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1.
Microsc Res Tech ; 83(8): 937-944, 2020 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-32233103

RESUMO

The fluorescent metabolic labeling of microorganisms genome is an advanced imaging technique to observe and study the native shapes, structural changes, functions, and tracking of nucleic acids in single cells or tissues. We have attempted to visualize the newly synthesized DNA within the intact nucleoid of ice-embedded proliferating cells of Escherichia coli K-12 (thymidine-requiring mutant, strain N4316) via correlative light-electron microscopy. For that purpose, erythrosine-11-dUTP was synthesized and used as a modified analog of the exogenous thymidine substrate for metabolic incorporation into the bacterial chromosome. The formed fluorescent genomic DNA during in cellulo polymerase reaction caused a minimal cellular arrest and cytotoxicity of E. coli at certain controlled conditions. The stained cells were visualized in typical red emission color via an epifluorescence microscope. They were further ice-embedded and examined with a Hilbert differential contrast transmission electron microscopy. At high-resolution, the ultrastructure of tagged nucleoid appeared with significantly higher electron dense in comparison to the unlabeled one. The enhanced contrast areas in the chromosome were ascribed to the presence of iodine contents from erythrosine dye. The presented labeling approach might be a powerful strategy to reveal the structural and dynamic changes in natural DNA replication including the relationship between newly synthesized in vivo nucleic acid and the physiological state of the cell.


Assuntos
DNA Bacteriano/genética , Nucleotídeos de Desoxiuracil/química , Eritrosina/química , Escherichia coli K12/genética , Escherichia coli K12/ultraestrutura , Microscopia Eletrônica de Transmissão/métodos , Eritrosina/análogos & derivados , Testes de Sensibilidade Microbiana , Microscopia de Fluorescência/métodos , Microscopia de Contraste de Fase/métodos , Conformação Molecular , Coloração e Rotulagem/métodos
2.
Bull Exp Biol Med ; 168(4): 488-491, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-32146628

RESUMO

The method of pulsed laser processing with a nanosecond pulse duration was employed to obtain a nanotexture on the surface of copper alloys. The effect of the obtained micro- and nanotexture on the bactericidal properties of the surface upon its contact with suspensions containing of E. coli K12 C600 or K. pneumoniae 811 cells in a nutrient medium were studied. The evolution of cell morphology after on the nanotextured surface was analyzed using scanning electron microscopy, and changes in biological fluid during this contact were studied by mass spectrometry. It was shown that massive death of bacterial cells both in the suspension and on the nanotextured surface was determined by combined toxic effects of the hierarchically textured surface and high concentration of Cu2+ ions in the medium.


Assuntos
Ligas/farmacologia , Antibacterianos/farmacologia , Cobre/farmacologia , Escherichia coli K12/efeitos dos fármacos , Klebsiella pneumoniae/efeitos dos fármacos , Nanopartículas/toxicidade , Ligas/química , Ligas/efeitos da radiação , Antibacterianos/química , Antibacterianos/efeitos da radiação , Cobre/química , Cobre/efeitos da radiação , Escherichia coli K12/crescimento & desenvolvimento , Escherichia coli K12/ultraestrutura , Interações Hidrofóbicas e Hidrofílicas , Klebsiella pneumoniae/crescimento & desenvolvimento , Klebsiella pneumoniae/ultraestrutura , Lasers , Testes de Sensibilidade Microbiana , Microscopia Eletrônica de Varredura , Nanopartículas/química , Nanopartículas/efeitos da radiação , Propriedades de Superfície
3.
Nat Commun ; 9(1): 1885, 2018 05 14.
Artigo em Inglês | MEDLINE | ID: mdl-29760469

RESUMO

The bacterial flagellum is a large extracellular protein organelle that extrudes from the cell surface. The flagellar filament is assembled from tens of thousands of flagellin subunits that are exported through the flagellar type III secretion system. Here, we measure the growth of Escherichia coli flagella in real time and find that, although the growth rate displays large variations at similar lengths, it decays on average as flagella lengthen. By tracking single flagella, we show that the large variations in growth rate occur as a result of frequent pauses. Furthermore, different flagella on the same cell show variable growth rates with correlation. Our observations are consistent with an injection-diffusion model, and we propose that an insufficient cytoplasmic flagellin supply is responsible for the pauses in flagellar growth in E. coli.


