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1.
Sci Rep ; 12(1): 11357, 2022 09 05.
Artigo em Inglês | MEDLINE | ID: mdl-36064952

RESUMO

Chickpea is the most important nutrient-rich grain legume crop in the world. A diverse core set of 147 chickpea genotypes was genotyped with a Axiom(®)50K CicerSNP array and trait phenotyped in two different environments for four seed micronutrients (Zn, Cu, Fe and Mn). The trait data and high-throughput 50K SNP genotypic data were used for the genome-wide association study (GWAS). The study led to the discovery of genes/QTLs for seed Zn, Cu, Fe and Mn, concentrations in chickpea. The analysis of seed micronutrient data revealed significant differences for all four micronutrient concentrations (P ≤ 0.05). The mean concentrations of seed Zn, Cu, Fe and Mn pooled over the 2 years were 45.9 ppm, 63.8 ppm 146.1 ppm, and 27.0 ppm, respectively. The analysis of results led to the identification of 35 SNPs significantly associated with seed Zn, Cu, Fe and Mn concentrations. Among these 35 marker-trait associations (MTAs), 5 were stable (consistently identified in different environments), 6 were major (explaining more than 15% of the phenotypic variation for an individual trait) and 3 were both major and stable MTAs. A set of 6 MTAs, MTAs (3 for Mn, 2 for Fe, and 1 for Cu) reported by us during the present study have been also reported in the same/almost same genomic regions in earlier studies and therefore declared as validated MTAs. The stable, major and validated MTAs identified during the present study will prove useful in future chickpea molecular breeding programs aimed at enhancing the seed nutrient density of chickpea.


Assuntos
Cicer , Oligoelementos , Cicer/genética , Estudo de Associação Genômica Ampla , Micronutrientes/genética , Polimorfismo de Nucleotídeo Único , Sementes/genética
2.
PeerJ ; 10: e13629, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35818359

RESUMO

Micronutrients, including vitamins, minerals, and other bioactive compounds, have tremendous impacts on human health. Much progress has been made in improving the micronutrient content of inbred lines in various crops through biofortified breeding. However, biofortified breeding still falls short for the rapid generation of high-yielding hybrids rich in multiple micronutrients. Here, we bred multi-biofortified sweet corn hybrids efficiently through marker-assisted selection. Screening by molecular markers for vitamin E and folic acid, we obtained 15 inbred lines carrying favorable alleles (six for vitamin E, nine for folic acid, and three for both). Multiple biofortified corn hybrids were developed through crossing and genetic diversity analysis.


Assuntos
Biofortificação , Alimentos Fortificados , Glutamato Formimidoiltransferase , Micronutrientes , Biofortificação/métodos , Ácido Fólico , Glutamato Formimidoiltransferase/genética , Micronutrientes/genética , Melhoramento Vegetal/métodos , Verduras/genética , Vitamina E , Zea mays/genética
3.
Sci Rep ; 12(1): 7037, 2022 04 29.
Artigo em Inglês | MEDLINE | ID: mdl-35487909

RESUMO

Malnutrition due to micronutrients and protein deficiency is recognized among the major global health issues. Genetic biofortification of wheat is a cost-effective and sustainable strategy to mitigate the global micronutrient and protein malnutrition. Genomic regions governing grain zinc concentration (GZnC), grain iron concentration (GFeC), grain protein content (GPC), test weight (TW), and thousand kernel weight (TKW) were investigated in a set of 184 diverse bread wheat genotypes through genome-wide association study (GWAS). The GWAS panel was genotyped using Breeders' 35 K Axiom Array and phenotyped in three different environments during 2019-2020. A total of 55 marker-trait associations (MTAs) were identified representing all three sub-genomes of wheat. The highest number of MTAs were identified for GPC (23), followed by TKW (15), TW (11), GFeC (4), and GZnC (2). Further, a stable SNP was identified for TKW, and also pleiotropic regions were identified for GPC and TKW. In silico analysis revealed important putative candidate genes underlying the identified genomic regions such as F-box-like domain superfamily, Zinc finger CCCH-type proteins, Serine-threonine/tyrosine-protein kinase, Histone deacetylase domain superfamily, and SANT/Myb domain superfamily proteins, etc. The identified novel MTAs will be validated to estimate their effects in different genetic backgrounds for subsequent use in marker-assisted selection.


