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1.
J Agric Food Chem ; 68(35): 9475-9487, 2020 Sep 02.
Artigo em Inglês | MEDLINE | ID: mdl-32806108

RESUMO

n-Butyl acetate is an important food additive commonly produced via concentrated sulfuric acid catalysis or immobilized lipase catalysis of butanol and acetic acid. Compared with chemical methods, an enzymatic approach is more environmentally friendly; however, it incurs a higher cost due to lipase production. In vivo biosynthesis via metabolic engineering offers an alternative to produce n-butyl acetate. This alternative combines substrate production (butanol and acetyl-coenzyme A (acetyl-CoA)), alcohol acyltransferase expression, and esterification reaction in one reactor. The alcohol acyltransferase gene ATF1 from Saccharomyces cerevisiae was introduced into Clostridium beijerinckii NCIMB 8052, enabling it to directly produce n-butyl acetate from glucose without lipase addition. Extractants were compared and adapted to realize glucose fermentation with in situ n-butyl acetate extraction. Finally, 5.57 g/L of butyl acetate was produced from 38.2 g/L of glucose within 48 h, which is 665-fold higher than that reported previously. This demonstrated the potential of such a metabolic approach to produce n-butyl acetate from biomass.


Assuntos
Acetatos/metabolismo , Clostridium beijerinckii/genética , Clostridium beijerinckii/metabolismo , Biomassa , Clostridium beijerinckii/crescimento & desenvolvimento , Fermentação , Glucose/metabolismo , Engenharia Metabólica , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
2.
Sci Rep ; 10(1): 8695, 2020 05 26.
Artigo em Inglês | MEDLINE | ID: mdl-32457521

RESUMO

The development of new methods capable of more realistic modeling of microbial communities necessitates that their results be quantitatively comparable with experimental findings. In this research, a new integrated agent and constraint based modeling framework abbreviated ACBM has been proposed that integrates agent-based and constraint-based modeling approaches. ACBM models the cell population in three-dimensional space to predict spatial and temporal dynamics and metabolic interactions. When used to simulate the batch growth of C. beijerinckii and two-species communities of F. prausnitzii and B. adolescent., ACBM improved on predictions made by two previous models. Furthermore, when transcriptomic data were integrated with a metabolic model of E. coli to consider intracellular constraints in the metabolism, ACBM accurately predicted growth rate, half-rate constant, and concentration of biomass, glucose, and acidic products over time. The results also show that the framework was able to predict the metabolism changes in the early stationary compared to the log phase. Finally, ACBM was implemented to estimate starved cells under heterogeneous feeding and it was concluded that a percentage of cells are always subject to starvation in a bioreactor with high volume.


Assuntos
Microbiota , Modelos Biológicos , Interface Usuário-Computador , Técnicas de Cultura Celular por Lotes , Bifidobacterium adolescentis/crescimento & desenvolvimento , Clostridium beijerinckii/crescimento & desenvolvimento , Faecalibacterium prausnitzii/crescimento & desenvolvimento
3.
Molecules ; 24(13)2019 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-31261835

RESUMO

Microbial fuel cells offer a technology for simultaneous biomass degradation and biological electricity generation. Microbial fuel cells have the ability to utilize a wide range of biomass including carbohydrates, such as starch. Sago hampas is a starchy biomass that has 58% starch content. With this significant amount of starch content in the sago hampas, it has a high potential to be utilized as a carbon source for the bioelectricity generation using microbial fuel cells by Clostridium beijerinckii SR1. The maximum power density obtained from 20 g/L of sago hampas was 73.8 mW/cm2 with stable cell voltage output of 211.7 mV. The total substrate consumed was 95.1% with the respect of 10.7% coulombic efficiency. The results obtained were almost comparable to the sago hampas hydrolysate with the maximum power density 56.5 mW/cm2. These results demonstrate the feasibility of solid biomass to be utilized for the power generation in fuel cells as well as high substrate degradation efficiency. Thus, this approach provides a promising way to exploit sago hampas for bioenergy generation.