Assuntos
Escherichia coli K12/ultraestrutura , Flagelos/ultraestrutura , Flagelina/ultraestrutura , Imagem com Lapso de Tempo/métodos , Sistemas de Secreção Tipo III/fisiologia , Arsenicais/química , Arsenicais/metabolismo , Cisteína/química , Cisteína/metabolismo , Escherichia coli K12/fisiologia , Flagelos/fisiologia , Flagelina/metabolismo , Corantes Fluorescentes/química , Corantes Fluorescentes/metabolismo , Oligopeptídeos/química , Oligopeptídeos/metabolismo , Biossíntese de Proteínas , Subunidades Proteicas/química , Subunidades Proteicas/metabolismo
4.
Cell ; 172(4): 771-783.e18, 2018 02 08.
Artigo em Inglês | MEDLINE | ID: mdl-29358050

RESUMO

As in eukaryotes, bacterial genomes are not randomly folded. Bacterial genetic information is generally carried on a circular chromosome with a single origin of replication from which two replication forks proceed bidirectionally toward the opposite terminus region. Here, we investigate the higher-order architecture of the Escherichia coli genome, showing its partition into two structurally distinct entities by a complex and intertwined network of contacts: the replication terminus (ter) region and the rest of the chromosome. Outside of ter, the condensin MukBEF and the ubiquitous nucleoid-associated protein (NAP) HU promote DNA contacts in the megabase range. Within ter, the MatP protein prevents MukBEF activity, and contacts are restricted to ∼280 kb, creating a domain with distinct structural properties. We also show how other NAPs contribute to nucleoid organization, such as H-NS, which restricts short-range interactions. Combined, these results reveal the contributions of major evolutionarily conserved proteins in a bacterial chromosome organization.


Assuntos
Adenosina Trifosfatases , Cromossomos Bacterianos , Proteínas de Ligação a DNA , Escherichia coli K12 , Complexos Multiproteicos , Adenosina Trifosfatases/genética , Adenosina Trifosfatases/metabolismo , Adenosina Trifosfatases/ultraestrutura , Proteínas Cromossômicas não Histona/genética , Proteínas Cromossômicas não Histona/metabolismo , Cromossomos Bacterianos/genética , Cromossomos Bacterianos/metabolismo , Cromossomos Bacterianos/ultraestrutura , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Proteínas de Ligação a DNA/ultraestrutura , Escherichia coli K12/genética , Escherichia coli K12/metabolismo , Escherichia coli K12/ultraestrutura , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Complexos Multiproteicos/genética , Complexos Multiproteicos/metabolismo , Complexos Multiproteicos/ultraestrutura , Estrutura Quaternária de Proteína , Proteínas Repressoras/genética , Proteínas Repressoras/metabolismo
5.
PLoS Pathog ; 13(12): e1006768, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29211815

RESUMO

Enteric viruses encounter diverse environments as they migrate through the gastrointestinal tract to infect their hosts. The interaction of eukaryotic viruses with members of the host microbiota can greatly impact various aspects of virus biology, including the efficiency with which viruses can infect their hosts. Mammalian orthoreovirus, a human enteric virus that infects most humans during childhood, is negatively affected by antibiotic treatment prior to infection. However, it is not known how components of the host microbiota affect reovirus infectivity. In this study, we show that reovirus virions directly interact with Gram positive and Gram negative bacteria. Reovirus interaction with bacterial cells conveys enhanced virion thermostability that translates into enhanced attachment and infection of cells following an environmental insult. Enhanced virion thermostability was also conveyed by bacterial envelope components lipopolysaccharide (LPS) and peptidoglycan (PG). Lipoteichoic acid and N-acetylglucosamine-containing polysaccharides enhanced virion stability in a serotype-dependent manner. LPS and PG also enhanced the thermostability of an intermediate reovirus particle (ISVP) that is associated with primary infection in the gut. Although LPS and PG alter reovirus thermostability, these bacterial envelope components did not affect reovirus utilization of its proteinaceous cellular receptor junctional adhesion molecule-A or cell entry kinetics. LPS and PG also did not affect the overall number of reovirus capsid proteins σ1 and σ3, suggesting their effect on virion thermostability is not mediated through altering the overall number of major capsid proteins on the virus. Incubation of reovirus with LPS and PG did not significantly affect the neutralizing efficiency of reovirus-specific antibodies. These data suggest that bacteria enhance reovirus infection of the intestinal tract by enhancing the thermal stability of the reovirus particle at a variety of temperatures through interactions between the viral particle and bacterial envelope components.


Assuntos
Bacillus subtilis/fisiologia , Enterócitos/virologia , Escherichia coli K12/fisiologia , Infecções por Reoviridae/virologia , Reoviridae/fisiologia , Acetilglucosamina/análogos & derivados , Acetilglucosamina/metabolismo , Acetilglucosamina/toxicidade , Bacillus subtilis/metabolismo , Bacillus subtilis/ultraestrutura , Bacillus subtilis/virologia , Células CACO-2 , Endotoxinas/metabolismo , Endotoxinas/toxicidade , Enterócitos/efeitos dos fármacos , Enterócitos/microbiologia , Enterócitos/patologia , Escherichia coli K12/metabolismo , Escherichia coli K12/ultraestrutura , Escherichia coli K12/virologia , Microbioma Gastrointestinal , Células HeLa , Temperatura Alta , Humanos , Lipopolissacarídeos/metabolismo , Lipopolissacarídeos/toxicidade , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Microscopia Eletrônica de Transmissão , Peptidoglicano/metabolismo , Peptidoglicano/toxicidade , RNA/metabolismo , Estabilidade de RNA/efeitos dos fármacos , Proteínas Recombinantes/metabolismo , Reoviridae/química , Reoviridae/efeitos dos fármacos , Reoviridae/patogenicidade , Infecções por Reoviridae/metabolismo , Infecções por Reoviridae/microbiologia , Infecções por Reoviridae/patologia , Ácidos Teicoicos/metabolismo , Ácidos Teicoicos/toxicidade , Vírion/química , Vírion/patogenicidade , Vírion/fisiologia , Ligação Viral/efeitos dos fármacos , Internalização do Vírus/efeitos dos fármacos , Proteína Vermelha Fluorescente
6.
Proc Natl Acad Sci U S A ; 114(17): E3396-E3403, 2017 04 25.
Artigo em Inglês | MEDLINE | ID: mdl-28396444