Assuntos
Desnutrição , Triticum , Grão Comestível/genética , Estudo de Associação Genômica Ampla , Desnutrição/metabolismo , Micronutrientes/genética , Micronutrientes/metabolismo , Triticum/genética
4.
Food Chem ; 302: 125342, 2020 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-31416002

RESUMO

Cereal crops are the rich source of nutritional components that play an important role in micronutrient malnutrition. Biofortification is one of the most successful approaches to enhance the level of micronutrients, mainly targeted in bread wheat. Bread wheat is one of main sources of calories and proteins in the developing countries. In the present study, 50 bread wheat genotypes characterized for the zinc and iron content, the most important micronutrients. On the basis of the results, the nineteen genotypes were selected and evaluated for biochemical as well as quality parameters. The protein content, gluten quantity and quality found to be reduced in high zinc containing genotypes, whereas the total soluble sugars, total carotenoids, proline and grain hardness found to be in positive relation with high micronutrient content. These results could be useful to generate bread wheat varieties rich in micronutrients as well as better nutritional and quality traits.


Assuntos
Biofortificação , Pão , Micronutrientes/metabolismo , Triticum/química , Triticum/genética , Carotenoides/análise , Qualidade dos Alimentos , Genótipo , Ferro/análise , Ferro/metabolismo , Micronutrientes/genética , Prolina/análise , Prolina/metabolismo , Sementes/química , Açúcares/análise , Zinco/análise , Zinco/metabolismo
5.
Br J Nutr ; 122(2): 121-130, 2019 07 28.
Artigo em Inglês | MEDLINE | ID: mdl-31362796

RESUMO

Rapid advances in 'omics' technologies have paved the way forward to an era where more 'precise' approaches - 'precision' nutrition - which leverage data on genetic variability alongside the traditional indices, have been put forth as the state-of-the-art solution to redress the effects of malnutrition across the life course. We purport that this inference is premature and that it is imperative to first review and critique the existing evidence from large-scale epidemiological findings. We set out to provide a critical evaluation of findings from genome-wide association studies (GWAS) in the roadmap to precision nutrition, focusing on GWAS of micronutrient disposition. We found that a large number of loci associated with biomarkers of micronutrient status have been identified. Mean estimates of heritability of micronutrient status ranged between 20 and 35 % for minerals, 56-59 % for water-soluble and 30-70 % for fat-soluble vitamins. With some exceptions, the majority of the identified genetic variants explained little of the overall variance in status for each micronutrient, ranging between 1·3 and 8 % (minerals), <0·1-12 % (water-soluble) and 1·7-2·3 % for (fat-soluble) vitamins. However, GWAS have provided some novel insight into mechanisms that underpin variability in micronutrient status. Our findings highlight obvious gaps that need to be addressed if the full scope of precision nutrition is ever to be realised, including research aimed at (i) dissecting the genetic basis of micronutrient deficiencies or 'response' to intake/supplementation (ii) identifying trans-ethnic and ethnic-specific effects (iii) identifying gene-nutrient interactions for the purpose of unravelling molecular 'behaviour' in a range of environmental contexts.


Assuntos
Estudo de Associação Genômica Ampla , Micronutrientes/genética , Terapia Nutricional/métodos , Estado Nutricional/genética , Medicina de Precisão/métodos , Dieta , Suplementos Nutricionais , Humanos , Micronutrientes/administração & dosagem , Micronutrientes/deficiência , Minerais , Polimorfismo de Nucleotídeo Único/genética , Solubilidade , Vitaminas
6.
Biochem Biophys Res Commun ; 513(2): 293-299, 2019 05 28.
Artigo em Inglês | MEDLINE | ID: mdl-30944082

