Self-fusion and fusion cell isolation of transformants derived from white rot fungus Phanerochaete sordida YK-624 by simple visual method.

In order to develop a simple method for crossing two transformants, we first attempted to elucidate the fusion type (self-compatibility or -incompatible) of Phanerochaete sordida YK-624. Two transformants expressing green or red fluorescent protein derived from an auxotrophic mutant were constructed. Each recombinant protein fluoresced by expression as a fused protein with glyceraldehyde-3-phosphate dehydrogenase. On co-culture of both transformants, a number of sequential hyphal cells emitting dual fluorescence were formed at the contact areas of both hyphae. Some of the single cells isolated as protoplasts and chlamydospore from the co-cultures also expressed these fluorescent proteins. These results suggest that P. sordida YK-624 possesses a self-compatible fusion system. In addition, transformant strains with different fluorescence derived from this fungus can readily undergo self-fusion and nuclear interchange events by confrontational and mixed cultivation, and we developed a simple method that allows fused cells to be isolated as chlamydospores.

Removal of carbamazepine and naproxen by immobilized Phanerochaete chrysosporium under non-sterile condition.

This study explored the utilization of a white-rot fungus (WRF), Phanerochaete chrysosporium, immobilized in wood chips, to remove carbamazepine and naproxen under non-sterile condition. The removal efficiencies for both pharmaceutically active compounds (PhACs) in artificially contaminated water were improved by 4% for naproxen and 30% for carbamazepine in seven days, compared to without wood chips. Although adsorption was crucial at the early stage, bioremoval was found to be the main removal mechanism for both PhACs. The extracellular enzymes played important roles in the naproxen removal, while the intracellular enzyme system was responsible for the carbamazepine removal. The increased of intracellular enzyme activity through the immobilization of WRF cells may contribute to the significantly enhanced removal efficiency for carbamazepine. In addition, the removal of naproxen or carbamazepine slightly increased when both compounds coexisted, compared to the system where the two pharmaceuticals existed separately. Based on the batch experimental results, a fixed-bed bioreactor packed with a mixture of WRF mycelia pellets and wood chips was developed and operated with the intermittent feeding and continuous aerating mode for 28 days under non-sterile condition, with naproxen and carbamazepine spiked into the influent at 1.0 mg L(-1). Almost complete removal of naproxen and 60-80% removal of carbamazepine were obtained in the first two weeks. However, the removal efficiencies for both compounds suddenly dropped to as low as less than 20% by the 14th day, possibly due to the contamination by other microorganisms in the reactor. After the addition of 8.25% sodium hypochlorite at the ratio of 1:100 (v/v) into the influent tank on both Day 20 and Day 25, a rapid recovery (higher than 95%) was achieved in the naproxen removal, by effectively inhibiting contamination in the reactor. In comparison, the same rebounding phenomenon was not observed for carbamazepine and this difference may be associated to the various enzyme-working systems. A longer hydraulic retention time (HRT) was conducive to improve the removal of both compounds.

Cadmium removal and 2,4-dichlorophenol degradation by immobilized Phanerochaete chrysosporium loaded with nitrogen-doped TiO2 nanoparticles.

Phanerochaete chrysosporium has been identified as an effective bioremediation agent for its biosorption and degradation ability. However, the applications of P. chrysosporium are limited owing to its long degradation time and low resistance to pollutants. In this research, nitrogen-doped TiO2 nanoparticles were loaded on P. chrysosporium to improve the remediation capacity for pollutants. The removal efficiencies were maintained at a high level: 84.2% for Cd(II) and 78.9% for 2,4-dichlorophenol (2,4-DCP) in the wide pH range of 4.0 to 7.0 in 60 h. The removal capacity of immobilized P. chrysosporium loaded with nitrogen-doped TiO2 nanoparticles (PTNs) was strongly affected by the initial Cd(II) and 2,4-DCP concentrations. The hyphae of PTNs became tight, and a large amount of crystals adhered to them after the reaction. Fourier transform infrared spectroscopy showed that carboxyl, amino, and hydroxyl groups on the surface of PTNs were responsible for the biosorption. In the degradation process, 2,4-DCP was broken down into o-chlorotoluene and 4-hexene-1-ol. These results showed that PTNs is promising for simultaneous removal of Cd(II) and 2,4-DCP from wastewater.