RESUMO

Recent work suggests that bacterial YjeQ (RsgA) participates in the late stages of assembly of the 30S subunit and aids the assembly of the decoding center but also binds the mature 30S subunit with high affinity. To determine the function and mechanisms of YjeQ in the context of the mature subunit, we determined the cryo-EM structure of the fully assembled 30S subunit in complex with YjeQ at 5.8-Å resolution. We found that binding of YjeQ stabilizes helix 44 into a conformation similar to that adopted by the subunit during proofreading. This finding indicates that, along with acting as an assembly factor, YjeQ has a role as a checkpoint protein, consisting of testing the proofreading ability of the 30S subunit. The structure also informs the mechanism by which YjeQ implements the release from the 30S subunit of a second assembly factor, called RbfA. Finally, it reveals how the 30S subunit stimulates YjeQ GTPase activity and leads to release of the protein. Checkpoint functions have been described for eukaryotic ribosome assembly factors; however, this work describes an example of a bacterial assembly factor that tests a specific translation mechanism of the 30S subunit.


Assuntos
Microscopia Crioeletrônica , Escherichia coli K12/química , Proteínas de Escherichia coli/química , GTP Fosfo-Hidrolases/química , Subunidades Ribossômicas Menores de Bactérias/química , Subunidades Ribossômicas Menores de Bactérias/ultraestrutura , Escherichia coli K12/metabolismo , Escherichia coli K12/ultraestrutura , Proteínas de Escherichia coli/metabolismo , GTP Fosfo-Hidrolases/metabolismo , Ligação Proteica , Estrutura Quaternária de Proteína , Estrutura Secundária de Proteína , Proteínas Ribossômicas/química , Proteínas Ribossômicas/metabolismo , Subunidades Ribossômicas Menores de Bactérias/metabolismo
7.
Microb Drug Resist ; 23(5): 531-544, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-27854150

RESUMO

Berberine is a plant-derived alkaloid possessing antimicrobial activity; unfortunately, its efflux through multidrug resistance pumps reduces its efficacy. Cellular life span of Escherichia coli is generally shorter with prolonged berberine exposure; nevertheless, about 30% of the cells still remain robust following this treatment. To elucidate its mechanism of action and to identify proteins that could be involved in development of antimicrobial resistance, protein profiles of E. coli cells treated with berberine for 4.5 and 8 hours were compared with control cells. A total of 42 proteins were differentially expressed in cells treated with berberine for 8 hours when compared to control cells. In both 4.5 and 8 hours of berberine-treated cells, carbohydrate and peptide uptake regimens remained unchanged, although amino acid maintenance regimen switched from transport to synthesis. Defect in cell division persisted and this condition was confirmed by images obtained from scanning electron microscopy. Universal stress proteins were not involved in stress response. The significant increase in the abundance of elongation factors could suggest the involvement of these proteins in protection by exhibiting chaperone activities. Furthermore, the involvement of the outer membrane protein OmpW could receive special attention as a protein involved in response to antimicrobial agents, since the expression of only this porin protein was upregulated after 8 hours of exposure.


Assuntos
Antibacterianos/farmacologia , Berberina/farmacologia , Escherichia coli K12/efeitos dos fármacos , Regulação Bacteriana da Expressão Gênica/efeitos dos fármacos , Biossíntese de Proteínas/efeitos dos fármacos , Proteoma/genética , Proteínas da Membrana Bacteriana Externa/agonistas , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Transporte Biológico/efeitos dos fármacos , Divisão Celular/efeitos dos fármacos , Farmacorresistência Bacteriana/genética , Escherichia coli K12/genética , Escherichia coli K12/metabolismo , Escherichia coli K12/ultraestrutura , Proteínas de Escherichia coli/agonistas , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Perfilação da Expressão Gênica , Ontologia Genética , Redes e Vias Metabólicas/efeitos dos fármacos , Redes e Vias Metabólicas/genética , Anotação de Sequência Molecular , Proteoma/metabolismo , Fatores de Tempo
8.
Biochim Biophys Acta ; 1858(5): 918-25, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26730877