RESUMO

The circadian rhythm, which regulates various body functions, is transcriptionally controlled by a series of clock gene clusters. The clock genes are related to the pathology of various kinds of diseases, which in turn, is related to aging. Aging in humans is a worldwide problem; it induces sleep disorders and disruption of the circadian rhythm. It also decreases ocular vision and appetite and weakens the synchronization of clock genes by light and food. Therefore, a simple method for the synchronization of clock genes in the body is required. In this study, the influence of microcurrent stimulation (MCS) on the circadian machinery in wild-type (WT) and Clock mutant (Clk/Clk) mice was investigated. MCS induced Per1 mRNA expression in cultured mouse astrocytes; cAMP response element (CRE) in the Per1 mouse promoter was found to be important for the induction of Per1 mRNA. In addition, MCS increased the Per1 mRNA levels in mouse livers and caused the phase advance of the Per1 expression rhythm. The protein expression rhythm of phosphor-cAMP response element-binding protein (pCREB) was altered and the phase of expression of pCREB protein advanced. Finally, the influence of MCS on the locomotor activity rhythm in WT and Clk/Clk mice was investigated. MCS caused the phase advance of the locomotor activity rhythm in WT and Clk/Clk mice. The results of this study indicate that MCS activated the clock machinery in mice; MCS may thus improve the quality of new treatment modalities in the future.


Assuntos
Ritmo Circadiano , Regulação da Expressão Gênica , Micronutrientes/metabolismo , Animais , Proteínas CLOCK/genética , Proteínas CLOCK/metabolismo , Células Cultivadas , Proteína de Ligação ao Elemento de Resposta ao AMP Cíclico/genética , Proteína de Ligação ao Elemento de Resposta ao AMP Cíclico/metabolismo , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Micronutrientes/genética , Mutação , Proteínas Circadianas Period/genética , Proteínas Circadianas Period/metabolismo , Regiões Promotoras Genéticas , RNA Mensageiro/genética
7.
Nucleic Acids Res ; 47(7): 3711-3727, 2019 04 23.
Artigo em Inglês | MEDLINE | ID: mdl-30715423

RESUMO

In eukaryotes, the wobble position of tRNA with a GUN anticodon is modified to the 7-deaza-guanosine derivative queuosine (Q34), but the original source of Q is bacterial, since Q is synthesized by eubacteria and salvaged by eukaryotes for incorporation into tRNA. Q34 modification stimulates Dnmt2/Pmt1-dependent C38 methylation (m5C38) in the tRNAAsp anticodon loop in Schizosaccharomyces pombe. Here, we show by ribosome profiling in S. pombe that Q modification enhances the translational speed of the C-ending codons for aspartate (GAC) and histidine (CAC) and reduces that of U-ending codons for asparagine (AAU) and tyrosine (UAU), thus equilibrating the genome-wide translation of synonymous Q codons. Furthermore, Q prevents translation errors by suppressing second-position misreading of the glycine codon GGC, but not of wobble misreading. The absence of Q causes reduced translation of mRNAs involved in mitochondrial functions, and accordingly, lack of Q modification causes a mitochondrial defect in S. pombe. We also show that Q-dependent stimulation of Dnmt2 is conserved in mice. Our findings reveal a direct mechanism for the regulation of translational speed and fidelity in eukaryotes by a nutrient originating from bacteria.


Assuntos
DNA (Citosina-5-)-Metiltransferases/genética , Micronutrientes/genética , Biossíntese de Proteínas/genética , Proteínas de Schizosaccharomyces pombe/genética , Animais , Anticódon/genética , Asparagina/genética , DNA Mitocondrial/genética , Eucariotos/genética , Guanina/análogos & derivados , Guanina/metabolismo , Metilação , Camundongos , RNA de Transferência/genética , Ribossomos/genética , Schizosaccharomyces/genética , Tirosina/genética
8.
Bull Exp Biol Med ; 166(1): 107-117, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30450516

RESUMO

Modern medical approaches to the therapy of various diseases, including cancer, are based on the use of toxic drugs. The unfavorable side effects of traditional medicine could be counterbalanced by addition of natural bioactive substances to conventional therapy due to their mild action on cells combined with the multitargeted effects. To elucidate the real mechanisms of their biological activity, versatile approaches including a number of "omics" such as genomics, transcriptomics, proteomics, and metabolomics are used. This review highlights inclusion of bioactive natural compounds into the therapy of chronic diseases from the viewpoint of modern omics-based nutritional biochemistry. The recently accumulated data argue for necessity to employ nutrigenetic and nutrimetabolomic analyses to prevent or diminish the risk of chronic diseases.


