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1.
Microbiol Res ; 283: 127691, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38492364

RESUMO

Saccharomycopsis species are natural organic sulphur auxotrophs. Their genomes do not encode genes for the uptake and assimilation of sulphate and thus these species cannot grow on media lacking e.g. methionine. Due to the similarity between sulphate and selenate, uptake and assimilation of selenate occurs through the same pathway starting from sulphate transporters encoded by the homologs of the SUL1 and SUL2 genes in S. cerevisiae. Lack of these transporters renders Saccharomycopsis species resistant to selenate levels that are toxic to other microorganisms. We used this feature to enrich environmental samples for Saccharomycopsis species. This led to the isolation of S. schoenii, S. lassenensis and a hitherto undescribed Saccharomycopsis species with limited by-catch of other yeasts, mainly belonging to Metschnikowia and Hanseniaspora. We performed growth and predation assays to characterize the potential of these new isolates as predacious yeasts. Most Saccharomycopsis species are temperature sensitive and cannot grow at 37°C; with the exception of S. lassenensis strains. Predation assays with S. schoenii and S. cerevisiae as prey indicated that predation was enhanced at 20°C compared to 30°C. We crossed an American isolate of S. schoenii with our German isolate using marker directed breeding. Viable progeny indicated that both strains are interfertile and belong to the same biological species. S. lassenensis is heterothallic, while S. schoenii and the new Saccharomycopsis isolate, for which we suggest the name S. geisenheimensis sp. nov., are homothallic.


Assuntos
Proteínas de Saccharomyces cerevisiae , Saccharomycopsis , Saccharomycopsis/genética , Saccharomyces cerevisiae/genética , Ácido Selênico/metabolismo , Transporte Biológico , Sulfatos , Transportadores de Sulfato/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Proteínas de Transporte de Ânions/metabolismo
2.
Fungal Genet Biol ; 167: 103809, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-37169215

RESUMO

Commonly used fungal transformation protocols rely on the use of either electroporation or the lithium acetate/single strand carrier DNA/Polyethylene glycol/heat shock method. We have used the latter method previously in establishing DNA-mediated transformation in Saccharomycopsis schoenii, a CTG-clade yeast that exhibits necrotrophic mycoparasitism. To elucidate the molecular mechanisms of predation by Saccharomycopsis we aim at gene-function analyses to identify virulence-related pathways and genes. However, in spite of a satisfactory transformation efficiency our efforts were crippled by high frequency of ectopic integration of disruption cassettes. Here, we show that overnight starvation of S. schoenii cells, while reducing the number of transformants, resulted in a substantial increase in gene-targeting via homologous recombination. To demonstrate this, we have deleted the S. schoenii CHS1, HIS3 and LEU2 genes and determined the required size of the flanking homology regions. Additionally, we complemented the S. schoenii leu2 mutant with heterologous LEU2 gene from Saccharomycopsis fermentans. To demonstrate the usefulness of our approach we also generated a S. fermentans leu2 strain, suggesting that this approach may have broader applicability.


Assuntos
Saccharomycopsis , Saccharomycopsis/genética , Saccharomycopsis/metabolismo , Saccharomyces cerevisiae/genética , Transformação Genética
3.
J Microbiol ; 59(8): 753-762, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34219208

RESUMO

The amylolytic yeast Saccharomycopsis fibuligera is a predominant species in starters and the early fermentation stage of Chinese liquor (Baijiu). However, the genetic diversity of the species remains largely unknown. Here we sequenced the genomes of 97 S. fibuligera strains from different Chinese Baijiu companies. The genetic diversity and population structure of the strains were analyzed based on 1,133 orthologous genes and the whole genome single nucleotide polymorphisms (SNPs). Four main lineages were recognized. One lineage contains 60 Chinese strains which are exclusively homozygous with relatively small genome sizes (18.55-18.72 Mb) and low sequence diversity. The strains clustered in the other three lineages are heterozygous with larger genomes (21.85-23.72 Mb) and higher sequence diversity. The genomes of the homozygous strains showed nearly 100% coverage with the genome of the reference strain KPH12 and the sub-genome A of the hybrid strain KJJ81 at the above 98% sequence identity level. The genomes of the heterozygous strains showed nearly 80% coverage with both the sub-genome A and the whole genome of KJJ81, suggesting that the Chinese heterozygous strains are also hybrids with nearly 20% genomes from an unidentified source. Eighty-three genes were found to show significant copy number variation between different lineages. However, remarkable lineage specific variations in glucoamylase and α-amylase activities and growth profiles in different carbon sources and under different environmental conditions were not observed, though strains exhibiting relatively high glucoamylase activity were mainly found from the homozygous lineage.


