Automatic Alignment of Cranial CT Examinations to the Anterior Commissure/Posterior Commissure (ACPC) Reference Plane for Reliable Interpretation and Quality Assurance.

Alignment of cranial CT scans (cCTs) to a common reference plane simplifies anatomical-landmark-based orientation and eases follow-up assessment of intracranial findings. We developed and open sourced a fully automated system, which aligns cCTs to the Anterior Commissure/Posterior Commissure (ACPC) line and exports the results to the PACS. FMRIB's Linear Image Registration Tool (FLIRT) with an ACPC-aligned atlas is used in the alignment step. Five mm mean slabs are generated with the top non-air slice as the starting point. For evaluation, 301 trauma cCTs from the CQ500 dataset were processed. In visual comparison with the respective ACPC-aligned atlas, all were successfully aligned. Image quality (IQ) and ease of identification of the central sulcus (CS) were rated on a Likert scale (5 = excellent IQ/immediate CS identification). The median IQ was 4 (range: 2-4) in the original series and 5 (range: 4-5) in the ACPC-aligned series (p < 0.0001). The CS was more easily identified after fatbACPC (original scans: 4 (range: 2-5); ACPC-aligned: 5 (range: 4-5); p < 0.0001). The mean rotation to achieve alignment was |X| = 6.4 ±â€Š5.2° ([-X,+X] = -26.8°-24.2°), |Y| = 2.1 ± 1.7° ([-Y,+Y] = -8.7°-9.8°), and |Z| = 3.1 ±â€Š2.4° ([-Z,+Z] = -14.3°-12.5°). The developed system can robustly and automatically align cCTs to the ACPC line. Degrees of deviation from the ideal alignment could be used for quality assurance. KEY POINTS:: · fatbACPC automatically aligns cranial CT scans to the Anterior Commissure/Posterior Commissure plane.. · ACPC-aligned images simplify anatomical-landmark-based orientation.. · fatbACPC does not impact image quality.. · fatbACPC is robust, fully PACS-integrated, and Open Source: https://github.com/BrainImAccs. CITATION FORMAT: · Rubbert C, Turowski B, Caspers J. Automatic Alignment of Cranial CT Examinations to the Anterior Commissure/Posterior Commissure (ACPC) Reference Plane for Reliable Interpretation and Quality Assurance. Fortschr Röntgenstr 2021; 193: 61 - 67.

The Complex Structure of the Anterior White Commissure of the Human Brain: Fiber Dissection and Tractography Study.

OBJECTIVE: Commissural fibers are necessary for bilateral integration, body coordination, and complex cognitive information flow between the hemispheres. The anterior commissure (AC) has a complex architecture interconnecting areas of the frontal, temporal and occipital lobes. The present study aims to demonstrate the connections and the course of the anterior (ACa) and posterior (ACp) limb of the AC using fiber dissection and diffusion tensor imaging (DTI) of the human brain. METHODS: Fiber dissection was performed in a stepwise manner from lateral to medial on 6 left hemispheres. The gray matter was decorticated and the ACa-ACp was exposed. The ACa and ACp tracts were demonstrated using a high-spatial-resolution DTI with a 3T magnetic resonance unit in 13 cases. RESULTS: Using both techniques showed that the AC has complex interconnections with large areas of the frontal (olfactory tubercles, anterior olfactory nucleus, olfactory bulb, and the orbital gyri), temporal (amygdaloidal nuclei, temporal and perirhinal cortex), and occipital (visual cortex) lobes. The ACp makes up the major component of the AC and is composed of temporal and occipital fibers. We observed that these fibers do not make a distinct bundle; the temporal fibers joined the uncinate fasciculus and the occipital fibers joined the sagittal striatum to reach their targets. CONCLUSIONS: Being aware of the course of the AC is important during transcallosal and interforniceal approaches to the third ventricle tumors and temporal lobe epilepsy surgery. The intermingling fibers of the AC can provide a better understanding of the unexplained deficit that may occur during regional surgery.

Schwalbe's Triangular Fossa: Normal and Pathologic Anatomy on Frozen Cadavers. Anatomo-Magnetic Resonance Imaging Comparison and Surgical Implications in Colloid Cyst Surgery.