RESUMO

Multi-drug resistant bacteria are currently undermining our health care system worldwide. While novel antimicrobial drugs, such as antimicrobial peptides, are urgently needed, identification of new modes of action is money and time consuming, and in addition current approaches are not available in a high throughput manner. Here we explore how small angle X-ray scattering (SAXS) as high throughput method can contribute to classify the mode of action for novel antimicrobials and therefore supports fast decision making in drug development. Using data bases for natural occurring antimicrobial peptides or predicting novel artificial peptides, many candidates can be discovered that will kill a selected target bacterium. However, in order to narrow down the selection it is important to know if these peptides follow all the same mode of action. In addition, the mode of action should be different from conventional antibiotics, in consequence peptide candidates can be developed further into drugs against multi-drug resistant bacteria. Here we used one short antimicrobial peptide with unknown mode of action and compared the ultrastructural changes of Escherichia coli cells after treatment with the peptide to cells treated with classic antibiotics. The key finding is that SAXS as a structure sensitive tool provides a rapid feedback on drug induced ultrastructural alterations in whole E. coli cells. We could demonstrate that ultrastructural changes depend on the used antibiotics and their specific mode of action. This is demonstrated using several well characterized antimicrobial compounds and the analysis of resulting SAXS curves by principal component analysis. To understand the result of the PCA analysis, the data is correlated with TEM images. In contrast to real space imaging techniques, SAXS allows to obtain nanoscale information averaged over approximately one million cells. The measurement takes only seconds, while conventional tests to identify a mode of action require days or weeks per single substance. The antimicrobial peptide showed a different mode of action as all tested antibiotics including polymyxin B and is therefore a good candidate for further drug development. We envision SAXS to become a useful tool within the high-throughput screening pipeline of modern drug discovery. This article is part of a Special Issue entitled: Antimicrobial peptides edited by Karl Lohner and Kai Hilpert.


Assuntos
Antibacterianos/farmacologia , Peptídeos Catiônicos Antimicrobianos/farmacologia , Escherichia coli K12/efeitos dos fármacos , Ensaios de Triagem em Larga Escala , Aminoglicosídeos/química , Aminoglicosídeos/farmacologia , Antibacterianos/química , Peptídeos Catiônicos Antimicrobianos/química , Cloranfenicol/química , Cloranfenicol/farmacologia , Ciprofloxacina/química , Ciprofloxacina/farmacologia , Descoberta de Drogas , Escherichia coli K12/crescimento & desenvolvimento , Escherichia coli K12/ultraestrutura , Microscopia Eletrônica de Transmissão , Polimixina B/química , Polimixina B/farmacologia , Análise de Componente Principal , Rifampina/química , Rifampina/farmacologia , Espalhamento a Baixo Ângulo , Tetraciclina/química , Tetraciclina/farmacologia , Difração de Raios X , beta-Lactamas/química , beta-Lactamas/farmacologia
9.
Nanoscale ; 7(39): 16230-6, 2015 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-26315848

RESUMO

The lack of practical methods for bacterial separation remains a hindrance for the low-cost and successful development of rapid detection methods from complex samples. Antibody-tagged magnetic particles are commonly used to pull analytes from a liquid sample. While this method is well-established, improvements in capture efficiencies would result in an increase of the overall detection assay performance. Bacteriophages represent a low-cost and more consistent biorecognition element as compared to antibodies. We have developed nanoscale bacteriophage-tagged magnetic probes, where T7 bacteriophages were bound to magnetic nanoparticles. The nanoprobe allowed the specific recognition and attachment to E. coli cells. The phage magnetic nanprobes were directly compared to antibody-conjugated magnetic nanoprobes. The capture efficiencies of bacteriophages and antibodies on nanoparticles for the separation of E. coli K12 at varying concentrations were determined. The results indicated a similar bacteria capture efficiency between the two nanoprobes.


Assuntos
Bacteriófago T7/química , Escherichia coli K12/citologia , Nanopartículas de Magnetita/química , Bacteriófago T7/ultraestrutura , Escherichia coli K12/ultraestrutura , Nanopartículas de Magnetita/ultraestrutura
10.
FEMS Microbiol Lett ; 362(15): fnv112, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26187746

RESUMO

Bacterial surface components have a major role in the development of biofilms. In the present study, the effect of Escherichia coli O8-antigen on biofilms was investigated using two E. coli K-12 derived strains that differed only in the O8-antigen biosynthesis. In the presence of O8-antigen both bacterial adhesion and biofilm formation slightly decreased under static conditions whereas a substantial increase in adhesion and biofilm formation was observed under agitated conditions. It was noted that, irrespective of the O8-antigen status, the hydrophobic interactions played an important role in bacterial adhesion under both static and agitated conditions. However, under agitated conditions, the extent of bacterial adhesion in the O8-antigen bearing strain was predominantly determined by the electrostatic interactions. Results showed that the presence of O8-antigen decreases the surface hydrophobicity and surface charge. Moreover, O8-antigen facilitates adhesion on hydrophilic and hydrophobic surfaces as revealed through tests with modified substrata. Our results indicate that O8-antigen, which appears dispensable for biofilm formation under static conditions, actually enhances E. coli biofilm formation under agitated conditions.