Assuntos
Variação Genética , Saccharomycopsis/genética , Saccharomycopsis/metabolismo , Vinho/microbiologia , China , Fermentação , Genoma Fúngico , Filogenia , Saccharomycopsis/classificação , Saccharomycopsis/isolamento & purificação , Vinho/análise
4.
J Microbiol ; 59(6): 598-608, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-34052992

RESUMO

Aroma ester components produced by fermenting yeast cells via alcohol acetyltransferase (AATase)-catalyzed intracellular reactions are responsible for the fruity character of fermented alcoholic beverages, such as beer and wine. Acetate esters are reportedly produced at relatively high concentrations by non-Saccharomyces species. Here, we identified 12 ATF orthologues (SfATFs) encoding putative AATases, in the diploid genome of Saccharomycopsis fibuligera KJJ81, an isolate from wheat-based Nuruk in Korea. The identified SfATF proteins (SfAtfp) display low sequence identities with S. cerevisiae Atf1p (between 13.3 and 27.0%). All SfAtfp identified, except SfAtf(A)4p and SfAtf(B)4p, contained the activation domain (HXXXD) conserved in other Atf proteins. Culture supernatant analysis using headspace gas chromatography mass spectrometry confirmed that the recombinant S. cerevisiae strains expressing SfAtf(A)2p, SfAtf(B)2p, and SfAtf(B)6p produced high levels of isoamyl and phenethyl acetates. The volatile aroma profiles generated by the SfAtf proteins were distinctive from that of S. cerevisiae Atf1p, implying difference in the substrate preference. Cellular localization analysis using GFP fusion revealed the localization of SfAtf proteins proximal to the lipid particles, consistent with the presence of amphipathic helices at their N- and C-termini. This is the first report that systematically characterizes the S. fibuligera ATF genes encoding functional AATases responsible for acetate ester formation using higher alcohols as substrate, demonstrating their biotechnological potential for volatile ester production.


Assuntos
Acetatos/metabolismo , Ésteres/metabolismo , Proteínas Fúngicas/metabolismo , Proteínas/metabolismo , Saccharomycopsis/enzimologia , Sequência de Aminoácidos , Fermentação , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Domínios Proteicos , Estrutura Secundária de Proteína , Proteínas/química , Proteínas/genética , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomycopsis/química , Saccharomycopsis/genética , Saccharomycopsis/metabolismo , Alinhamento de Sequência , Vinho/análise , Vinho/microbiologia
5.
J Microbiol Biotechnol ; 31(2): 272-279, 2021 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-33397826

RESUMO

Two genes encoding probable α-L-arabinofuranosidase (E.C. 3.2.1.55) isozymes (ABFs) with 92.3% amino acid sequence identity, ABF51A and ABF51B, were found from chromosomes 3 and 5 of Saccharomycopsis fibuligera KJJ81, an amylolytic yeast isolated from Korean wheat-based nuruk, respectively. Each open reading frame consists of 1,551 nucleotides and encodes a protein of 517 amino acids with the molecular mass of approximately 59 kDa. These isozymes share approximately 49% amino acid sequence identity with eukaryotic ABFs from filamentous fungi. The corresponding genes were cloned, functionally expressed, and purified from Escherichia coli. SfABF51A and SfABF51B showed the highest activities on p-nitrophenyl arabinofuranoside at 40~45°C and pH 7.0 in sodium phosphate buffer and at 50°C and pH 6.0 in sodium acetate buffer, respectively. These exo-acting enzymes belonging to the glycoside hydrolase (GH) family 51 could hydrolyze arabinoxylo-oligosaccharides (AXOS) and arabino-oligosaccharides (AOS) to produce only L-arabinose, whereas they could hardly degrade any polymeric substrates including arabinans and arabinoxylans. The detailed product analyses revealed that both SfABF51 isozymes can catalyze the versatile hydrolysis of α-(1,2)-and α-(1,3)-L-arabinofuranosidic linkages of AXOS, and α-(1,2)-, α-(1,3)-, and α-(1,5)-linkages of linear and branched AOS. On the contrary, they have much lower activity against the α-(1,2)-and α-(1,3)-double-substituted substrates than the single-substituted ones. These hydrolases could potentially play important roles in the degradation and utilization of hemicellulosic biomass by S. fibuligera.