Assuntos
Micronutrientes/genética , Micronutrientes/metabolismo , Genômica/métodos , Humanos , Metabolômica/métodos , Proteômica/métodos
9.
PLoS One ; 13(9): e0203005, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30192773

RESUMO

Sorghum (Sorghum bicolor (L.) Moench) is one of the principal staple for millions of people in sub-Saharan Africa serving as the main sources of protein. However, protein digestibility is low in sorghum and this may be affected by processing methods. In this study 15 sorghum cultivars and one variety each of maize (Zea maize) and tef (Eragrostis tef) all of Ethiopian origin were investigated for in-vitro protein digestibility (IVPD), activity and concentration of anti-nutritional factors and micro nutrient profile in raw flour and various cooked food samples. Kafirin composition content and composition was also determined from raw flour samples of the sorghum cultivars. IVPD was significantly different between genotypes with both maize and tef superior to sorghum both in cooked and uncooked state except for the high lysine genotype Wetet Be-gunchie. Cooking significantly reduced IVPD in all crops but had only minor effect in maize. Results revealed a highly significant interaction between genotype and food processing methods where, occasionally, genotypes with highest IVPD under one processing method ended up to be the lowest under another. Trypsin inhibitor levels had a significant and negative correlation with IVPD (r2 = 0.1), while changes in phytic acid concentration and intrinsic phytase levels during processing followed opposite trends to each other. Processing increased mineral levels by 20-44% for iron and 4-29% for zinc perhaps due to degradation of phytic acid. Results demonstrated that protein digestibility and the concentration of anti- nutritional factors varied widely depending on the food type. Identification of specific genotypes for a specific food product may help improve the nutritional quality of sorghum based foods.


Assuntos
Pão/análise , Farinha/análise , Manipulação de Alimentos , Micronutrientes/metabolismo , Proteínas de Plantas/metabolismo , Sorghum/genética , Manipulação de Alimentos/métodos , Micronutrientes/genética , Proteínas de Plantas/genética , Sorghum/metabolismo , Especificidade da Espécie , Zea mays/genética , Zea mays/metabolismo
10.
PLoS One ; 13(8): e0201756, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30096168

RESUMO

Rice provides energy and nutrition to more than half of the world's population. Breeding rice varieties with the increased levels of bioavailable micronutrients is one of the most sustainable approaches to tackle micronutrient malnutrition. So, high zinc and iron content in the grain are primary targets in rice biofortification breeding. In this study, we conducted QTL mapping using doubled haploid (DH) populations, PSBRc82 x Joryeongbyeo and PSBRc82 x IR69428, phenotyped for agronomic traits and micronutrients during two growing seasons and using genotypic information from analysis with the 6K SNP chip. A number of DH lines were identified as having high grain Zn and Fe content in polished rice. Importantly, we identified 20 QTLs for agronomic traits and 59 QTLs for a number of biofortification traits. Of the 79 QTLs, 12 were large-effect QTLs (>25% PVE), nine QTLs were consistent across seasons in either population, and one QTL was identified in both populations. Moreover, at least two QTLs were clustered in defined regions of chromosomes 1, 2, 3, 4, 5, 7 and 9. Eight epistatic interactions were detected for Cu, Mg, Na, and Zn in population 1. Furthermore, we identified several candidate genes near QTLs for grain Zn (OsNRAMP, OsNAS, OsZIP, OsYSL, OsFER, and OsZIFL family) and grain yield (OsSPL14 and OsSPL16). These new QTLs and candidate genes help to further elucidate the genetic basis for grain micronutrient concentration, and may prove useful for marker assisted breeding for this important trait.


Assuntos
Biofortificação , Genoma de Planta , Micronutrientes/genética , Oryza/genética , Melhoramento Vegetal , Locos de Características Quantitativas , Mapeamento Cromossômico , Epistasia Genética , Polimorfismo de Nucleotídeo Único , Especificidade da Espécie
11.
Plant Genome ; 11(2)2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-30025027