Assuntos
Biofilmes/crescimento & desenvolvimento , Escherichia coli K12/fisiologia , Antígenos O/fisiologia , Aderência Bacteriana , Escherichia coli K12/genética , Escherichia coli K12/imunologia , Escherichia coli K12/ultraestrutura , Interações Hidrofóbicas e Hidrofílicas , Lipopolissacarídeos/fisiologia , Antígenos O/química , Antígenos O/genética , Propriedades de Superfície
11.
Water Res ; 86: 17-24, 2015 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-26084941

RESUMO

Biohazards are widely present in wastewater, and contaminated water can arouse various waterborne diseases. Therefore, effectively removing biohazards from water is a worldwide need. In this study, a novel visible-light-driven (VLD) graphitic carbon nitride (g-C3N4)/TiO2 hybrid photocatalyst with high photocatalytic bacterial inactivation activity was successfully synthesized using a facile hydrothermal-calcination approach. The optimum synthesized hybrid photocatalyst is composed of micron-sized TiO2 spheres (average diameter: ca. 2 µm) and wrapped with lamellar g-C3N4 (thickness: ca. 2 nm), with narrowing bandgap (ca. 2.48 eV), leading to a significant improvement of visible light (VL) absorption and effective separation of photo-generated electron-hole pairs. This greatly enhances VL photocatalytic inactivation activity towards bacteria in water. Using this hybrid photocatalyst, 10(7) cfu mL(-1) of Escherichia coli K-12 could be completely inactivated within 180 min under VL irradiation. SEM images indicate that bacterial cells were greatly damaged, leading to a severe leakage of intracellular components during photocatalytic inactivation processes. The study concludes that bacterial cell destruction and water disinfection can be achieved using this newly fabricated VLD hybrid photocatalyst.


Assuntos
Desinfecção/métodos , Escherichia coli K12/efeitos da radiação , Luz , Titânio/química , Catálise , Escherichia coli K12/ultraestrutura , Microscopia Eletrônica de Varredura , Nitrilas/química , Processos Fotoquímicos , Águas Residuárias/microbiologia
12.
Mikrobiologiia ; 84(5): 512-28, 2015.
Artigo em Russo | MEDLINE | ID: mdl-27169240

RESUMO

Effect of sublethal doses of physical and chemical stressors (heat shock for 2 h at 45 degrees C and addition of C12-alkylhydroxybenzene, a microbial alarmone) on development of resistance to the subsequent lethal antibiotic attack and the role of the time interval between these treatments were studied on a submerged batch culture of Escherichia coli 12. The interval sufficient for the development of stress response provides for development of temporary adaptive resistance to the antibiotic attack, resulting in increased number of surviving persister cells. The interval below the time required for the stress response potentiates cell death and results in a decreased number of persisters. Heterogeneity of the fractions (10(-4) to 10(-2)% of the intial CFU number) surviving lethal doses of an antibiotic (a mpicillin or ciprofloxacin) was found. Apart from a low number of antibiotic-resistant cells (up to 0.005% of surviving cells), the fractions contained antibiotic-tolerant forms, such as temporarily resistant metabolically adapted cells, long-term persisters, and the cells of slowly growing SCV variants with small colonies (d ≤ 1 mm). Persisters are hypothesized to act as precursors for cystlike dormant cells (CLC), in which the cell differentiation stage is completed and the processes of cell ametabolism (transition to the anabiotic state) are still incomplete.


Assuntos
Adaptação Fisiológica/efeitos dos fármacos , Antibacterianos/farmacologia , Derivados de Benzeno/farmacologia , Farmacorresistência Bacteriana/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Adaptação Fisiológica/fisiologia , Ampicilina/farmacologia , Ciprofloxacina/farmacologia , Contagem de Colônia Microbiana , Farmacorresistência Bacteriana/fisiologia , Escherichia coli K12/fisiologia , Escherichia coli K12/ultraestrutura , Temperatura Alta , Testes de Sensibilidade Microbiana , Viabilidade Microbiana/efeitos dos fármacos , Estresse Fisiológico , Fatores de Tempo
13.
Microbiology (Reading) ; 160(Pt 9): 1964-1973, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25012969

