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1.
Zoology (Jena) ; 148: 125946, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34388442

RESUMO

Pioneering fieldwork identified the existence of three feeding groups in vultures: gulpers, rippers and scrappers. Gulpers engulf soft tissue from carcasses and rippers tear off pieces of tough tissue (skin, tendons, muscle), whereas scrappers peck on small pieces of meat they find on and around carcasses. It has been shown that these feeding preferences are reflected in the anatomy of the skull and neck. Here, we demonstrate that these three feeding groups also emerge when body core and limb bones are added to the analysis. However, the resulting classification differs from that which is based on skull morphology for three species, namely Gypaetus barbatus (Linnaeus, 1758), Gypohierax angolensis (Gmelin, 1788) and Gyps indicus (Scopoli, 1786). The proposed classification would improve the interrelationship between form and feeding habits in vultures. Moreover, the results of this study reinforce the value of the categorisation system introduced by Kruuk (1967), and expanded by König (1974, 1983), Houston (1988) and Hertel (1994), as it would affect not only the skull morphology but the whole-body architecture.


Assuntos
Falconiformes/anatomia & histologia , Falconiformes/fisiologia , Comportamento Alimentar/fisiologia , Crânio/anatomia & histologia , Animais , Falconiformes/classificação
2.
Sci Rep ; 11(1): 17269, 2021 08 26.
Artigo em Inglês | MEDLINE | ID: mdl-34446769

RESUMO

Rehabilitation centres help injured animals to recover and return back to the wild. This study aimed to analyse trends in intake and outcomes for the common kestrels (Falco tinnunculus) admitted into rehabilitation centres in the Czech Republic. From 2010 to 2019, a total of 12,923 kestrels were admitted to 34 rehabilitation centres with an increasing trend (rSp = 0.7697, P < 0.01) being found during the monitored period. Subadult kestrels (34.70%) and kestrels injured by power lines (26.57%) were most often admitted. Most kestrels in the rehabilitation centres died or had to be euthanized (81.66%), only 15.90% of the birds could be released back into the wild. The median length of stay in rehabilitation centres for kestrels that were subsequently released was 35 days. Considering survival rates, the most critical threat to kestrels was poisoning (100% of the cases resulted in death) but mortality of the kestrels admitted for most other reasons also exceeded 80%. Given the low success rate of the care of kestrels in rehabilitation centres and the relatively small proportion returned to the wild, it is essential to eliminate the causes leading to their admission, that is, to protect their natural habitats and to prevent unnecessary capture.


Assuntos
Animais Selvagens/crescimento & desenvolvimento , Doenças das Aves/terapia , Falconiformes/crescimento & desenvolvimento , Hospitais Veterinários/estatística & dados numéricos , Administração da Prática da Medicina Veterinária/estatística & dados numéricos , Criação de Animais Domésticos/métodos , Criação de Animais Domésticos/estatística & dados numéricos , Animais , Animais Selvagens/classificação , Animais Selvagens/lesões , Doenças das Aves/diagnóstico , Conservação dos Recursos Naturais/métodos , Conservação dos Recursos Naturais/estatística & dados numéricos , República Tcheca , Falconiformes/classificação , Falconiformes/lesões , Fatores de Tempo , Resultado do Tratamento
3.
Genes (Basel) ; 12(5)2021 04 29.
Artigo em Inglês | MEDLINE | ID: mdl-33946707

RESUMO

Microsatellite DNA analysis is a powerful tool for assessing population genetics. The main aim of this study was to assess the genetic potential of the peregrine falcon population covered by the restitution program. We characterized individuals from breeders that set their birds for release into the wild and birds that have been reintroduced in previous years. This was done using a well-known microsatellite panel designed for the peregrine falcon containing 10 markers. We calculated the genetic distance between individuals and populations using the UPGMA (unweighted pair group method with arithmetic mean) method and then performed a Principal Coordinates Analysis (PCoA) and constructed phylogenetic trees, to visualize the results. In addition, we used the Bayesian clustering method, assuming 1-15 hypothetical populations, to find the model that best fit the data. Units were segregated into groups regardless of the country of origin, and the number of alleles and observed heterozygosity were different in different breeding groups. The wild and captive populations were grouped independent of the original population.