RESUMO

The mineral composition of crop shoot tissues is important for yield formation and nutrient remobilization to seeds. The natural diversity that exists within crop species can be used to investigate mechanisms that define plant mineral composition and to identify important genomic loci for these processes. The objective of this study was to determine shoot mineral nutrient concentrations in genetically diverse soybean [ (L.) Merr.] genotypes and to identify genomic regions associated with concentrations of different nutrients in shoot tissue. The genotypes were grown at two locations in 2 yr and characterized for macronutrient (Ca, Mg, P, K, and S) and micronutrient (B, Cu, Fe, Mn, and Zn) concentrations in shoot tissues. Genome-wide association studies were conducted with 31,748 single nucleotide polymorphisms (SNPs) via a unified mixed model to identify SNPs associated with macro- and micronutrient concentrations. The number of putative loci identified for the macronutrients ranged from 11 for Ca to 20 for K. For the micronutrients, the number ranged from 10 for Mn to 24 for Fe. In addition to colocated loci for multiple nutrients, 22 individual SNPs were associated with more than one nutrient such that 11 different nutrient combinations were encompassed by these SNPs. Ultimately, the putative loci identified in this study will need to be confirmed and are expected to aid in the identification of new sources of variation for use in soybean breeding programs as well as for mechanistic studies aimed at understanding the regulation of mineral nutrient uptake, translocation, and shoot tissue concentrations.


Assuntos
Loci Gênicos , Glycine max/genética , Micronutrientes/genética , Nutrientes/genética , Polimorfismo de Nucleotídeo Único , Frequência do Gene , Ontologia Genética , Variação Genética , Genética Populacional , Estudo de Associação Genômica Ampla , Genótipo , Missouri , Brotos de Planta/genética
12.
J Med Genet ; 55(7): 459-468, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29514873

RESUMO

BACKGROUND: Breast milk is the sole nutrition source during exclusive breastfeeding, and polyunsaturated fatty acids (FAs) are critical micronutrients in infant physical and cognitive development. There has been no prior genomewide association study of breast milk, hence our objective was to test for genetic association with breast milk FA composition. METHODS: We measured the fractional composition of 26 individual FAs in breast milk samples from three cohorts totalling 1142 Bangladeshi mothers whose infants were genotyped on the Illumina MEGA chip and replicated on a custom Affymetrix 30K SNP array (n=616). Maternal genotypes were imputed using IMPUTE. RESULTS: After running 33 separate FA fraction phenotypes, we found that SNPs known to be associated with serum FAs in the FADS1/2/3 region were also associated with breast milk FA composition (experiment-wise significance threshold 4.2×10-9). Hypothesis-neutral comparison of the 33 fractions showed that the most significant genetic association at the FADS1/2/3 locus was with fraction of arachidonic acid (AA) at SNP rs174556, with a very large per major allele effect size of 17% higher breast milk AA level. There was no evidence of independent association at FADS1/2/3 with any other FA or SNP after conditioning on AA and rs174556. We also found novel significant experiment-wise SNP associations with: polyunsaturated fatty acid (PUFA) 6/PUFA3 ratio (sorting nexin 29), eicosenoic (intergenic) and capric (component of oligomeric Golgi complex 3) acids; and six additional loci at genomewide significance (<5×10-8). CONCLUSIONS: AA is the primary FA in breast milk influenced by genetic variation at the FADS1/2/3 locus, extending the potential phenotypes under genetic selection to include breast milk composition, thereby possibly affecting infant growth or cognition. Breast milk FA composition is influenced by maternal genetics in addition to diet and body composition.


Assuntos
Ácidos Graxos Dessaturases/genética , Ácidos Graxos/genética , Estudo de Associação Genômica Ampla , Micronutrientes/genética , Alelos , Ácido Araquidônico/genética , Ácido Araquidônico/metabolismo , Dessaturase de Ácido Graxo Delta-5 , Dieta , Ácidos Graxos/metabolismo , Feminino , Genótipo , Humanos , Lactente , Micronutrientes/metabolismo , Leite Humano/química , Leite Humano/metabolismo , Mães , Fenótipo , Polimorfismo de Nucleotídeo Único/genética
13.
Sci Rep ; 7(1): 15662, 2017 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-29142238

RESUMO

Soil salinization and degradation is one of the consequences of climate change. Identification of major salt tolerance genes and marker assisted selection (MAS) can accelerate wheat breeding for this trait. We genotyped 154 wheat F2 lines derived from a cross between salt tolerant and susceptible cultivars using the Axiom Wheat Breeder's Genotyping Array. A high-density linkage map of 988 single nucleotide polymorphisms (SNPs) was constructed and utilized for quantitative trait loci (QTL) mapping for salt tolerance traits and mineral concentrations under salinity. Of 49 mapped QTLs, six were for Na+ exclusion (NAX) and two QTLs (qSNAX.2 A.1, qSNAX.2 A.2) on chromosome 2 A coincided with a reported major NAX QTL (Nax1 or HKT1;4). Two other major NAX QTLs were mapped on 7 A, which contributed 11.23 and 18.79% of the salt tolerance respectively. In addition to Ca+2 and Mg+2 QTLs, twenty-seven QTLs for tissue Phosphorus, Zinc, Iron, Manganese, Copper, Sulphur and Boron concentrations under salinity were also mapped. The 1293 segregating SNPs were annotated/located within genes for various ion channels, signalling pathways, transcription factors (TFs), metabolic pathways and 258 of them showed differential expression in silico under salinity. These findings will create new opportunities for salt tolerance breeding programs.