Comparative study of the kinetics and equilibrium of phenol biosorption on immobilized white-rot fungus Phanerochaete chrysosporium from aqueous solution.

In this study the kinetics and equilibrium of phenol biosorption were studied from aqueous solution using batch technique at an initial pH of 5.5. The biosorption was studied on Ca-alginate beads, on non-living mycelial pellets of Phanerochaete chrysosporium immobilized on Ca-alginate, and on free fungal biomass. Ph. chrysosporium was grown in a liquid medium containing mineral and vitamin materials with complex composition. The biosorption process followed pseudo second-order kinetics on all bioadsorbents. The bioadsorption-equilibrium on blank Ca-alginate, free and immobilized fungal biomass can be described by Langmuir, anti-Langmuir and Freundlich isotherm models using nonlinear least-squares estimation.

A bioimage informatics approach to automatically extract complex fungal networks.

MOTIVATION: Fungi form extensive interconnected mycelial networks that scavenge efficiently for scarce resources in a heterogeneous environment. The architecture of the network is highly responsive to local nutritional cues, damage or predation, and continuously adapts through growth, branching, fusion or regression. These networks also provide an example of an experimental planar network system that can be subjected to both theoretical analysis and experimental manipulation in multiple replicates. For high-throughput measurements, with hundreds of thousands of branches on each image, manual detection is not a realistic option, especially if extended time series are captured. Furthermore, branches typically show considerable variation in contrast as the individual cords span several orders of magnitude and the compressed soil substrate is not homogeneous in texture making automated segmentation challenging. RESULTS: We have developed and evaluated a high-throughput automated image analysis and processing approach using Phase Congruency Tensors and watershed segmentation to characterize complex fungal networks. The performance of the proposed approach is evaluated using complex images of saprotrophic fungal networks with 10(5)-10(6) edges. The results obtained demonstrate that this approach provides a fast and robust solution for detection and graph-based representation of complex curvilinear networks. AVAILABILITY AND IMPLEMENTATION: The Matlab toolbox is freely available through the Oxford e-Research Centre website: http://www.oerc.ox.ac.uk/research/bioimage/software CONTACTS: boguslaw.obara@oerc.ox.ac.uk.

Discrimination of motile bacteria from filamentous fungi using dynamic speckle.

We present a dynamic laser speckle method to easily discriminate filamentous fungi from motile bacteria in soft surfaces, such as agar plate. The method allows the detection and discrimination between fungi and bacteria faster than with conventional techniques. The new procedure could be straightforwardly extended to different micro-organisms, as well as applied to biological and biomedical research, infected tissues analysis, and hospital water and wastewaters studies.

Modeling the biomass growth and enzyme secretion by the white rot fungus Phanerochaete chrysosporium: a stochastic-based approach.

The white rot fungus Phanerochaete chrysosporium has been identified to be an environmentally useful microorganism for the degradation of various hazardous pollutants, mainly because of its ligninolytic enzyme system, particularly the lignin peroxidase (LiP) secreted by the fungus. In the present work, the behavior of the fungus in liquid medium due to variation in physico-chemical parameters, i.e., glucose concentration, nitrogen concentration, agitation, etc., was studied. Increment of the initial concentration of glucose in the medium increases the biomass growth and LiP activity, when cultured under controlled conditions. The biomass growth and LiP activity by the fungus was modeled following stochastic approach. The behavior of growth and enzyme activity of the fungus observed from the model were found to be in agreement with the experiments qualitatively.

Biodegradation pathway and detoxification of the diazo dye Reactive Black 5 by Phanerochaete chrysosporium.