Assuntos
Arecaceae/química , Fontes de Energia Bioelétrica/microbiologia , Clostridium beijerinckii/crescimento & desenvolvimento , Amido/química , Biomassa , Estudos de Viabilidade , Hidrólise
4.
Sci Rep ; 7(1): 12759, 2017 10 06.
Artigo em Inglês | MEDLINE | ID: mdl-28986542

RESUMO

Recent efforts to combat increasing greenhouse gas emissions include their capture into advanced biofuels, such as butanol. Traditionally, biobutanol research has been centered solely on its generation from sugars. Our results show partial re-assimilation of CO2 and H2 by n-butanol-producer C. beijerinckii. This was detected as synchronous CO2/H2 oscillations by direct (real-time) monitoring of their fermentation gasses. Additional functional analysis demonstrated increased total carbon recovery above heterotrophic values associated to mixotrophic assimilation of synthesis gas (H2, CO2 and CO). This was further confirmed using 13C-Tracer experiments feeding 13CO2 and measuring the resulting labeled products. Genome- and transcriptome-wide analysis revealed transcription of key C-1 capture and additional energy conservation genes, including partial Wood-Ljungdahl and complete reversed pyruvate ferredoxin oxidoreductase / pyruvate-formate-lyase-dependent (rPFOR/Pfl) pathways. Therefore, this report provides direct genetic and physiological evidences of mixotrophic inorganic carbon-capture by C. beijerinckii.


Assuntos
1-Butanol/metabolismo , Carbono/metabolismo , Clostridium beijerinckii/metabolismo , Dióxido de Carbono/metabolismo , Isótopos de Carbono , Clostridium beijerinckii/genética , Clostridium beijerinckii/crescimento & desenvolvimento , Elétrons , Metabolismo Energético , Fermentação , Perfilação da Expressão Gênica , Genes Bacterianos , Hidrogênio/metabolismo , Cinética , Espectroscopia de Ressonância Magnética , Modelos Biológicos , Nitritos/metabolismo , Fatores de Tempo , Transcrição Gênica , Transcriptoma/genética
5.
Appl Microbiol Biotechnol ; 101(21): 8041-8052, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28932978

RESUMO

Apple pomace was studied as a possible raw material for biobutanol production. Five different soft physicochemical pretreatments (autohydrolysis, acids, alkalis, organic solvents and surfactants) were compared in a high-pressure reactor, whose working parameters (temperature, time and reagent concentration) were optimised to maximise the amount of simple sugars released and to minimise inhibitor generation. The pretreated biomass was subsequently subjected to a conventional enzymatic treatment to complete the hydrolysis. A thermal analysis (DSC) of the solid biomass indicated that lignin was mainly degraded during the enzymatic treatment. The hydrolysate obtained with the surfactant polyethylene glycol 6000 (PEG 6000) (1.96% w/w) contained less inhibitors than any other pretreatment, yet providing 42 g/L sugars at relatively mild conditions (100 °C, 5 min), and was readily fermented by Clostridium beijerinckii CECT 508 in 96 h (3.55 g/L acetone, 9.11 g/L butanol, 0.26 g/L ethanol; 0.276 gB/gS yield; 91% sugar consumption). Therefore, it is possible to optimise pretreatment conditions of lignocellulosic apple pomace to reduce inhibitor concentrations in the final hydrolysate and perform successful ABE fermentations without the need of a detoxification stage.


Assuntos
Butanóis/metabolismo , Clostridium beijerinckii/metabolismo , Resíduos Industriais , Lignina/metabolismo , Malus/metabolismo , Açúcares/isolamento & purificação , Reatores Biológicos/microbiologia , Clostridium beijerinckii/crescimento & desenvolvimento , Fermentação , Hidrólise , Temperatura
6.
J Ind Microbiol Biotechnol ; 43(6): 741-50, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-27021843

RESUMO

Degeneration of solventogenic Clostridium strains is one of the major barriers in bio-butanol production. A degenerated Clostridium beijerinckii NCIMB 8052 strain (DG-8052) was obtained without any genetic manipulation. Supplementation of CaCO3 to fermentation medium could partially recover metabolism of DG-8052 by more than 50 % increase of cell growth and solvent production. This study investigated the protein expression profile of DG-8052 and its response to CaCO3 treatment. Compared with WT-8052, the lower expressed proteins were responsible for disruption of RNA secondary structures and DNA repair, sporulation, signal transduction, transcription regulation, and membrane transport in DG-8052. Interestingly, accompanied with the decreased glucose utilization and lower solvent production, there was a decreased level of sigma-54 modulation protein which may indicate that the level of sigma-54 activity may be associated with the observed strain degeneration. For the addition of CaCO3, proteomic and biochemical study results revealed that besides buffer capacity, Ca(2+) could stabilize heat shock proteins, increase DNA synthesis and replication, and enhance expression of solventogenic enzymes in DG-8052, which has a similar contribution in WT-8052.