Assuntos
Locos de Características Quantitativas/genética , Tolerância ao Sal/genética , Oligoelementos/metabolismo , Triticum/genética , Mapeamento Cromossômico , Ligação Genética/genética , Genótipo , Micronutrientes/genética , Polimorfismo de Nucleotídeo Único/genética , Salinidade , Plântula/genética , Plântula/crescimento & desenvolvimento , Triticum/crescimento & desenvolvimento , Triticum/metabolismo
14.
Biol Trace Elem Res ; 180(1): 110-119, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28303511

RESUMO

Genetic factors that predispose to hypertension may contribute to element disturbances observed in hypertensive patients. We tested the hypothesis that the deletion allele of the angiotensin-converting enzyme (ACE) gene is associated with element imbalances in hypertension. The concentrations of elements in genetically predisposed to hypertension rats (SHRs) and their controls (WKY rats) were also examined. ICP-MS was used for elemental analysis of human hair and animal fur. Genotyping was performed by PCR. We also measured micronuclei frequency and distribution of peripheral blood leukocytes in cell cycle phases by flow cytometry and studied the correlations of these parameters with element contents. In general, the tendency for higher levels of toxic and lower levels of essential elements is observed in hypertension, specifically in patients carrying the D allele. Hypertensive men had significantly higher Be, V, Cr, As, Mo, Ag, Sb, and Na levels and lower Ca, Zn, Ba, and U levels compared with control subjects; the differences were not significant for Mg, Al, K, Mn, Fe, Co, Ni, Cu, Se, Cd, Tl, Pb, and Th. The D allele was associated with higher Be, Mo, and Th levels and lower Zn, Se, and Tl levels. The concentrations of Ca, Co, Mo and U were higher in SHR than those in the WKY rats. Mo, an antagonist of Cu, positively correlated with the S-phase cells, and Cu positively correlated with micronuclei frequency. The results suggest an involvement of the ACE I/D polymorphism in element imbalances in hypertension and attract attention to the possible significant role of genetic factors in Mo accumulation.


Assuntos
Hipertensão/genética , Micronutrientes/sangue , Peptidil Dipeptidase A/genética , Polimorfismo Genético , Adulto , Animais , Estudos de Casos e Controles , Humanos , Hipertensão/sangue , Leucócitos/fisiologia , Masculino , Metais/sangue , Micronutrientes/genética , Pessoa de Meia-Idade , Estado Nutricional , Ratos Endogâmicos SHR , Ratos Endogâmicos WKY
15.
Epigenomics ; 9(3): 351-367, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-28234021

RESUMO

Maternal smoking and micronutrient intake during pregnancy are two strong biological candidates for impacting the developing epigenome. The extent to which DNA methylation in offspring is modified by these intrauterine exposures has not been presented in parallel. In this review, we summarize human studies which have investigated genome-wide DNA methylation in the offspring in relation to maternal smoking and one-carbon micronutrient exposure during pregnancy. We contrast the primarily independent efforts for these two categories of exposure, and potential explanations for these differences. We emphasize methodological considerations such as power to detect methylation signals, exposure assessment, control of sources of variability, causal inference and the role of observed methylation changes in mediating downstream outcomes in the offspring.