The in vivo biodegradation of the diazo dye Reactive Black 5 (RB5) by Phanerochaete chrysosporium immobilised on cubes of nylon sponge and on sunflower-seed shells (SS) in laboratory-scale bioreactors was investigated. The SS cultivation led to the best results with a decolouration percentage of 90.3% in 72 h for an initial RB5 concentration of 100 mg/L. It was found that the addition of 0.4 mM veratryl alcohol (VA) into the medium considerably increased the decolouration rate in SS cultivation. However, the addition of VA had no effect in the nylon cultivation. Thin layer chromatography (TLC) revealed that RB5 was transformed into one metabolite after 24 h. UV-vis spectroscopy and Fourier Transform Infrared (FT-IR) also confirmed the biodegradation of RB5. Toxicity of RB5 solutions before and after fungal treatment was assayed using Sinorhizobium meliloti as a sensitive soil microorganism. P. chrysosporium transformed the toxic dye RB5 into a non-toxic product.

A single mating-type locus composed of homeodomain genes promotes nuclear migration and heterokaryosis in the white-rot fungus Phanerochaete chrysosporium.

The white-rot basidiomycete fungus Phanerochaete chrysosporium (Agaricomycetes) is a model species that produces potent wood-degrading enzymes. The mating system of the species has been difficult to characterize due to its cryptic fruiting habit and lack of clamp connections in the heterokaryotic phase. By exploiting the draft genome sequence, we reevaluated the mating system of P. chrysosporium by studying the inheritance and segregation of putative mating-type gene homologues, the homeodomain transcription factor genes (MAT-A) and the pheromone receptors (MAT-B). A pattern of mating incompatibility and fructification consistent with a bipolar system with a single MAT locus was observed, but the rejection response was much weaker than that seen in other agaricomycete species, leading to stable heterokaryons with identical MAT alleles. The homeodomain genes appear to comprise the single MAT locus because they are heterozygous in wild strains and hyperpolymorphic at the DNA sequence level and promote aspects of sexual reproduction, such as nuclear migration, heterokaryon stability, and basidiospore formation. The pheromone receptor loci that might constitute a MAT-B locus, as in many other Agaricomycetes, are not linked to the MAT-A locus and display low levels of polymorphism. This observation is inconsistent with a bipolar mating system that includes pheromones and pheromone receptors as mating-type determinants. The partial uncoupling of nuclear migration and mating incompatibility in this species may be predicted to lead to parasexual recombination and may have contributed to the homothallic behavior observed in previous studies.

Fungal network responses to grazing.

Mycelial networks operate on scales from microscopic to many m(2) and naturally persist for extended periods. As fungi exhibit highly adaptive development, it is important to test behavioural responses on natural substrata with realistic nutrient levels across a range of spatial scales and extended time periods. Here we quantified network responses over 7.5 months in large (57 x 57cm) microcosms to test whether grazing shifts the network to a more resilient architecture. Resource limitation constrained any ability to respond at all, with both grazed and ungrazed networks gradually thinning out over time. Added resources sustained further exploratory growth, but only transiently increased cross-connectivity and network resilience, when tested by simulated damage in silico. Grazed networks were initially weaker and emergence of new exploratory growth was curtailed. However, increased interstitial proliferation led to new cross-links, consolidating the existing mycelial network and increasing the resilience of the network to further attack.

Changes in the gene expression of the white rot fungus Phanerochaete chrysosporium due to the addition of atropine.

We constructed a LongSAGE (Long Serial Analysis of Gene Expression) library from a 3-d culture of Phanerochaete chrysosporium supplemented with atropine, which inhibits the production of lignin-degrading enzymes. The library (the atropine library) contains 13,108 LongSAGE tags and 6,783 unique tags. The gene expression profile represented by the tags was compared with those of two previously constructed libraries, one of which was constructed using 2-d cultures in which the fungus had not yet produced ligninolytic enzymes (the 2-d library) and the other was constructed using 3-d cultures in which the fungus had just started to produce the enzymes (the 3-d library). We found a total of 595 genes that were at least twice more highly or at least twice less highly expressed in the 3-d library than in the 2-d library or the atropine library, and the fluctuations were statistically significant. The relationships among these 595 genes were considered using cluster analysis. Of the 595 genes, 164 showed expression patterns similar to those of four ligninolytic enzyme genes, which were more expressed on day 3 than under any other conditions. Many of these 164 genes comprised genes possibly involved in lignin degradation, lipid metabolism, xenobiotic degradation, stress response, or signal transduction pathways.

