Phylogenomic analysis and dynamic evolution of chloroplast genomes of Clematis nannophylla.

Clematis nannophylla is a perennial shrub of Clematis with ecological, ornamental, and medicinal value, distributed in the arid and semi-arid areas of northwest China. This study successfully determined the chloroplast (cp) genome of C. nannophylla, reconstructing a phylogenetic tree of Clematis. This cp genome is 159,801 bp in length and has a typical tetrad structure, including a large single-copy, a small single-copy, and a pair of reverse repeats (IRa and IRb). It contains 133 unique genes, including 89 protein-coding, 36 tRNA, and 8 rRNA genes. Additionally, 66 simple repeat sequences, 50 dispersed repeats, and 24 tandem repeats were found; many of the dispersed and tandem repeats were between 20-30 bp and 10-20 bp, respectively, and the abundant repeats were located in the large single copy region. The cp genome was relatively conserved, especially in the IR region, where no inversion or rearrangement was observed, further revealing that the coding regions were more conserved than the noncoding regions. Phylogenetic analysis showed that C. nannophylla is more closely related to C. fruticosa and C. songorica. Our analysis provides reference data for molecular marker development, phylogenetic analysis, population studies, and cp genome processes to better utilise C. nannophylla.

Insights into heat response mechanisms in Clematis species: physiological analysis, expression profiles and function verification.

KEY MESSAGE: Our results provide insights into heat response mechanisms among Clematis species. Overexpressing CvHSFA2 enhanced the heat resistance of yeast and silencing NbHSFA2 reduced the heat resistance of tobacco. Clematis species are commonly grown in western and Japanese gardens. Heat stress can inhibit many physiological processes mediating plant growth and development. The mechanism regulating responses to heat has been well characterized in Arabidopsis thaliana and some crops, but not in horticultural plants, including Clematis species. In this study, we found that Clematis alpina 'Stolwijk Gold' was heat-sensitive whereas Clematis vitalba and Clematis viticella 'Polish Spirit' were heat-tolerant based on the physiological analyses in heat stress. Transcriptomic profiling identified a set of heat tolerance-related genes (HTGs). Consistent with the observed phenotype in heat stress, 41.43% of the differentially expressed HTGs between heat treatment and control were down-regulated in heat-sensitive cultivar Stolwijk Gold, but only 9.80% and 20.79% of the differentially expressed HTGs in heat resistant C. vitalba and Polish Spirit, respectively. Co-expression network, protein-protein interaction network and phylogenetic analysis revealed that the genes encoding heat shock transcription factors (HSFs) and heat shock proteins (HSPs) may played an essential role in Clematis resistance to heat stress. Two clades of heat-induced CvHSFs were further identified by phylogenetic tree, motif analysis and qRT-PCR. Ultimately, we proposed that overexpressing CvHSFA2-2 could endow yeast with high temperature resistance and silencing its homologous gene NbHSFA2 reduced the heat resistance of tobacco. This study provides first insights into the diversity of the heat response mechanisms among Clematis species.

Anther and ovule development of Clematis serratifolia (Ranunculaceae)-with new formation types in megaspore and nucellus.

Morphological indices of vegetative organs or reproductive organs, which are often used to analyze the evolution and classify Clematis, indicate that Clematis serratifolia and C. glauca could be related members at similar evolutionary levels. However, this assumption differs with phylogenetic studies based on genetics. Embryonic characteristics, which are more stable, are commonly used to estimate the phylogeny and evolution of angiosperms. We studied the microsporogenesis, microgametogenesis, megasporogenesis and macrogametogenesis development of C. serratifolia, and compared the early embryological characteristics among C. serratifolia, C. serratifolia and other Clematis species reported to provide a reference for the taxonomy of the genus Clematis. Our results showed that C. serratifolia and C. glauca differ in megaspore formation and nucellus types suggesting that they have originated from different ancestors. The differences among Clematis were mainly found in the type of the anther wall development, tapetum, pollen grains, megaspore formation and nucellus types.

[Comparative study on identification of Clematidis Radix et Rhizoma from different origins based on microstructure and NIRS method].

Microscopic identification and NIRS methods were applied to identify Clematidis Radix et Rhizoma of two different origins. The results showed that both methods could identify the samples. NIRS could identify the two samples nondestructively, and provides a basis for establishment of a standard herbs radix clematidis NIRS fingerprint in the future.

Chemodiversity of saponins and their taxonomic importance in Clematis genus (Ranunculaceae).

Distribution patterns of chemical compounds in plants have been used for biosystematic and phylogenetic studies. Saponin profile of twelve major taxa of Clematis genus, belonging to sections, Rectae, Clematis, Meclatis, Tubulosae and Viorna were analyzed by HPLC coupled with diode array detector and ESI-MS. The chemodiversity profile of saponins has unambiguously delimited the taxa of Clematis at subgenus, section and subsection level. The distribution of saponins in Clematis genus provides useful taxonomic markers and results are presented in phenograms. The compound Huzhangoside D was common and the most abundant in analyzed species of the genus. The morphological analysis was also conducted of the same taxa and presented as cluster tree. The distribution and chemotaxonomic importance of saponins profile within the genus is discussed.