Assuntos
Cálcio/química , Clostridium beijerinckii/crescimento & desenvolvimento , Proteômica , Butanóis/metabolismo , Carbonato de Cálcio/metabolismo , Clostridium beijerinckii/genética , Meios de Cultura/química , Fermentação , Microbiologia Industrial , Transcriptoma
7.
J Biosci Bioeng ; 122(3): 364-9, 2016 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27012376

RESUMO

This article aims to validate the use of calorimetry to measure the growth of anaerobic microbes. It has been difficult to monitor the growth of strict anaerobes while maintaining optimal growth conditions. Traditionally, optical density and ATP concentration are usually used as measures of the growth of anaerobic microbes. However, to take these measurements it is necessary to extract an aliquot of the culture, which can be difficult while maintaining anaerobic conditions. In this study, calorimetry was used to continuously and nondestructively measure the heat generated by the growth of anaerobic microbes as a function of time. Clostridium acetobutylicum, Clostridium beijerinckii, and Clostridium cellulovorans were used as representative anaerobic microbes. Using a multiplex isothermal calorimeter, we observed that peak time (tp) of C. acetobutylicum heat evolution increased as the inoculation rate decreased. This strong correlation between the inoculation rate and tp showed that it was possible to measure the growth rate of anaerobic microbes by calorimetry. Overall, our results showed that there is a very good correlation between heat evolution and optical density/ATP concentration, validating the use of the method.


Assuntos
Bactérias Anaeróbias/crescimento & desenvolvimento , Bactérias Anaeróbias/metabolismo , Calorimetria/métodos , Temperatura Alta , Trifosfato de Adenosina/metabolismo , Clostridium acetobutylicum/crescimento & desenvolvimento , Clostridium acetobutylicum/metabolismo , Clostridium beijerinckii/crescimento & desenvolvimento , Clostridium beijerinckii/metabolismo , Clostridium cellulovorans/crescimento & desenvolvimento , Clostridium cellulovorans/metabolismo
8.
J Biosci Bioeng ; 121(6): 697-700, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-26718336

RESUMO

We investigated butanol recovery by pervaporation separation, using a silicalite-1 membrane, from batch cultures of butanol-producing Clostridium beijerinckii SBP2 grown on sweet sorghum juice as a fermentation medium. The pervaporation system yielded 73% (w/v) butanol from intact feed cultures containing 1% (w/v) butanol, and had a butanol permeation flux of 11 g m(-2) h(-1). Upon neutralization and activated charcoal treatment of the feed cultures, butanol yield and total flux increased to 82% (w/v) and 40 g m(-2) h(-1), respectively. This system is applicable to refining processes for practical biobutanol production from a promising energy crop, sweet sorghum.


Assuntos
1-Butanol/isolamento & purificação , 1-Butanol/metabolismo , Acetona/metabolismo , Clostridium beijerinckii/metabolismo , Etanol/metabolismo , Fermentação , Membranas Artificiais , Sorghum/química , Técnicas de Cultura Celular por Lotes , Carvão Vegetal , Clostridium beijerinckii/crescimento & desenvolvimento , Volatilização
9.
Biotechnol Lett ; 38(4): 611-7, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26721235

RESUMO

OBJECTIVES: Most butanol-producing strains of Clostridium prefer glucose over xylose, leading to a slower butanol production from lignocellulose hydrolysates. It is therefore beneficial to find and use a strain that can simultaneously use both glucose and xylose. RESULTS: Clostridium beijerinckii SE-2 strain assimilated glucose and xylose simultaneously and produced ABE (acetone/butanol/ethanol). The classic diauxic growth behavior was not seen. Similar rates of sugar consumption (4.44 mM glucose h(-1) and 6.66 mM xylose h(-1)) were observed suggesting this strain could use either glucose or xylose as the substrate and it has a similar capability to degrade these two sugars. With different initial glucose:xylose ratios, glucose and xylose were consumed simultaneously at rates roughly proportional to their individual concentrations in the medium, leading to complete utilization of both sugars at the same time. CONCLUSIONS: ABE production profiles were similar on different substrates. Transcriptional studies on the effect of glucose and xylose supplementation, however, suggests a clear glucose inhibition on xylose metabolism-related genes is still present.