Biosorption of copper and cadmium in packed bed columns with live immobilized fungal biomass of Phanerochaete chrysosporium.

Biosorption of copper (II) and cadmium (II) by live Phanerochaete chrysosporium immobilized by growing onto polyurethane foam material in individual packed bed columns over two successive cycles of sorption-desorption were investigated in this study. Initial pH and concentrations of the metals in their respective solutions were set optimum to each of those: 4.6 and 35 mg x l(-1) in case of copper and 5.3 and 11 mg x l(-1) for cadmium. The breakthrough curves obtained for the two metals during sorption in both the cycles exhibited a constant pattern at various bed depths in the columns. The maximum yield of the columns in removing these metals were found to be, respectively, 57% and 43% for copper and cadmium indicating that copper biosorption by the immobilized fungus in its column was better than for cadmium. Recovery values of the sorbed copper and cadmium metals from the respective loaded columns by using 0.1 N HCl as eluant was observed to be quite high at more than 65% and 75%, respectively, at the end of desorption in both the cycles. Breakthrough models of bed-depth service time, Adams-Bohart, Wolborska, and Clark were fitted to the experimental data on sorption of copper and cadmium in the columns, and only the Clark model could fit the sorption performance of the columns well over the entire range of ratios of concentrations of effluent to influent, i.e., C/C0 for both copper and cadmium biosorption. The kinetic coefficients of mass transfer and other suitable parameters in the system were determined by applying the experimental data at C/C0 ratios lower than 0.5 to the other three models.

Quantifying dynamic resource allocation illuminates foraging strategy in Phanerochaete velutina.

Saprotrophic woodland fungi forage for mineral nutrients and woody resources by extension of a mycelial network across the forest floor. Different species explore at different rates and establish networks with qualitatively differing architecture. However, detailed understanding of fungal foraging behaviour has been hampered by the absence of tools to quantify resource allocation and growth accurately and non-invasively. To solve this problem, we have used photon-counting scintillation imaging (PCSI) to map and quantify nutrient allocation and localised growth simultaneously in heterogeneous resource environments. We show that colonies spontaneously shift to an asymmetric growth pattern, even in the absence of added resources, often with a distinct transition between the two growth phases. However, the extent of polarisation was much more pronounced and focussed in the presence of an additional cellulose resource. In this case, there was highly localised growth, often at the expense of growth elsewhere in the colony, and marked accumulation of (14)C-AIB in the sector of the colony with the added resource. The magnitude of the response was greatest when resource was added around the time of the endogenous developmental transition. The focussed response required a metabolisable resource, as only limited changes were seen with glass fibre discs used to mimic the osmotic and thigmotropic stimuli upon resource addition. Overall the behaviour is consistent with an adaptive foraging strategy, both to exploit new resources and also to redirect subsequent foraging effort to this region, presumably with an expectation that the probability of finding additional resources is increased.

Manganese peroxidase production by immobilized Phanerochaete chrysosporium BKM-F-1767 in a cell bioreactor.

Manganese-dependent peroxidase (MnP) production was performed in an immobilized cell bioreactor in which Phanerochaete chrysosporium BKM-F-1767 was immobilized on polystyrene foam. The immobilized cell culture yielded significantly greater MnP activity than the conventional stationary liquid culture. Cultivation was carried out in batch mode; the effect of glucose concentration was investigated and growth kinetics parameters were found as, micromax=0.59 day(-1), Ks=0.33 g/L and Kss=14.5. Batch operation led to maximum MnP (770.82 U/L) in the culture medium containing 0.05% Tween 80, 10 g/L glucose, and 174 microM Mn2+ at 37 degrees C and pH 4.5. Enzyme productivity was obtained as 110.12 U/day/L.