Assuntos
Metilação de DNA/efeitos dos fármacos , Desenvolvimento Embrionário , Micronutrientes/genética , Fumar/genética , Epigenômica/métodos , Epigenômica/normas , Feminino , Estudo de Associação Genômica Ampla/métodos , Estudo de Associação Genômica Ampla/normas , Humanos , Micronutrientes/deficiência , Micronutrientes/farmacologia , Gravidez , Fumar/efeitos adversos
16.
Econ Hum Biol ; 20: 55-69, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26656205

RESUMO

This paper estimates a height production function using data from a randomized nutrition intervention conducted in rural Guatemala from 1969 to 1977. Using the experimental intervention as an instrument, the IV estimates of the effect of calories on height are an order of magnitude larger than the OLS estimates. Information from a unique measurement error process in the calorie data, counterfactuals results from the estimated model and external evidence from migration studies suggest that IV is not identifying a policy relevant average marginal impact of calories on height. The preferred, attenuation bias corrected OLS estimates from the height production function suggest that, averaging over ages, a 100 calorie increase in average daily calorie intake over the course of a year would increase height by 0.06 cm. Counterfactuals from the model imply that calories gaps in early childhood can explain at most 16% of the height gap between Guatemalan children and the US born children of Guatemalan immigrants.


Assuntos
Estatura/fisiologia , Desenvolvimento Infantil/fisiologia , Diarreia Infantil/complicações , Ingestão de Energia/fisiologia , Micronutrientes/fisiologia , Estado Nutricional/fisiologia , Estatura/genética , Criança , Pré-Escolar , Comparação Transcultural , Dieta/efeitos adversos , Dieta/estatística & dados numéricos , Feminino , Crescimento e Desenvolvimento/genética , Crescimento e Desenvolvimento/fisiologia , Guatemala , Humanos , Lactente , Recém-Nascido , Estudos Longitudinais , Masculino , Micronutrientes/genética , Micronutrientes/provisão & distribuição , Modelos Biológicos , Estado Nutricional/genética , Ensaios Clínicos Controlados Aleatórios como Assunto/estatística & dados numéricos , Estados Unidos
17.
Genome ; 57(8): 459-68, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25434748

RESUMO

Chickpea (Cicer arietinum L.) is the world's second most important pulse crop after common bean. Chickpea has historically been an important daily staple in the diet of millions of people, especially in the developing countries. Current chickpea breeding programs have mainly been directed toward high yield, biotic and abiotic stress resilience that has increased global production, but less attention has been directed toward improving micronutrient concentrations in seeds. In an effort to develop micronutrient-dense chickpea lines, a study to examine the variability and to identify SNP alleles associated with seed iron and zinc concentrations was conducted using 94 diverse accessions of chickpea. The results indicated that there is substantial variability present in chickpea germplasm for seed iron and zinc concentrations. In the current set of germplasm, zinc is negatively correlated with grain yield across all locations and years; whereas the negative correlation between iron and grain yield was only significant at the Elrose locality. Eight SNP loci associated with iron and (or) zinc concentrations in chickpea seeds were identified. One SNP located on chromosome 1 (chr1) is associated with both iron and zinc concentrations. On chr4, three SNPs associated with zinc concentration and two SNPs for iron concentration were identified. Two additional SNP loci, one on chr6 and the other on chr7, were also found to be associated with iron and zinc concentrations, respectively. The results show potential opportunity for molecular breeding for improvement of seed iron and zinc concentrations in chickpea.


Assuntos
Cruzamento/métodos , Cicer/genética , Variação Genética , Ferro/análise , Micronutrientes/análise , Sementes/química , Zinco/análise , Mapeamento Cromossômico , Cicer/química , Estudos de Associação Genética , Genótipo , Micronutrientes/genética , Polimorfismo de Nucleotídeo Único/genética
18.
Eur J Clin Nutr ; 67(5): 430-5, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23093344

RESUMO

The explosion in genetic and biological information presents an opportunity to explore, and ultimately exploit for health benefits, the inter-individual differences in the body's ability to metabolise, and respond to, nutrients. This has led to the concept of personalised nutrition as opposed to public health nutrition-the 'holy grail' of individualised dietary recommendations for optimal health. Using examples from micronutrient and lipid metabolism, this article assesses the scientific progress in our understanding of genetic influences on nutrition and its impact on risk of multifactorial diseases, and identifies the implications of research to date. Genetic variants that influence nutrient metabolism have been identified, but individual variants have not been conclusively linked to the risk of multifactorial diseases such as cancer and cardiovascular disease. Increasingly, it is realised that multiple variants influence nutrient metabolism and health outcomes. There is a need for quantitative assessment and mathematical modelling of multiple genetic effects. It is likely that personalised nutrition will not have the dramatic impact that was once expounded but will in the future, as we understand the complex influences of genetics, and impinge on the work of medical practitioners and dietitians by improving their ability to provide individual dietary advice and by contributing to the development of biomarkers.