Assuntos
Acetona/metabolismo , Butanóis/metabolismo , Clostridium beijerinckii/crescimento & desenvolvimento , Etanol/metabolismo , Glucose/farmacologia , Xilose/farmacologia , Proteínas de Bactérias/genética , Clostridium beijerinckii/metabolismo , Fermentação , Regulação Bacteriana da Expressão Gênica , Transcrição Gênica/efeitos dos fármacos
10.
Prep Biochem Biotechnol ; 46(2): 141-9, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-25569768

RESUMO

Corncob is a potential feedstock in Thailand that can be used for fermentable sugar production through dilute sulfuric acid pretreatment and enzymatic hydrolysis. To recover high amounts of monomeric sugars from corncob, the sulfuric pretreatment conditions were optimized by using response surface methodology with three independent variables: sulfuric acid concentration, temperature, and time. The highest response of total sugars, 48.84 g/L, was found at 122.78°C, 4.65 min, and 2.82% (v/v) H2SO4. With these conditions, total sugars from the confirmation experiment were 46.29 g/L, with 5.51% error from the predicted value. The hydrolysate was used as a substrate for acetone-butanol-ethanol fermentation to evaluate its potential for microbial growth. The simultaneous saccharification and fermentation (SSF) showed that C. beijerinckii TISTR 1461 can generate acetone-butanol-ethanol products at 11.64 g/L (5.29 g/L acetone, 6.26 g/L butanol, and 0.09 g/L ethanol) instantly using sugars from the hydrolysed corncob with Novozymes 50013 cellulase enzyme without an overliming process.


Assuntos
Butanóis/metabolismo , Clostridium beijerinckii/metabolismo , Microbiologia Industrial/métodos , Zea mays/química , Acetona/metabolismo , Carboidratos , Celulase/química , Celulase/metabolismo , Clostridium beijerinckii/crescimento & desenvolvimento , Etanol/metabolismo , Fermentação , Hidrólise , Microscopia Eletrônica de Varredura , Tamanho da Partícula , Ácidos Sulfúricos/química , Difração de Raios X
11.
FEMS Microbiol Lett ; 362(19)2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26363015

RESUMO

Spore-forming solventogenic Clostridium spp. are receiving renewed attention due to their butanol production abilities. However, there is an absence of literature describing the preparation of dense, vigorous and homogeneous seed cultures of Clostridium spp., guaranteeing reproducibility during fermentation. Therefore, we performed a series of growth experiments of Clostridium beijerinckii NCIMB 8052 and its offspring SA-1 to evaluate the influence of inoculum age (harvest time) on the subsequent population's maximum specific growth rate, as a signal of population homogeneity. The organisms were cultivated in Reinforced Clostridial Medium and supplemented sweet sorghum juice. The best inoculum ages coincided with the late-exponential growth phase: between 9 and 11 h in the conditions tested. Additionally, the harvest time was delayed up to 4 h by pre-adapting the seed culture with 0.75 g L(-1) butyric acid. These findings were validated by performing a series of bench-top batch fermentations showcasing reproducibility in growth kinetics with 95% confidence limits. Overall, these experiments allowed us to understand the transient nature of seed cultures of C. beijerinckii NCIMB 8052 and SA-1, while enabling reproducibility and consistent culture performance.


Assuntos
Clostridium beijerinckii/crescimento & desenvolvimento , Microbiologia Industrial/métodos , Butanóis , Meios de Cultura , Etanol , Fermentação , Cinética , Reprodutibilidade dos Testes
12.
Talanta ; 141: 116-21, 2015 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-25966390

RESUMO

A new, simple, rapid and selective spectrophotometric method has been developed for detection and estimation of butanol in fermentation broth. The red colored compound, produced during reduction of diquat-dibromide-monohydrate with 2-mercaptoethanol in aqueous solution at high pH (>13), becomes purple on phase transfer to butanol and gives distinct absorption at λ520nm. Estimation of butanol in the fermentation broth has been performed by salting out extraction (SOE) using saturated K3PO4 solution at high pH (>13) followed by absorbance measurement using diquat reagent. Compatibility and optimization of diquat reagent concentration for detection and estimation of butanol concentration in the fermentation broth range was verified by central composite design. A standard curve was constructed to estimate butanol in acetone-ethanol-butanol (ABE) mixture under optimized conditions. The spectrophotometric results for butanol estimation, was found to have 87.5% concordance with the data from gas chromatographic analysis.