Assuntos
Falconiformes/genética , Genótipo , Repetições de Microssatélites , Animais , Ecossistema , Espécies em Perigo de Extinção , Falconiformes/classificação , Falconiformes/fisiologia , Técnicas de Genotipagem/métodos , Técnicas de Genotipagem/normas , Filogenia , Polônia , Polimorfismo Genético , Padrões de Referência
4.
Curr Biol ; 31(13): 2939-2946.e5, 2021 07 12.
Artigo em Inglês | MEDLINE | ID: mdl-33989525

RESUMO

Due to their small population sizes, threatened and endangered species frequently suffer from a lack of genetic diversity, potentially leading to inbreeding depression and reduced adaptability.1 During the latter half of the twentieth century, North America's largest soaring bird,2 the California condor (Gymnogyps californianus; Critically Endangered3), briefly went extinct in the wild. Though condors once ranged throughout North America, by 1982 only 22 individuals remained. Following decades of captive breeding and release efforts, there are now >300 free-flying wild condors and ∼200 in captivity. The condor's recent near-extinction from lead poisoning, poaching, and loss of habitat is well documented,4 but much about its history remains obscure. To fill this gap and aid future management of the species, we produced a high-quality chromosome-length genome assembly for the California condor and analyzed its genome-wide diversity. For comparison, we also examined the genomes of two close relatives: the Andean condor (Vultur gryphus; Vulnerable3) and the turkey vulture (Cathartes aura; Least Concern3). The genomes of all three species show evidence of historic population declines. Interestingly, the California condor genome retains a high degree of variation, which our analyses reveal is a legacy of its historically high abundance. Correlations between genome-wide diversity and recombination rate further suggest a history of purifying selection against linked deleterious alleles, boding well for future restoration. We show how both long-term evolutionary forces and recent inbreeding have shaped the genome of the California condor, and provide crucial genomic resources to enable future research and conservation.


Assuntos
Espécies em Perigo de Extinção , Falconiformes/classificação , Falconiformes/genética , Genoma/genética , Animais , Ecossistema , Feminino , Genômica , Densidade Demográfica
5.
Sci Rep ; 10(1): 20394, 2020 11 23.
Artigo em Inglês | MEDLINE | ID: mdl-33230239

RESUMO

The Griffon vulture was once a widespread species across the region of Southeast Europe, but it is now endangered and in some parts is completely extinct. In the Balkan Peninsula the largest Griffon vulture inland population inhabits the territory of Serbia. We present, for the first time, the genetic data of this valuable population that could be a source for future reintroduction programs planned in South-eastern Europe. To characterize the genetic structure of this population we used microsatellite markers from ten loci. Blood samples were collected from 57 chicks directly in the nests during the ongoing monitoring program. We performed a comparative analysis of the obtained data with the existing data from three native populations from French Pyrenees, Croatia, and Israel. We have assessed the genetic differentiation between different native populations and determined the existence of two genetic clusters that differentiate the populations from the Balkan and Iberian Peninsulas. Furthermore, we analysed whether the recent bottleneck events influenced the genetic structure of the populations studied, and we found that all native populations experienced a recent bottleneck event, and that the population of Israel was the least affected. Nevertheless, the parameters of genetic diversity suggest that all analysed populations have retained a similar level of genetic diversity and that the Griffon vulture population from Serbia exhibits the highest value for private alleles. The results of this study suggest that the Griffon vulture populations of the Balkan Peninsula are genetically differentiated from the populations of the Iberian Peninsula, which is an important information for future reintroduction strategies.