RESUMO

During the colonization of surfaces, Escherichia coli bacteria often encounter DNA-damaging agents and these agents can induce several defence mechanisms. Base excision repair (BER) is dedicated to the repair of oxidative DNA damage caused by reactive oxygen species (ROS) generated by chemical and physical agents or by metabolism. In this work, we have evaluated whether the interaction with an abiotic surface by mutants derived from E. coli K-12 deficient in some enzymes that are part of BER causes DNA damage and associated filamentation. Moreover, we studied the role of endonuclease V (nfi gene; 1506 mutant strain) in biofilm formation. Endonuclease V is an enzyme that is involved in DNA repair of nitrosative lesions. We verified that endonuclease V is involved in biofilm formation. Our results showed more filamentation in the xthA mutant (BW9091) and triple xthA nfo nth mutant (BW535) than in the wild-type strain (AB1157). By contrast, the mutant nfi did not present filamentation in biofilm, although its wild-type strain (1466) showed rare filaments in biofilm. The filamentation of bacterial cells attaching to a surface was a consequence of SOS induction measured by the SOS chromotest. However, biofilm formation depended on the ability of the bacteria to induce the SOS response since the mutant lexA Ind(-) did not induce the SOS response and did not form any biofilm. Oxygen tension was an important factor for the interaction of the BER mutants, since these mutants exhibited decreased quantitative adherence under anaerobic conditions. However, our results showed that the presence or absence of oxygen did not affect the viability of BW9091 and BW535 strains. The nfi mutant and its wild-type did not exhibit decreased biofilm formation under anaerobic conditions. Scanning electron microscopy was also performed on the E. coli K-12 strains that had adhered to the glass, and we observed the presence of a structure similar to an extracellular matrix that depended on the oxygen tension. In conclusion, it was proven that bacterial interaction with abiotic surfaces can lead to SOS induction and associated filamentation. Moreover, we verified that endonuclease V is involved in biofilm formation.


Assuntos
Aderência Bacteriana , Escherichia coli K12/fisiologia , Resposta SOS em Genética , Aerobiose , Anaerobiose , Biofilmes/crescimento & desenvolvimento , Dano ao DNA , Desoxirribonuclease (Dímero de Pirimidina)/metabolismo , Escherichia coli K12/metabolismo , Escherichia coli K12/ultraestrutura , Vidro , Microscopia Eletrônica de Varredura
14.
Bioresour Technol ; 148: 567-73, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24080296

RESUMO

Escherichia coli require mediators or composite anodes for substantial outward electron transfer, >8A/m(2). To what extent non-mediated direct electron transfer from the outer cell envelope to the anode occurs with E. coli is a debated issue. To this end, the redox behaviour of non-exoelectrogenic E. coli K12 was investigated using a bi-cathodic microbial fuel cell. The electromotive force caused by E. coli biofilms mounted 0.2-0.3 V above the value with the surrounding medium. Surprisingly, biofilms that started forming at different times synchronised their EMF even when physically separated. Non-mediated electron transfer from E. coli biofilms increased above background currents passing through the cultivation medium. In some instances, currents were rather high because of a sudden discharge of the medium constituents. Mediated conditions provided similar but more pronounced effects. The combined step-by-step method used allowed a systematic analysis of exoelectronics as encountered in microbial fuel cells.


Assuntos
Fontes de Energia Bioelétrica/microbiologia , Biotecnologia/métodos , Escherichia coli K12/metabolismo , Biofilmes/crescimento & desenvolvimento , Eletricidade , Eletrodos , Transporte de Elétrons , Escherichia coli K12/crescimento & desenvolvimento , Escherichia coli K12/fisiologia , Escherichia coli K12/ultraestrutura , Oxirredução , Plâncton/microbiologia
15.
Biofizika ; 58(3): 507-15, 2013.
Artigo em Russo | MEDLINE | ID: mdl-24159821

RESUMO

The biological activity of copper nanoparticles, able to suppress growth of E. coli cells population under contact interactions, was explored. Three types of samples with oxide layers of various sizes, thickness and composition were used in experiments. It was found out, that an increase in electron density on the external membrane of E. coli correlated with copper nanoparticles suppression capability and with lower activation energy of electron transfer on bacteria. The analysis of experimental data helps to correct conditions for obtaining nanoparticles with certain properties of their surface oxide layers. The character of temperature dependence of electron density reveals the electron type of conductivity in contact area of E. coli and nanoparticles. These results help to find approach to understanding the nature of toxic influence of copper nanoparticles on E. coli cells under contact interaction.


Assuntos
Membrana Celular/metabolismo , Cobre/farmacologia , Escherichia coli K12/crescimento & desenvolvimento , Nanopartículas Metálicas , Membrana Celular/ultraestrutura , Cobre/química , Escherichia coli K12/metabolismo , Escherichia coli K12/ultraestrutura , Oxirredução/efeitos dos fármacos
16.
J Food Prot ; 76(9): 1523-9, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23992496

RESUMO

Bacterial membranes are often thought to be the main targets of the antimicrobial activity of egg white. In order to test this hypothesis, the state of the membranes of Escherichia coli K-12 cells during either bactericidal (45°C) or bacteriostatic (30°C) incubation in egg white at natural alkaline pH was studied by biochemical methods. Namely, the permeability of the outer membrane was evaluated through its ability to incorporate a hydrophobic fluorescent probe (1-N-phenylnaphthylamine), and the permeability of the cytoplasmic membrane was evaluated through the release of a specific intracellular enzyme (ß-galactosidase). The bacteria were observed by atomic force microscopy in order to support the biochemical results. At 45°C, the outer membrane of E. coli K-12 incorporated the hydrophobic probe, suggesting that it was disrupted. In addition, the cytoplasmic ß-galactosidase was released at this temperature. The atomic force microscopy analysis revealed the formation of spheroplasts, which provided further evidence of the cell wall disruption and a progressive release of cellular contents. At 30°C, biochemical and micrographic experiments confirmed that membrane integrity was preserved. These techniques provide a useful approach for studying the mechanisms of bacterial cell death in egg white.