BACKGROUND: The fornix is a region of greatest neurosurgical interest in regards to its complex anatomy and surgical approaches to this area. The objective of this study was to evaluate the morphology of the triangular recess (TR) and its role in the growth pattern of the colloid cysts (CC) within the third ventricle and in the choice of the surgical approach for their removal. Furthermore, to compare the results of the dissections with measurements performed on a magnetic resonance imaging scan. METHODS: In the anatomic study, 20 cadaveric specimens were dissected and analyzed. In the radiologic study, a magnetic resonance imaging scan was performed in 20 healthy volunteers. In the clinical study, a retrospective analysis of all the patients affected with CCs microsurgically removed at our institute between 2010 and 2018 was conducted. RESULTS: In the anatomic study, the width, height, and the area of the TR were respectively 0.31 cm, 0.33cm, and 0.051 cm2. In the radiologic study, 3 different typologies of TR were identified: open recess in ventriculomegaly (7 patients); open recess in physiologic ventricular system (3 patients); closed or blind recess (10 patients). Three different growth patterns of CCs were identified: type 1) CCs localized at the foramen of Monro growing behind the fornix and below the third ventricular roof; type 2) CCs growing rostrally between the column of fornix; and type 3) CCs growing above the plane of the third ventricular roof. CONCLUSIONS: The anatomy of the TR influences the growth pattern of CC within the ventricular cavity and determines the surgical strategy for their removal.

White matter changes in microstructure associated with a maladaptive response to stress in rats.

In today's society, every individual is subjected to stressful stimuli with different intensities and duration. This exposure can be a key trigger in several mental illnesses greatly affecting one's quality of life. Yet not all subjects respond equally to the same stimulus and some are able to better adapt to them delaying the onset of its negative consequences. The neural specificities of this adaptation can be essential to understand the true dynamics of stress as well as to design new approaches to reduce its consequences. In the current work, we employed ex vivo high field diffusion magnetic resonance imaging (MRI) to uncover the differences in white matter properties in the entire brain between Fisher 344 (F344) and Sprague-Dawley (SD) rats, known to present different responses to stress, and to examine the effects of a 2-week repeated inescapable stress paradigm. We applied a tract-based spatial statistics (TBSS) analysis approach to a total of 25 animals. After exposure to stress, SD rats were found to have lower values of corticosterone when compared with F344 rats. Overall, stress was found to lead to an overall increase in fractional anisotropy (FA), on top of a reduction in mean and radial diffusivity (MD and RD) in several white matter bundles of the brain. No effect of strain on the white matter diffusion properties was observed. The strain-by-stress interaction revealed an effect on SD rats in MD, RD and axial diffusivity (AD), with lower diffusion metric levels on stressed animals. These effects were localized on the left side of the brain on the external capsule, corpus callosum, deep cerebral white matter, anterior commissure, endopiriform nucleus, dorsal hippocampus and amygdala fibers. The results possibly reveal an adaptation of the SD strain to the stressful stimuli through synaptic and structural plasticity processes, possibly reflecting learning processes.

Fibre tract analysis using diffusion tensor imaging reveals aberrant connectivity in a rat model of depression.

OBJECTIVES: Abnormal brain connectivity has been described in depressive disorder. However, these studies are correlational or cross-sectional and their design does not examine causal relationships. We aimed to investigate structural connectivity in a genetic rat model of depression. METHODS: Using diffusion tensor imaging (DTI), we reconstructed white matter tracts and analysed fractional anisotropy (FA) and diffusivity indices (mean, axial and radial) to investigate structural connectivity in fibre tracts implicated in major depression: the corpus callosum, fornix, cingulum and anterior commissures. RESULTS: Tractography-based analysis revealed that, compared to Wistar control rats, the Wistar-Kyoto strain (WKY) rat model of depression exhibited decreased connectivity, manifested by decreased FA in the corpus callosum, right and left anterior commissures. A statistical trend of decreased FA was observed in both the right and left cingulum. Increased diffusivity (mean diffusion) was detected in both the corpus callosum and the fornix of WKY rats compared to controls. Voxel-based analysis confirmed differences between WKY and controls in the regions investigated. CONCLUSIONS: Decreased connectivity in a genetic rat model of depression corroborates the findings in patients suffering from major depression suggesting that the vulnerability for developing depression is mainly polygenic and less likely to be due to childhood adversity per se.