Assuntos
Conservação dos Recursos Naturais , Falconiformes/genética , Deriva Genética , Variação Genética , Animais , Croácia , Falconiformes/classificação , Feminino , França , Loci Gênicos , Israel , Masculino , Repetições de Microssatélites , Filogeografia , Dinâmica Populacional/tendências , Sérvia
6.
Mol Biol Rep ; 47(11): 8377-8383, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-33099758

RESUMO

Merlins, Falco columbarius, breed throughout temperate and high latitude habitats in Asia, Europe, and North America. Like peregrine falcons, F. peregrinus, merlins underwent population declines during the mid-to-late twentieth century, due to organochlorine-based contamination, and have subsequently recovered, at least in North American populations. To better understand levels of genetic diversity and population structuring in contemporary populations and to assess the impact of the twentieth century decline, we used genomic data archived in public databases and constructed genomic libraries to isolate and characterize a suite of 17 microsatellite markers for use in merlins. We also conducted cross-amplification experiments to determine the markers' utility in peregrine falcons and gyrfalcons, F. rusticolus. These markers provide a valuable addition to marker suites that can be used to determine individual identity and conduct genetic analyses on merlins and congeners.


Assuntos
Ecossistema , Falconiformes/genética , Variação Genética , Repetições de Microssatélites/genética , Alelos , Animais , Ásia , DNA/genética , DNA/isolamento & purificação , Europa (Continente) , Falconiformes/classificação , Genética Populacional/métodos , Biblioteca Genômica , Genótipo , América do Norte , Especificidade da Espécie
7.
Proc Natl Acad Sci U S A ; 117(28): 16418-16423, 2020 07 14.
Artigo em Inglês | MEDLINE | ID: mdl-32601195

RESUMO

Toxicants such as organochlorine insecticides, lead ammunition, and veterinary drugs have caused severe wildlife poisoning, pushing the populations of several apex species to the edge of extinction. These prime cases epitomize the serious threat that wildlife poisoning poses to biodiversity. Much of the evidence on population effects of wildlife poisoning rests on assessments conducted at an individual level, from which population-level effects are inferred. Contrastingly, we demonstrate a straightforward relationship between poison-induced individual mortality and population changes in the threatened red kite (Milvus milvus). By linking field data of 1,075 poisoned red kites to changes in occupancy and abundance across 274 sites (10 × 10-km squares) over a 20-y time frame, we show a clear relationship between red kite poisoning and the decline of its breeding population in Spain, including local extinctions. Our results further support the species listing as endangered, after a breeding population decline of 31% to 43% in two decades of this once-abundant raptor. Given that poisoning threatens the global populations of more than 2,600 animal species worldwide, a greater understanding of its population-level effects may aid biodiversity conservation through increased regulatory control of chemical substances. Our results illustrate the great potential of long-term and large-scale on-ground monitoring to assist in this task.


Assuntos
Falconiformes/fisiologia , Inseticidas/toxicidade , Drogas Veterinárias/toxicidade , Animais , Animais Selvagens/classificação , Animais Selvagens/crescimento & desenvolvimento , Animais Selvagens/fisiologia , Biodiversidade , Cruzamento , Conservação dos Recursos Naturais , Poluentes Ambientais/toxicidade , Falconiformes/classificação , Falconiformes/crescimento & desenvolvimento , Feminino , Masculino , Dinâmica Populacional
8.
Sci Rep ; 10(1): 2430, 2020 02 12.
Artigo em Inglês | MEDLINE | ID: mdl-32051486

RESUMO

Competition for limiting natural resources generates complex networks of relationships between individuals, both at the intra- and interspecific levels, establishing hierarchical scenarios among different population groups. Within obligate scavengers, and especially in vultures, the coevolutionary mechanisms operating during carrion exploitation are highly specialized and determined in part by agonistic behavior resulting in intra-guild hierarchies. This paper revisits the behavioral and hierarchical organization within the guild of European vultures, on the basis of their agonistic activities during carrion exploitation. We used a dataset distilled from high-quality videorecordings of competitive interactions among the four European vulture species during feeding events. We found a despotic dominance gradient from the larger species to smaller ones, and from the adults to subadults and juveniles, following an age and body size-based linear pattern. The four studied species, and to some extent age classes, show despotic dominance and organization of their guild exerting differential selection to different parts of the carrion. The abundance of these parts could ultimately condition the level of agonistic interactions. We discuss the behavioral organization and the relationship of hierarchies according to the feeding behavior and prey selection, by comparing with other scavenger guilds.


