A 2(3) full-factorial composite design was employed for experimental design and the result analyzed. The pH value and temperature for optimum activity were 6.5 and 32 degrees C, respectively. The structural analog compound similar to the side-chain of semisynthetic cephalosporins, e.g., thiophene-2-acetic acid, was added. HPLC data analysis indicate that the concentration of cephalothin was 1.6 mg/mL.


Assuntos
Biotecnologia/métodos , Cefalosporinas/síntese química , Cefalosporinas/metabolismo , Cefalotina/síntese química , Cefalotina/metabolismo , Reatores Biológicos , Ativação Enzimática , Cinética , Modelos Biológicos , Penicilina Amidase/metabolismo , Pseudomonas/enzimologia , Pseudomonas/crescimento & desenvolvimento , Análise de Regressão
20.
Appl Microbiol Biotechnol ; 65(3): 281-6, 2004 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-15257420

RESUMO

A beta-lactamase-free penicillin amidase from Alcaligenes sp. active against various beta-lactams was purified to homogeneity. The enzyme can hydrolyze penicillin G to 6-amino penicillanic acid (6-APA) and furnish penicillin G from 6-APA and phenyl acetic acid by condensation. The penicillin amidase is a heterodimer of subunit masses of 63 kDa and 22 kDa, respectively. Its isoelectric point is at pH 8.5. Cephalothin was found to be the best substrate. This is a novel type II penicillin amidase which shares the properties of both type II and type III enzymes. It is thermostable and, unlike penicillin amidase from A. faecalis, its stability remains unperturbed even in presence of reductant. An inhibition study by 2-hydroxy-5-nitro benzylbromide indicated the involvement of tryptophan in catalysis by the enzyme.


Assuntos
Alcaligenes/enzimologia , Penicilina Amidase , Análise de Sequência de Proteína , beta-Lactamases/metabolismo , Alcaligenes/crescimento & desenvolvimento , Sequência de Aminoácidos , Antibacterianos/metabolismo , Cefalotina/metabolismo , Dicroísmo Circular , Dados de Sequência Molecular , Penicilina Amidase/química , Penicilina Amidase/isolamento & purificação , Penicilina Amidase/metabolismo , Especificidade por Substrato , beta-Lactamas/metabolismo
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