Assuntos
Membrana Celular/ultraestrutura , Clara de Ovo , Escherichia coli K12/ultraestrutura , Conservantes de Alimentos/farmacologia , 1-Naftilamina/análogos & derivados , 1-Naftilamina/metabolismo , Proteínas da Membrana Bacteriana Externa/efeitos dos fármacos , Proteínas da Membrana Bacteriana Externa/ultraestrutura , Membrana Celular/efeitos dos fármacos , Membrana Celular/metabolismo , Permeabilidade da Membrana Celular/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/metabolismo , Microbiologia de Alimentos , Concentração de Íons de Hidrogênio , Esferoplastos/metabolismo , Esferoplastos/ultraestrutura , Temperatura , beta-Galactosidase/metabolismo
17.
Mol Cell ; 48(4): 560-71, 2012 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-23084832

RESUMO

The E. coli chromosome is condensed into insulated regions termed macrodomains (MDs), which are essential for genomic packaging. How chromosomal MDs are specifically organized and compacted is unknown. Here, we report studies revealing the molecular basis for Terminus-containing (Ter) chromosome condensation by the Ter-specific factor MatP. MatP contains a tripartite fold with a four-helix bundle DNA-binding motif, ribbon-helix-helix and C-terminal coiled-coil. Strikingly, MatP-matS structures show that the MatP coiled-coils form bridged tetramers that flexibly link distant matS sites. Atomic force microscopy and electron microscopy studies demonstrate that MatP alone loops DNA. Mutation of key coiled-coil residues destroys looping and causes a loss of Ter condensation in vivo. Thus, these data reveal the molecular basis for a protein-mediated DNA-bridging mechanism that mediates condensation of a large chromosomal domain in enterobacteria.


Assuntos
Proteínas Cromossômicas não Histona/metabolismo , Cromossomos Bacterianos/metabolismo , DNA Bacteriano/metabolismo , Escherichia coli K12/genética , Escherichia coli K12/metabolismo , Proteínas de Escherichia coli/metabolismo , Proteínas Cromossômicas não Histona/química , Proteínas Cromossômicas não Histona/genética , Proteínas Cromossômicas não Histona/ultraestrutura , Cromossomos Bacterianos/genética , Cromossomos Bacterianos/ultraestrutura , DNA Bacteriano/genética , DNA Bacteriano/ultraestrutura , Escherichia coli K12/citologia , Escherichia coli K12/ultraestrutura , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/ultraestrutura , Microscopia de Força Atômica , Microscopia Eletrônica , Modelos Moleculares , Ligação Proteica
18.
Mol Microbiol ; 86(5): 1036-51, 2012 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-23062283

RESUMO

Bacterial peptidoglycan (PG or murein) is a single, large, covalently cross-linked macromolecule and forms a mesh-like sacculus that completely encases the cytoplasmic membrane. Hence, growth of a bacterial cell is intimately coupled to expansion of murein sacculus and requires cleavage of pre-existing cross-links for incorporation of new murein material. Although, conceptualized nearly five decades ago, the mechanism of such essential murein cleavage activity has not been studied so far. Here, we identify three new murein hydrolytic enzymes in Escherichia coli, two (Spr and YdhO) belonging to the NlpC/P60 peptidase superfamily and the third (YebA) to the lysostaphin family of proteins that cleave peptide cross-bridges between glycan chains. We show that these hydrolases are redundantly essential for bacterial growth and viability as a conditional mutant lacking all the three enzymes is unable to incorporate new murein and undergoes rapid lysis upon shift to restrictive conditions. Our results indicate the step of cross-link cleavage as essential for enlargement of the murein sacculus, rendering it a novel target for development of antibacterial therapeutic agents.


Assuntos
Endopeptidases/metabolismo , Escherichia coli K12/enzimologia , Peptidoglicano/metabolismo , Cisteína Endopeptidases/genética , Cisteína Endopeptidases/metabolismo , Endopeptidases/genética , Escherichia coli K12/genética , Escherichia coli K12/crescimento & desenvolvimento , Escherichia coli K12/ultraestrutura , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Microscopia Eletrônica de Varredura
19.
Water Res ; 46(10): 3208-18, 2012 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-22503496