Assuntos
Envelhecimento , Tamanho Corporal , Falconiformes/fisiologia , Agressão , Animais , Comportamento Animal , Comportamento Competitivo , Falconiformes/classificação , Feminino , Masculino , Predomínio Social
9.
Mol Phylogenet Evol ; 140: 106576, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31381968

RESUMO

Since the late Pleistocene humans have caused the extinction of species across our planet. Placing these extinct species in the tree of life with genetic data is essential to understanding the ecological and evolutionary implications of these losses. While ancient DNA (aDNA) techniques have advanced rapidly in recent decades, aDNA from tropical species, especially birds, has been historically difficult to obtain, leaving a gap in our knowledge of the extinction processes that have influenced current distributions and biodiversity. Here we report the recovery of a nearly complete mitochondrial genome from a 2,500 year old (late Holocene) bone of an extinct species of bird, Caracara creightoni, recovered from the anoxic saltwater environment of a blue hole in the Bahamas. Our results suggest that this extinct species is sister (1.6% sequence divergence) to a clade containing the extant C. cheriway and C. plancus. Caracara creightoni shared a common ancestor with these extant species during the Pleistocene (1.2-0.4 MYA) and presumably survived on Cuba when the Bahamas was mostly underwater during Quaternary interglacial intervals (periods of high sea levels). Tropical blue holes have been collecting animals for thousands of years and will continue to improve our understanding of faunal extinctions and distributions. In particular, new aDNA techniques combined with radiocarbon dating from Holocene Bahamian fossils will allow us to place other extinct (species-level loss) and extirpated (population-level loss) vertebrate taxa in improved phylogenetic, evolutionary, biogeographic, and temporal contexts.


Assuntos
DNA Antigo/análise , Extinção Biológica , Falconiformes/classificação , Falconiformes/genética , Fósseis , Filogenia , Animais , Sequência de Bases , Aves/genética , Região do Caribe , Genoma Mitocondrial , Geografia
10.
Sci Rep ; 9(1): 5536, 2019 04 02.
Artigo em Inglês | MEDLINE | ID: mdl-30940898

RESUMO

Globally, vulture species are experiencing major population declines. The southern African Cape vulture (Gyps coprotheres) has undergone severe population collapse which has led to a listing of Endangered by the IUCN. Here, a comprehensive genetic survey of G. coprotheres is conducted using microsatellite markers. Analyses revealed an overall reduction in heterozygosity compared to other vulture species that occur in South Africa (Gypaetus barbatus, Necrosyrtes monachus, and Gyps africanus). Bayesian clustering analysis and principal coordinate analysis identified shallow, subtle population structuring across South Africa. This provides some support for regional natal philopatry in this species. Despite recent reductions in population size, a genetic bottleneck was not detected by the genetic data. The G. coprotheres, however, did show a significant deficiency of overall heterozygosity. This, coupled with the elevated levels of inbreeding and reduced effective population size, suggests that G. coprotheres is genetically depauperate. Given that genetic variation is considered a prerequisite for adaptation and population health, the low genetic diversity within G. coprotheres populations is of concern and has implications for the future management and conservation of this species.


Assuntos
Falconiformes/genética , Variação Genética , Repetições de Microssatélites , Animais , Teorema de Bayes , Espécies em Perigo de Extinção , Evolução Molecular , Falconiformes/classificação , Densidade Demográfica , África do Sul
11.
BMC Genomics ; 19(1): 233, 2018 Apr 04.
Artigo em Inglês | MEDLINE | ID: mdl-29618317