Assuntos
Acetona/metabolismo , Butanóis/análise , Clostridium beijerinckii/metabolismo , Etanol/metabolismo , Espectrofotometria/métodos , Butanóis/metabolismo , Clostridium beijerinckii/crescimento & desenvolvimento , Fermentação
13.
Prep Biochem Biotechnol ; 45(2): 173-91, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-24678653

RESUMO

Corncobs pretreated with H2SO4, HNO3, and H3PO4 were compared to evaluate the fermentation ability of Clostridium beijerinckii TISTR 1461 to produce biobutanol via acetone-butanol-ethanol (ABE) fermentation. It was found that the hydrolysate from H3PO4 pretreatment could be used as a substrate without any inhibitor removal methods. However, in terms of sugar yield, it gave the lowest total sugars in both pretreatment and enzymatic hydrolysis. Response surface methodology was applied to optimize enzymatic hydrolysis of the pretreated corncobs. The optimized conditions reduced the consumption of enzymes and hydrolysis time to 7.68 FPU/g biomass and 63.88 hr, respectively, and yielded 51.82 g/L reducing sugars. The Celluclast 1.5 L and Novozyme 188 enzyme ratio were varied to maximize the hydrolyzed sugars. The ABE fermentation, using substrate from phosphoric acid pretreatment of corncobs, with 10 g/L glucose supplementation produced 11.64 g/L of total ABE, which was close to the control experiment using synthetic medium. This study showed that corncobs pretreated with phosphoric acid could potentially be used as a substrate without using a detoxification process.


Assuntos
Clostridium beijerinckii/crescimento & desenvolvimento , Ácidos Fosfóricos/química , Zea mays/química , Biomassa , Butanóis/metabolismo , Fermentação , beta-Glucosidase/química
14.
Appl Biochem Biotechnol ; 174(8): 2801-17, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25374139

RESUMO

Phanerochaete chrysosporium was evaluated for cellulase and hemicellulase production using various agricultural wastes under solid state fermentation. Optimization of various environmental factors, type of substrate, and medium composition was systematically investigated to maximize the production of enzyme complex. Using grass powder as a carbon substrate, maximum activities of endoglucanase (188.66 U/gds), exoglucanase (24.22 U/gds), cellobiase (244.60 U/gds), filter paperase (FPU) (30.22 U/gds), glucoamylase (505.0 U/gds), and xylanase (427.0 U/gds) were produced under optimized conditions. The produced crude enzyme complex was employed for hydrolysis of untreated and mild acid pretreated rice husk. The maximum amount of reducing sugar released from enzyme treated rice husk was 485 mg/g of the substrate. Finally, the hydrolysates of rice husk were used for hydrogen production by Clostridium beijerinckii. The maximum cumulative H2 production and H2 yield were 237.97 mL and 2.93 mmoL H2/g of reducing sugar, (or 2.63 mmoL H2/g of cellulose), respectively. Biohydrogen production performance obtained from this work is better than most of the reported results from relevant studies. The present study revealed the cost-effective process combining cellulolytic enzymes production under solid state fermentation (SSF) and the conversion of agro-industrial residues into renewable energy resources.


Assuntos
Biocombustíveis , Celulase/química , Clostridium beijerinckii/crescimento & desenvolvimento , Proteínas Fúngicas/química , Glicosídeo Hidrolases/química , Hidrogênio/metabolismo , Phanerochaete/enzimologia , Resíduos Sólidos , Agricultura , Eliminação de Resíduos de Serviços de Saúde/métodos
15.
J Ind Microbiol Biotechnol ; 41(10): 1505-16, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25085743