RESUMO

In order to compare the disinfection potential of photocatalysis and photochemistry, the effects of these two processes on bacteria in water were investigated under exposure to UV-A and UV-C. The well-known bacterial model Escherichia coli (E. coli) was used as the experimental organism. Radiation exposure was produced with an HPK 125 W lamp and the standard TiO(2) Degussa P-25 was used as the photocatalyst. Firstly, the impact of photocatalysis and photochemistry on the cultivability of bacterial cells was investigated. UV-A radiation resulted in low deleterious effects on bacterial cultivability but generated colonies of size smaller than average. UV-C photocatalysis demonstrated a greater efficiency than UV-A photocatalysis in altering bacterial cultivability. From a cultivability point of view only, UV-C radiation appeared to be the most deleterious treatment. A rapid epifluorescence staining method using the LIVE/DEAD Bacterial Viability Kit was then used to assess the modifications in bacterial membrane permeability. UV-A radiation did not induce any alterations in bacterial permeability for 420 min of exposure whereas only a few minutes of exposure to UV-C radiation, with the same total radiance intensity, induced total loss of permeability. Moreover, after 20 and 60 min of exposure to UV-C and UV-A photocatalysis respectively, all bacteria lost their membrane integrity, suggesting that the bacterial envelope is the primary target of reactive oxygen species (ROS) generated at the surface of TiO(2) photocatalyst. These results were further confirmed by the formation of malondialdehyde (MDA) during the photocatalytic inactivation of bacterial cells and suggest that destruction of the cell envelope is a key step in the bactericidal action of photocatalysis. The oxidation of bacterial membrane lipids was also correlated with the monitoring of carboxylic acids, which can be considered as representatives of lipid peroxidation by-products. Finally, damages to bacterial morphology induced by UV-C photocatalysis and photochemistry were investigated through Scanning electron microscopy (SEM). Bacterial cells were observed on microscopy pictures at exposure durations corresponding to a loss of cultivability. After 90 min of exposure to UV-C radiation, bacterial cells showed little alteration of their outer membrane whereas they suffered deep deleterious damages under UV-C photocatalysis exposure.


Assuntos
Antibacterianos/metabolismo , Escherichia coli K12/efeitos da radiação , Testes de Sensibilidade Microbiana/métodos , Fotoquímica/métodos , Raios Ultravioleta , Ácidos Carboxílicos/química , Catálise/efeitos da radiação , Membrana Celular/metabolismo , Membrana Celular/efeitos da radiação , Contagem de Colônia Microbiana , Escherichia coli K12/citologia , Escherichia coli K12/crescimento & desenvolvimento , Escherichia coli K12/ultraestrutura , Cinética , Peroxidação de Lipídeos/efeitos da radiação , Malondialdeído/metabolismo , Microscopia de Fluorescência , Fenótipo
20.
J Food Sci ; 77(4): M182-7, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22515246

RESUMO

UNLABELLED: The effects of various sanitizers on the viability and cellular injury to structures of Escherichia coli and Listeria innocua were investigated. A food grade organic acidic formulation (pH 2.5) and acidic, neutral, and basic electrolyzed water [AEW (pH 2.7, oxidation reduction potential; ORP: 1100 mV, free available chlorine; FAC: 150 ppm), NEW (pH 6.9, ORP: 840 mV, FAC: 150 ppm), BEW (pH 11.6, ORP: -810 mV)] were used to treat E. coli and L. innocua cells. After 10 min of exposure to the sanitizers, changes to the bacterial numbers and cell structures were evaluated by plate counting and transmission electron microscopy (TEM), respectively. It was concluded from the results that the sanitizers reduced the E. coli cells between 2 and 3 log CFU/mL. Except for the BEW treatment, reductions in L. innocua population were greater (>1 log CFU/mL) than that of E. coli for all treatments. Data from the TEM showed that all sanitizers caused changes to the cell envelope and cytoplasm of both organisms. However, smaller changes were observed for L. innocua cells. Decrease in the integrity of the cell envelope and aggregation of the cytoplasmic components appeared to be mainly because of exposure to the sanitizers. The organic acid formulation and AEW were the most effective sanitizers against bacterial cells, indicating that penetration of acidic substances effectively caused the cell inactivation. PRACTICAL APPLICATION: An understanding of the method in which E-water and an acidic sanitizer cause injury to E. coli and L. innocua would be helpful in selecting an effective chemical agent as a food safety tool. This will allow a scientist to target similar microorganisms such as food borne bacteria with structures that are vulnerable to the sanitizer.


Assuntos
Antibacterianos/farmacologia , Membrana Celular/efeitos dos fármacos , Citoplasma/efeitos dos fármacos , Escherichia coli K12/efeitos dos fármacos , Escherichia coli K12/ultraestrutura , Listeria/efeitos dos fármacos , Listeria/ultraestrutura , Membrana Celular/ultraestrutura , Cloro/análise , Contagem de Colônia Microbiana , Citoplasma/ultraestrutura , Desinfetantes/farmacologia , Técnicas Eletroquímicas , Escherichia coli O157/efeitos dos fármacos , Escherichia coli O157/crescimento & desenvolvimento , Escherichia coli O157/ultraestrutura , Serviços de Alimentação , Doenças Transmitidas por Alimentos/prevenção & controle , Concentração de Íons de Hidrogênio , Ácido Hipocloroso/farmacologia , Listeria/crescimento & desenvolvimento , Viabilidade Microbiana/efeitos dos fármacos , Microscopia Eletrônica de Transmissão , Oxirredução , Tensoativos/farmacologia , Água/química
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