RESUMO

BACKGROUND: Management requires a robust understanding of between- and within-species genetic variability, however such data are still lacking in many species. For example, although multiple population genetics studies of the peregrine falcon (Falco peregrinus) have been conducted, no similar studies have been done of the closely-related prairie falcon (F. mexicanus) and it is unclear how much genetic variation and population structure exists across the species' range. Furthermore, the phylogenetic relationship of F. mexicanus relative to other falcon species is contested. We utilized a genomics approach (i.e., genome sequencing and assembly followed by single nucleotide polymorphism genotyping) to rapidly address these gaps in knowledge. RESULTS: We sequenced the genome of a single female prairie falcon and generated a 1.17 Gb (gigabases) draft genome assembly. We generated maximum likelihood phylogenetic trees using complete mitochondrial genomes as well as nuclear protein-coding genes. This process provided evidence that F. mexicanus is an outgroup to the clade that includes the peregrine falcon and members of the subgenus Hierofalco. We annotated > 16,000 genes and almost 600,000 high-quality single nucleotide polymorphisms (SNPs) in the nuclear genome, providing the raw material for a SNP assay design featuring > 140 gene-associated markers and a molecular-sexing marker. We subsequently genotyped ~ 100 individuals from California (including the San Francisco East Bay Area, Pinnacles National Park and the Mojave Desert) and Idaho (Snake River Birds of Prey National Conservation Area). We tested for population structure and found evidence that individuals sampled in California and Idaho represent a single panmictic population. CONCLUSIONS: Our study illustrates how genomic resources can rapidly shed light on genetic variability in understudied species and resolve phylogenetic relationships. Furthermore, we found evidence of a single, randomly mating population of prairie falcons across our sampling locations. Prairie falcons are highly mobile and relatively rare long-distance dispersal events may promote gene flow throughout the range. As such, California's prairie falcons might be managed as a single population, indicating that management actions undertaken to benefit the species at the local level have the potential to influence the species as a whole.


Assuntos
Proteínas Aviárias/genética , Falconiformes/classificação , Polimorfismo de Nucleotídeo Único , Sequenciamento Completo do Genoma/veterinária , Animais , California , Falconiformes/genética , Feminino , Genética Populacional , Idaho , Mitocôndrias/genética , Filogenia , Filogeografia
12.
PLoS One ; 12(11): e0188185, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29149202

RESUMO

Subspecies relationships within the peregrine falcon (Falco peregrinus) have been long debated because of the polytypic nature of melanin-based plumage characteristics used in subspecies designations and potential differentiation of local subpopulations due to philopatry. In North America, understanding the evolutionary relationships among subspecies may have been further complicated by the introduction of captive bred peregrines originating from non-native stock, as part of recovery efforts associated with mid 20th century population declines resulting from organochloride pollution. Alaska hosts all three nominal subspecies of North American peregrine falcons-F. p. tundrius, anatum, and pealei-for which distributions in Alaska are broadly associated with nesting locales within Arctic, boreal, and south coastal maritime habitats, respectively. Unlike elsewhere, populations of peregrine falcon in Alaska were not augmented by captive-bred birds during the late 20th century recovery efforts. Population genetic differentiation analyses of peregrine populations in Alaska, based on sequence data from the mitochondrial DNA control region and fragment data from microsatellite loci, failed to uncover genetic distinction between populations of peregrines occupying Arctic and boreal Alaskan locales. However, the maritime subspecies, pealei, was genetically differentiated from Arctic and boreal populations, and substructured into eastern and western populations. Levels of interpopulational gene flow between anatum and tundrius were generally higher than between pealei and either anatum or tundrius. Estimates based on both marker types revealed gene flow between augmented Canadian populations and unaugmented Alaskan populations. While we make no attempt at formal taxonomic revision, our data suggest that peregrine falcons occupying habitats in Alaska and the North Pacific coast of North America belong to two distinct regional groupings-a coastal grouping (pealei) and a boreal/Arctic grouping (currently anatum and tundrius)-each comprised of discrete populations that are variously intra-regionally connected.


Assuntos
DNA Mitocondrial/genética , Falconiformes/genética , Fluxo Gênico , Especiação Genética , Filogenia , Alaska , Animais , Cruzamento , Canadá , Falconiformes/classificação , Plumas/anatomia & histologia , Feminino , Loci Gênicos , Variação Genética , Masculino , Repetições de Microssatélites , Filogeografia , Pigmentação/genética
13.
Mol Phylogenet Evol ; 115: 1-6, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28690127

RESUMO

Nuclear copies of mitochondrial genes (numts) are a well-known feature of eukaryotic genomes and a concern in systematics, as they can mislead phylogenetic inferences when inadvertently used. Studies on avian numts initially based on the chicken genome suggest that numts may be uncommon and relatively short among birds. Here we ask how common numts are in falcons, based on recently sequenced genomes of the Saker falcon (Falco cherrug) and Peregrine falcon (F. peregrinus). We identified numts by BLASTN searches and then extracted CYTB, ND2 and COI sequences from them, which were then used for phylogeny inference along with several sequences from other species in Falconiformes. Our results indicate that avian numts may be much more frequent and longer than previously thought. Phylogenetic inferences revealed multiple independent nuclear insertions throughout the history of the Falconiformes, including cases of sequences available in public databases and wrongly identified as authentic mtDNA. New sequencing technologies and ongoing efforts for whole genome sequencing will provide exciting opportunities for avian numt research in the near future.