RESUMO

Fermentation of liquid hot water (LHW) pretreated Miscanthus giganteus (MG) by Clostridium beijerinckii NCIMB 8052 was investigated towards understanding the toxicity of lignocellulose-derived inhibitors to solventogenic Clostridium species vis-à-vis butanol production. While C. beijerinckii NCIMB 8052 did not grow in undiluted MG hydrolysate-based fermentation medium, supplementation of this medium with Calcium carbonate enabled the growth of C. beijerinckii NCIMB 8052 and production of butanol. Using high-performance liquid chromatography (HPLC) and spectrophotometric assays, LHW-pretreated MG was found to contain lignocellulose-derived microbial inhibitory compounds; some of which were transformed by exponentially growing C. beijerinckii to less inhibitory compounds during fermentation. Contrary to all expectations, the reduction product of furfural, furfuryl alcohol, inhibited butanol production by C. beijerinckii by more than 16 %. Collectively, these results provide new insights into why lignocellulosic biomass hydrolysates are recalcitrant to fermentation to biofuels and chemicals.


Assuntos
Butanóis/metabolismo , Clostridium beijerinckii/metabolismo , Lignina/metabolismo , Poaceae/química , Acetona/metabolismo , Benzaldeídos/química , Benzaldeídos/metabolismo , Biocombustíveis , Carbonato de Cálcio/química , Clostridium beijerinckii/crescimento & desenvolvimento , Ácidos Cumáricos/química , Ácidos Cumáricos/metabolismo , Meios de Cultura , Etanol/metabolismo , Fermentação , Furaldeído/química , Furaldeído/metabolismo , Concentração de Íons de Hidrogênio , Hidrólise , Lignina/química , Preparações de Plantas/química , Preparações de Plantas/metabolismo
16.
Microb Cell Fact ; 13(1): 92, 2014 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-25023325

RESUMO

BACKGROUND: Butanol is an industrial commodity and also considered to be a more promising gasoline substitute compared to ethanol. Renewed attention has been paid to solvents (acetone, butanol and ethanol) production from the renewable and inexpensive substrates, for example, lignocellulose, on account of the depletion of oil resources, increasing gasoline prices and deteriorating environment. Limited to current tools for genetic manipulation, it is difficult to develop a genetically engineered microorganism with combined ability of lignocellulose utilization and solvents production. Mixed culture of cellulolytic microorganisms and solventogenic bacteria provides a more convenient and feasible approach for ABE fermentation due to the potential for synergistic utilization of the metabolic pathways of two organisms. But few bacteria pairs succeeded in producing biobutanol of high titer or high productivity without adding butyrate. The aim of this work was to use Clostridium cellulovorans 743B to saccharify lignocellulose and produce butyric acid, instead of adding cellulase and butyric acid to the medium, so that the soluble sugars and butyric acid generated can be subsequently utilized by Clostridium beijerinckii NCIMB 8052 to produce butanol in one pot reaction. RESULTS: A stable artificial symbiotic system was constructed by co-culturing a celluloytic, anaerobic, butyrate-producing mesophile (C. cellulovorans 743B) and a non-celluloytic, solventogenic bacterium (C. beijerinckii NCIMB 8052) to produce solvents by consolidated bioprocessing (CBP) with alkali extracted deshelled corn cobs (AECC), a low-cost renewable feedstock, as the sole carbon source. Under optimized conditions, the co-culture degraded 68.6 g/L AECC and produced 11.8 g/L solvents (2.64 g/L acetone, 8.30 g/L butanol and 0.87 g/L ethanol) in less than 80 h. Besides, a real-time PCR assay based on the 16S rRNA gene sequence was performed to study the dynamics of the abundance of each strain during the co-culturing process, which figured out the roles of each strain at different periods in the symbiosis. CONCLUSION: Our work illustrated the great potential of artificial symbiosis in biofuel production from lignocellulosic biomass by CBP. The dynamics of the abundance of C. beijerinckii and C. cellulovorans revealed mechanisms of cooperation and competition between the two strains during the co-culture process.