Assuntos
Dieta , Variação Genética , Nutrigenômica , Fenômenos Fisiológicos da Nutrição/genética , Ciências da Nutrição , Estado Nutricional/genética , Medicina de Precisão , Predisposição Genética para Doença , Saúde , Humanos , Metabolismo dos Lipídeos/genética , Micronutrientes/genética , Micronutrientes/metabolismo
19.
Proc Nutr Soc ; 71(3): 410-24, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22564824

RESUMO

ApoE is a key protein in lipid metabolism with three major isoforms. ApoE allele frequencies show non-random global distribution especially in Europe with high apoE ε3 frequency in the Mediterranean area, whereas the apoE ε4 genotype is enriched in Northern Europe. The apoE ε4 genotype is one of the most important genetic risk factors for age-dependent chronic diseases, including CVD and Alzheimer's disease (AD). The apoE polymorphism has been shown to impact on blood lipids, biomarkers of oxidative stress and chronic inflammation, which all may contribute to the isoform-dependent disease risk. Studies in mice and human subjects indicate that the apoE ε3 but not the apoE ε4 genotype may significantly benefit from dietary flavonoids (e.g. quercetin) and n-3 fatty acids. Metabolism of lipid soluble vitamins E and D is likewise differentially affected by the apoE genotype. Epidemiological and experimental evidence suggest a better vitamin D status in apoE ε4 than ε3 subjects indicating a certain advantage of ε4 over ε3. The present review aims at evaluation of current data available on interactions between apoE polymorphism and dietary responsiveness to flavonoids, fat soluble vitamins and n-3 fatty acids. Likewise, distinct geographic distribution and chronic disease risk of the different apoE isoforms are addressed.


Assuntos
Apolipoproteínas E/genética , Doença Crônica/prevenção & controle , Dieta , Genótipo , Micronutrientes/genética , Fenômenos Fisiológicos da Nutrição/genética , Polimorfismo Genético , Animais , Apolipoproteínas E/sangue , Europa (Continente) , Ácidos Graxos Ômega-3/sangue , Ácidos Graxos Ômega-3/genética , Ácidos Graxos Ômega-3/farmacologia , Flavonoides/sangue , Flavonoides/genética , Flavonoides/farmacologia , Humanos , Lipídeos/sangue , Lipídeos/genética , Micronutrientes/sangue , Micronutrientes/farmacologia , Vitaminas/sangue , Vitaminas/genética , Vitaminas/farmacologia
20.
Med Hypotheses ; 78(4): 450-3, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22289341

RESUMO

Since the discovery of the genetic code, Mendel's heredity theory and Darwin's evolution theory, science believes that adaptations to the environment are processes in which the adaptation of the genes is a matter of probability, in which finally the specie will survive which is evolved by chance. We hypothesize that evolution and the adaptation of the genes is a well-organized fully adaptive system in which there is no rigidity of the genes. The dividing of the genes will take place in line with the environment to be expected, sensed through the mother. The encoding triplets can encode for more than one amino acid depending on the availability of the amino acids and the needed micronutrients. Those nutrients can cause disease but also prevent diseases, even cancer and auto immunity. In fact we hypothesize that auto immunity is an effective process of the organism to clear suboptimal proteins, formed due to amino acid and micronutrient deficiencies. Only when deficiencies sustain, disease will develop, otherwise the autoantibodies will function as all antibodies function, in a protective way. Furthermore, we hypothesize that essential amino acids are less important than nonessential amino acid (NEA). Species developed the ability to produce the nonessential amino acids themselves because they were not provided by food sufficiently. In contrast essential amino acids are widely available, without any evolutionary pressure. Since we can only produce small amounts of NEA and the availability in food can be reasoned to be too low they are still our main concern in amino acid availability. In conclusion, we hypothesize that increasing health will only be possible by improving our natural environment and living circumstances, not by changing the genes, since they are our last line of defense in surviving our environmental changes.


Assuntos
Adaptação Biológica/genética , Aminoácidos/genética , Autoimunidade/genética , Evolução Molecular , Código Genético/genética , Micronutrientes/genética , Modelos Biológicos , Humanos
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