Assuntos
Falconiformes/classificação , Animais , Citocromos b/classificação , Citocromos b/genética , Complexo IV da Cadeia de Transporte de Elétrons/classificação , Complexo IV da Cadeia de Transporte de Elétrons/genética , Mitocôndrias/genética , NADH Desidrogenase/classificação , NADH Desidrogenase/genética , Filogenia
14.
Emerg Microbes Infect ; 6(2): e9, 2017 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-28223683

RESUMO

The Old World vulture may carry and spread pathogens for emerging infections since they feed on the carcasses of dead animals and participate in the sky burials of humans, some of whom have died from communicable diseases. Therefore, we studied the precise fecal microbiome of the Old World vulture with metataxonomics, integrating the high-throughput sequencing of almost full-length small subunit ribosomal RNA (16S rRNA) gene amplicons in tandem with the operational phylogenetic unit (OPU) analysis strategy. Nine vultures of three species were sampled using rectal swabs on the Qinghai-Tibet Plateau, China. Using the Pacific Biosciences sequencing platform, we obtained 54 135 high-quality reads of 16S rRNA amplicons with an average of 1442±6.9 bp in length and 6015±1058 reads per vulture. Those sequences were classified into 314 OPUs, including 102 known species, 50 yet to be described species and 161 unknown new lineages of uncultured representatives. Forty-five species have been reported to be responsible for human outbreaks or infections, and 23 yet to be described species belong to genera that include pathogenic species. Only six species were common to all vultures. Clostridium perfringens was the most abundant and present in all vultures, accounting for 30.8% of the total reads. Therefore, using the new technology, we found that vultures are an important reservoir for C. perfringens as evidenced by the isolation of 107 strains encoding for virulence genes, representing 45 sequence types. Our study suggests that the soil-related C. perfringens and other pathogens could have a reservoir in vultures and other animals.


Assuntos
Infecções por Clostridium/transmissão , Clostridium perfringens/genética , Código de Barras de DNA Taxonômico , Reservatórios de Doenças/veterinária , Falconiformes/microbiologia , Filogenia , Animais , Proteínas Aviárias/genética , Clostridium perfringens/classificação , DNA Bacteriano/genética , Complexo IV da Cadeia de Transporte de Elétrons/genética , Falconiformes/classificação , Falconiformes/genética , Fezes/microbiologia , Microbioma Gastrointestinal/genética , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Consórcios Microbianos/genética , RNA Ribossômico 16S/genética , Tibet
15.
Mol Ecol Resour ; 17(2): 153-160, 2017 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-27235333

RESUMO

PCR-based methods are the most common technique for sex determination of birds. Although these methods are fast, easy and accurate, they still require special facilities that preclude their application outdoors. Consequently, there is a time lag between sampling and obtaining results that impedes researchers to take decisions in situ and in real time considering individuals' sex. We present an outdoor technique for sex determination of birds based on the amplification of the duplicated sex-chromosome-specific gene Chromo-Helicase-DNA binding protein using a loop-mediated isothermal amplification (LAMP). We tested our method on Griffon Vulture (Gyps fulvus), Egyptian Vulture (Neophron percnopterus) and Black Kite (Milvus migrans) (family Accipitridae). We introduce the first fieldwork procedure for sex determination of animals in the wild, successfully applied to raptor species of three different subfamilies using the same specific LAMP primers. This molecular technique can be deployed directly in sampling areas because it only needs a voltage inverter to adapt a thermo-block to a car lighter and results can be obtained by the unaided eye based on colour change within the reaction tubes. Primers and reagents are prepared in advance to facilitate their storage at room temperature. We provide detailed guidelines how to implement this procedure, which is simpler (no electrophoresis required), cheaper and faster (results in c. 90 min) than PCR-based laboratory methods. Our successful cross-species application across three different raptor subfamilies posits our set of markers as a promising tool for molecular sexing of other raptor families and our field protocol extensible to all bird species.