Assuntos
1-Butanol/metabolismo , Acetona/metabolismo , Clostridium beijerinckii/metabolismo , Clostridium cellulovorans/metabolismo , Etanol/metabolismo , Microbiologia Industrial/métodos , Zea mays/microbiologia , Clostridium beijerinckii/crescimento & desenvolvimento , Clostridium cellulovorans/crescimento & desenvolvimento , Técnicas de Cocultura , Fermentação , Simbiose , Zea mays/química
17.
Appl Microbiol Biotechnol ; 98(14): 6511-21, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24839212

RESUMO

Lignocellulose-derived microbial inhibitors such as furfural and 5-hydroxymethyl furfural adversely affect fermentation of lignocellulosic biomass hydrolysates to fuels and chemicals due to their toxicity on fermenting microbes. To harness the potential of lignocellulose as a cheap source of fermentable sugars, in situ detoxification of furfural and other lignocellulose-derived microbial inhibitors is essential. To enhance in situ detoxification and tolerance of furfural by Clostridium beijerinckii NCIMB 8052 during acetone-butanol-ethanol (ABE) fermentation, the effect of glycerol on NADH/NADPH generation and ABE production by furfural (4, 5, and 6 g/L)-challenged cultures was investigated in this study. In all instances, beneficial outcomes were observed. For example, the fermentation medium supplemented with glycerol and subjected to 5 g/L furfural elicited up to 1.8- and 3-fold increases, respectively, in NADH and NADPH levels in C. beijerinckii 8052 relative to the control culture. These critical changes are the likely underpinnings for the glycerol-mediated 2.3-fold increase in the rate of detoxification of 5 g/L furfural, substrate consumption, and ABE production compared to the unsupplemented medium. Collectively, these results demonstrate that increased intracellular NADH/NADPH in C. beijerinckii 8052 due to glycerol utilization engenders favorable effects on many aspects of cellular metabolism, including enhanced furfural reduction and increased ABE production.


Assuntos
Butanóis/metabolismo , Clostridium beijerinckii/metabolismo , Meios de Cultura/química , Furaldeído/metabolismo , Glicerol/metabolismo , Acetona/metabolismo , Biotransformação , Clostridium beijerinckii/crescimento & desenvolvimento , Etanol/metabolismo , Fermentação , NAD/metabolismo , NADP/metabolismo
18.
Microbiology (Reading) ; 159(Pt 12): 2558-2570, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24068240

RESUMO

Production of butanol by solventogenic clostridia is controlled through metabolic regulation of the carbon flow and limited by its toxic effects. To overcome cell sensitivity to solvents, stress-directed evolution methodology was used three decades ago on Clostridium beijerinckii NCIMB 8052 that spawned the SA-1 strain. Here, we evaluated SA-1 solventogenic capabilities when growing on a previously validated medium containing, as carbon- and energy-limiting substrates, sucrose and the products of its hydrolysis d-glucose and d-fructose and only d-fructose. Comparative small-scale batch fermentations with controlled pH (pH 6.5) showed that SA-1 is a solvent hyper-producing strain capable of generating up to 16.1 g l(-1) of butanol and 26.3 g l(-1) of total solvents, 62.3 % and 63 % more than NCIMB 8052, respectively. This corresponds to butanol and solvent yields of 0.3 and 0.49 g g(-1), respectively (63 % and 65 % increase compared with NCIMB 8052). SA-1 showed a deficiency in d-fructose transport as suggested by its 7 h generation time compared with 1 h for NCIMB 8052. To potentially correlate physiological behaviour with genetic mutations, the whole genome of SA-1 was sequenced using the Illumina GA IIx platform. PCR and Sanger sequencing were performed to analyse the putative variations. As a result, four errors were confirmed and validated in the reference genome of NCIMB 8052 and a total of 10 genetic polymorphisms in SA-1. The genetic polymorphisms included eight single nucleotide variants, one small deletion and one large insertion that it is an additional copy of the insertion sequence ISCb1. Two of the genetic polymorphisms, the serine threonine phosphatase cbs_4400 and the solute binding protein cbs_0769, may possibly explain some of the observed physiological behaviour, such as rerouting of the metabolic carbon flow, deregulation of the d-fructose phosphotransferase transport system and delayed sporulation.


Assuntos
Butanóis/metabolismo , Butanóis/toxicidade , Clostridium beijerinckii/efeitos dos fármacos , Clostridium beijerinckii/genética , DNA Bacteriano/genética , Genoma Bacteriano , Análise de Sequência de DNA , Carbono/metabolismo , Clostridium beijerinckii/crescimento & desenvolvimento , Clostridium beijerinckii/metabolismo , Meios de Cultura/química , DNA Bacteriano/química , Frutose/metabolismo , Glucose/metabolismo , Inibidores do Crescimento/toxicidade , Redes e Vias Metabólicas/genética , Dados de Sequência Molecular , Polimorfismo Genético , Solventes/metabolismo , Solventes/toxicidade
19.
BMC Genomics ; 12: 479, 2011 Sep 30.
Artigo em Inglês | MEDLINE | ID: mdl-21962126