Biosorption of 2,4-dichlorophenol by immobilized white-rot fungus Phanerochaete chrysosporium from aqueous solutions.

The fungus Phanerochaete chrysosporium was immobilized in several polymer matrices: Ca-alginate, Ca-alginate-polyvinyl alcohol (PVA) and pectin, and was then used as a biosorbent for removing 2,4-dichlorophenol (2,4-DCP) in wastewater. Immobilization of P. chrysosporium onto pectin was less efficient than that onto other matrices because of its poor mechanical strength and low adsorption efficiency. Ca-alginate immobilized fungal beads with biocompatibility exhibited good mechanical strength and adsorption efficiency over 60%. Among the different biomass dosages in Ca-alginate immobilized fungal beads, 1.25% (w/v) was the optimum. The adsorption data of 2,4-DCP on the blank Ca-alginate beads, free, and immobilized fungal biomass could be described by the Langmuir and Freundlich isotherms very well. Desorption operation was efficiently completed by using distilled water as eluant, and the desorption efficiency reached 82.16% at an optimum solid/liquid ratio of 14.3. The consecutive adsorption/desorption cycles studies employing the Ca-alginate immobilized fungal beads demonstrated that the immobilized fungal biomass could be reused in five cycles without significant loss of adsorption efficiency and adsorbent weight.

Reorganization of mycelial networks of Phanerochaete velutina in response to new woody resources and collembola (Folsomia candida) grazing.

Mycelial development of Phanerochaete velutina extending from wood inocula in 57 x 57 cm trays of non-sterile soil was characterized after adding: (1) collembola; (2) new wood resources; (3) both new wood resources and collembola; and (4) no new resources and no collembola. After 99 d, all systems had produced distinct mycelial cords, much of the diffuse mycelium and thinner cords that were produced early on having regressed. Systems to which new resources (but no collembola) had been added developed thick cords interconnecting inocula with new resources, and much of the non-connected mycelium regressed. Nonetheless, these systems had significantly greater hyphal coverage and mass fractal dimension than the other treatments, resulting from outgrowth from the new resources. Unexpectedly, morphology of grazed systems with no added resources was very similar to that of ungrazed systems with no added resources, apparently because the collembola grazed on senescing hyphae that would ultimately have regressed. Where new resources and collembola were added, there was proliferation of fine mycelium along connective cords and elsewhere, but this was not as extensive as in the new resource/no collembola systems, the fine mycelium apparently being grazed in patches. Fungus gnat (family Sciaridae) larvae contaminated eight (out of 14) trays with no added collembola, but none of the systems to which collembola had been added. They burrowed around the wood and caused cords to be severed.

[Remediation of pentachlorophenol-contaminated soil by composting with inoculation of white rot fungi].

In the experiment four parallel beakers A, B, C,D were adopted, among which A was without any inoculum, B was added with the inocula of immobilized Phanerochaete chrysosporium, C was inoculated with non-immobilized Phanerochaete chrysosporium, and D was only with pentachlorophenol (PCP)-contaminated soils open to air. By contrastive analyses, the feasibility of applying composting to the bioremediation of the PCP-contaminated soil was discussed. It can be seen from the experimental results that composting with inocula was better than that without innoculation and after 60d composting, more than 94% PCP in the compost was degraded; meanwhile the effect by immobilized fungi was better than that by nonimmobilized one. From the experimental data it shows that the PCP degradation achieved 50% on 9d by immobilized fungi. What's more, shown by indicators of germination index, volatile solids, microbial carbon activity and other factors, the compost were mature and of no hazard to plant at the end, which provided the benign environment for the Phanerochaete chrysosporium to degrade the PCP so that the bioremediation and composting could be combined together.