Assuntos
Falconiformes/classificação , Falconiformes/genética , Técnicas de Amplificação de Ácido Nucleico/métodos , Análise para Determinação do Sexo/métodos , Animais , Primers do DNA/genética , Proteínas de Ligação a DNA/genética , Técnicas de Amplificação de Ácido Nucleico/tendências , Análise de Sequência de DNA , Cromossomos Sexuais
16.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(3): 1648-9, 2016 05.
Artigo em Inglês | MEDLINE | ID: mdl-25208181

RESUMO

In this study, the complete mitochondrial genome of the Sparrowhawk (Accipiter nisus) was sequenced and reported for the first time using muscle tissue. Sequence analysis showed its genome structure was in accordance with other Accipitridae species, which contains 2 rRNA genes, 22 tRNA genes, 13 protein-coding genes, 1 control region and 1 extra pseudo-control region, and its total length is 18,647 bp. An extra nucleotide (C) was determined at position 174 relative to the ND3 sequence, and an insertion of three adenines was found directly preceding the stop codon of Cytb.


Assuntos
Falconiformes/genética , Genoma Mitocondrial/genética , Animais , Códon de Terminação/genética , DNA Mitocondrial/genética , Falconiformes/classificação , Análise de Sequência de DNA
17.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3226-7, 2016 09.
Artigo em Inglês | MEDLINE | ID: mdl-25714141

RESUMO

The Falco cherrug (Saker falcon) is a large bird of prey. In this article, the complete mitochondrial genome of F. cherrug has been determined for the first time. The mitogenome (18,059 bp) comprised 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 1 control region. Most protein-coding genes started with an ATG or ATA codon except for COI, which initiated with nontypical start codon of GTG instead, and terminated with the typical stop codon (TAA/TAG/AGA/AGG) or a single T. Two tandem repeats were identified in the control region, which was almost identical to Falco peregrinus, and the length of these two repeats are 204 bp and 291 bp, respectively.


Assuntos
Falconiformes/genética , Genoma Mitocondrial , Animais , Composição de Bases , Códon , Falconiformes/classificação , Genes Mitocondriais , Tamanho do Genoma , Fases de Leitura Aberta , Análise de Sequência de DNA , Sequências de Repetição em Tandem , Sequenciamento Completo do Genoma
18.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(4): 2385-6, 2016 07.
Artigo em Inglês | MEDLINE | ID: mdl-26006284

RESUMO

Falconiformes include most of the predatory birds, they play crucial role in maintaining the balance of ecology system. To further illustrate the phylogenetic status for the species of Falconiformes, the entire mitochondrial DNA (mtDNA) genome of Falco naumanni was amplified and sequenced, further phylogenetic analysis was performed by incorporating with other 8 entire mtDNA genomes representing 8 species of predatory birds by taking the Apus apus and Haematopus ater as out-groups. Our results indicated that the mtDNA genome of F. naumanni includes 17,370 base pairs in length, which has the similar organization and gene order with other mtDNA genomes of the species belonging to Falconiformes. Further phylogenetic analyses supported that the F. naumanni clustered with other species of Falconidae, which formed the sister group of Accipitridae, Cathartes aura located at the basal position with Haematopus ater. In addition, Pandion haliaetus was clustered with other species of Accipitridae, which was conflict with the traditional classification system by taking P. haliaetus as an independent Familia of Falconidae.


Assuntos
Falconiformes/classificação , Falconiformes/genética , Genoma Mitocondrial , Animais , Composição de Bases , Genes Mitocondriais , Tamanho do Genoma , Fases de Leitura Aberta , Filogenia , Análise de Sequência de DNA , Sequenciamento Completo do Genoma
19.
BMC Evol Biol ; 15: 255, 2015 Nov 17.
Artigo em Inglês | MEDLINE | ID: mdl-26577665