RESUMO

BACKGROUND: Clostridium beijerinckii is an important solvent producing microorganism. The genome of C. beijerinckii NCIMB 8052 has recently been sequenced. Although transcriptome structure is important in order to reveal the functional and regulatory architecture of the genome, the physical structure of transcriptome for this strain, such as the operon linkages and transcript boundaries are not well understood. RESULTS: In this study, we conducted a single-nucleotide resolution analysis of the C. beijerinckii NCIMB 8052 transcriptome using high-throughput RNA-Seq technology. We identified the transcription start sites and operon structure throughout the genome. We confirmed the structure of important gene operons involved in metabolic pathways for acid and solvent production in C. beijerinckii 8052, including pta-ack, ptb-buk, hbd-etfA-etfB-crt (bcs) and ald-ctfA-ctfB-adc (sol) operons; we also defined important operons related to chemotaxis/motility, transcriptional regulation, stress response and fatty acids biosynthesis along with others. We discovered 20 previously non-annotated regions with significant transcriptional activities and 15 genes whose translation start codons were likely mis-annotated. As a consequence, the accuracy of existing genome annotation was significantly enhanced. Furthermore, we identified 78 putative silent genes and 177 putative housekeeping genes based on normalized transcription measurement with the sequence data. We also observed that more than 30% of pseudogenes had significant transcriptional activities during the fermentation process. Strong correlations exist between the expression values derived from RNA-Seq analysis and microarray data or qRT-PCR results. CONCLUSIONS: Transcriptome structural profiling in this research provided important supplemental information on the accuracy of genome annotation, and revealed additional gene functions and regulation in C. beijerinckii.


Assuntos
Clostridium beijerinckii/genética , Análise de Sequência de RNA , Transcriptoma , Clostridium beijerinckii/crescimento & desenvolvimento , Regulação Bacteriana da Expressão Gênica , Reação em Cadeia da Polimerase Via Transcriptase Reversa
20.
Int J Food Microbiol ; 150(1): 59-65, 2011 Oct 17.
Artigo em Inglês | MEDLINE | ID: mdl-21849216

RESUMO

In the manufacture of model cheeses, ovine milk was deliberately contaminated with spores of Clostridium beijerinckii INIA 63, a wild isolate from Manchego cheese with late blowing defect, and inoculated with nisin- and lacticin 481-producing Lactococcus lactis subsp. lactis INIA 415 as starter, to test its potential to prevent the late blowing defect, or with L. lactis subsp. lactis INIA 415-2, a spontaneous mutant not producing bacteriocins. Cheeses made individually with the lactococcal strains, without clostridial spores, served as controls. Cheese made with clostridial spores and L. lactis subsp. lactis INIA 415-2 showed late blowing defect after 120days of ripening. Spoilt cheese also showed lower concentrations of lactic acid, and higher levels of acetic, propionic and butyric acids, and of other volatile compounds such as 2-propanol and 1-butanol, than control cheese. In addition, cheese made with the bacteriocin producer did not show any late blowing symptoms, despite its spore counts similar to those of blown cheese, pointing to outgrowth inhibition of C. beijerinckii spores by bacteriocins. Besides, cheese made with the bacteriocin producer showed similar concentrations of lactic acid and volatile compounds than control cheese. Inclusion of L. lactis subsp. lactis INIA 415 in starter cultures seems a feasible method to prevent late blowing defect in cheese without altering its sensory characteristics.


Assuntos
Bacteriocinas/farmacologia , Queijo/microbiologia , Clostridium beijerinckii/efeitos dos fármacos , 1-Butanol , 2-Propanol , Animais , Bacteriocinas/metabolismo , Clostridium/efeitos dos fármacos , Clostridium beijerinckii/classificação , Clostridium beijerinckii/crescimento & desenvolvimento , Clostridium beijerinckii/metabolismo , Técnicas de Cocultura , Lactococcus lactis/crescimento & desenvolvimento , Lactococcus lactis/metabolismo , Leite/microbiologia , Nisina , Ovinos , Carneiro Doméstico , Esporos Bacterianos/efeitos dos fármacos , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/metabolismo
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