RESUMO

BACKGROUND: The Osprey (Pandion haliaetus) is one of only six bird species with an almost world-wide distribution. We aimed at clarifying its phylogeographic structure and elucidating its taxonomic status (as it is currently separated into four subspecies). We tested six biogeographical scenarios to explain how the species' distribution and differentiation took place in the past and how such a specialized raptor was able to colonize most of the globe. RESULTS: Using two mitochondrial genes (cyt b and ND2), the Osprey appeared structured into four genetic groups representing quasi non-overlapping geographical regions. The group Indo-Australasia corresponds to the cristatus ssp, as well as the group Europe-Africa to the haliaetus ssp. In the Americas, we found a single lineage for both carolinensis and ridgwayi ssp, whereas in north-east Asia (Siberia and Japan), we discovered a fourth new lineage. The four lineages are well differentiated, contrasting with the low genetic variability observed within each clade. Historical demographic reconstructions suggested that three of the four lineages experienced stable trends or slight demographic increases. Molecular dating estimates the initial split between lineages at about 1.16 Ma ago, in the Early Pleistocene. CONCLUSIONS: Our biogeographical inference suggests a pattern of colonization from the American continent towards the Old World. Populations of the Palearctic would represent the last outcomes of this colonization. At a global scale the Osprey complex may be composed of four different Evolutionary Significant Units, which should be treated as specific management units. Our study brought essential genetic clarifications, which have implications for conservation strategies in identifying distinct lineages across which birds should not be artificially moved through exchange/reintroduction schemes.


Assuntos
Falconiformes/classificação , Falconiformes/genética , Filogeografia , Animais , Evolução Biológica , Demografia , Genes Mitocondriais , Filogenia
20.
BMC Evol Biol ; 15: 205, 2015 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-26409465

RESUMO

BACKGROUND: Previous cross-species painting studies with probes from chicken (Gallus gallus) chromosomes 1-10 and a paint pool of nineteen microchromosomes have revealed that the drastic karyotypic reorganization in Accipitridae is due to extensive synteny disruptions and associations. However, the number of synteny association events and identities of microchromosomes involved in such synteny associations remain undefined, due to the lack of paint probes derived from individual chicken microchromosomes. Moreover, no genome-wide homology map between Accipitridae species and other avian species with atypical karyotype organization has been reported till now, and the karyotype evolution within Accipitriformes remains unclear. RESULTS: To delineate the synteny-conserved segments in Accipitridae, a set of painting probes for the griffon vulture, Gyps fulvus (2n = 66) was generated from flow-sorted chromosomes. Together with previous generated probes from the stone curlew, Burhinus oedicnemus (2n = 42), a Charadriiformes species with atypical karyotype organization, we conducted multidirectional chromosome painting, including reciprocal chromosome painting between B. oedicnemus and G. fulvus and cross-species chromosome painting between B. oedicnemus and two accipitrid species (the Himalayan griffon, G. himalayensis 2n = 66, and the common buzzard, Buteo buteo, 2n = 68). In doing so, genome-wide homology maps between B. oedicnemus and three Accipitridae species were established. From there, a cladistic analysis using chromosomal characters and mapping of chromosomal changes on a consensus molecular phylogeny were conducted in order to search for cytogenetic signatures for different lineages within Accipitriformes. CONCLUSION: Our study confirmed that the genomes of the diurnal birds of prey, especially the genomes of species in Accipitriformes excluding Cathartidae, have been extensively reshuffled when compared to other bird lineages. The chromosomal rearrangements involved include both fusions and fissions. Our chromosome painting data indicated that the Palearctic common buzzard (BBU) shared several common chromosomal rearrangements with some Old World vultures, and was found to be more closely related to other Accipitridae than to Neotropical buteonine raptors from the karyotypic perspective. Using both a chromosome-based cladistic analysis as well as by mapping of chromosomal differences onto a molecular-based phylogenetic tree, we revealed a number of potential cytogenetic signatures that support the clade of Pandionidae (PHA) + Accipitridae. In addition, our cladistic analysis using chromosomal characters appears to support the placement of osprey (PHA) in Accipitridae.


Assuntos
Evolução Biológica , Coloração Cromossômica , Falconiformes/genética , Animais , Galinhas/genética , Cromossomos , Falconiformes/classificação , Genoma , Cariótipo , Filogenia , Sintenia
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