Assuntos
Proteínas Fúngicas/metabolismo , Glicosídeo Hidrolases/metabolismo , Oligossacarídeos/metabolismo , Saccharomycopsis/enzimologia , Catálise , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/genética , Concentração de Íons de Hidrogênio , Isoenzimas/química , Isoenzimas/genética , Isoenzimas/metabolismo , Cinética , Oligossacarídeos/química , Saccharomycopsis/química , Saccharomycopsis/genética , Saccharomycopsis/metabolismo , Especificidade por Substrato
6.
Microbiol Res ; 229: 126342, 2019 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-31536874

RESUMO

Non-conventional yeasts (NCYs), i.e. all yeasts other than Saccharomyces cerevisiae, are emerging as novel production strains and gain more and more attention to exploit their unique properties. Yet, these yeasts can hardly compete against the advanced methodology and genetic tool kit available for exploiting and engineering S. cerevisiae. Currently, for many NCYs one has to start from scratch to initiate molecular genetic manipulations, which is often time consuming and not straight-forward. More so because utilization of S. cerevisiae tools based on short-flank mediated homologous recombination or plasmid biology are not readily applicable in NCYs. Here we present a script with discrete steps that will lead to the development of a basic and expandable molecular toolkit for ascomycetous NCYs and will allow genetic engineering of novel platform strains. For toolkit development the highly efficient in vivo recombination efficiency of S. cerevisiae is utilized in the generation and initial testing of tools. The basic toolkit includes promoters, reporter genes, selectable markers based on dominant antibiotic resistance genes and the generation of long-flanking homology disruption cassettes. The advantage of having pretested molecular tools that function in a heterologous host facilitate NCY strain manipulations. We demonstrate the usefulness of this script on Saccharomycopsis schoenii, a predator yeast with useful properties in fermentation and fungal biocontrol.


Assuntos
Biologia Molecular/métodos , Saccharomycopsis/genética , Fermentação , Plasmídeos/genética , Plasmídeos/metabolismo , Regiões Promotoras Genéticas , Saccharomyces cerevisiae , Saccharomycopsis/metabolismo
7.
PLoS Pathog ; 15(5): e1007692, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-31071195

RESUMO

Pathogenic yeasts and fungi are an increasing global healthcare burden, but discovery of novel antifungal agents is slow. The mycoparasitic yeast Saccharomycopsis schoenii was recently demonstrated to be able to kill the emerging multi-drug resistant yeast pathogen Candida auris. However, the molecular mechanisms involved in the predatory activity of S. schoenii have not been explored. To this end, we de novo sequenced, assembled and annotated a draft genome of S. schoenii. Using proteomics, we confirmed that Saccharomycopsis yeasts have reassigned the CTG codon and translate CTG into serine instead of leucine. Further, we confirmed an absence of all genes from the sulfate assimilation pathway in the genome of S. schoenii, and detected the expansion of several gene families, including aspartic proteases. Using Saccharomyces cerevisiae as a model prey cell, we honed in on the timing and nutritional conditions under which S. schoenii kills prey cells. We found that a general nutrition limitation, not a specific methionine deficiency, triggered predatory activity. Nevertheless, by means of genome-wide transcriptome analysis we observed dramatic responses to methionine deprivation, which were alleviated when S. cerevisiae was available as prey, and therefore postulate that S. schoenii acquired methionine from its prey cells. During predation, both proteomic and transcriptomic analyses revealed that S. schoenii highly upregulated and translated aspartic protease genes, probably used to break down prey cell walls. With these fundamental insights into the predatory behavior of S. schoenii, we open up for further exploitation of this yeast as a biocontrol yeast and/or source for novel antifungal agents.


Assuntos
Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Genoma Fúngico , Proteoma/análise , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomycopsis/crescimento & desenvolvimento , Transcriptoma , Animais , Perfilação da Expressão Gênica , Sequenciamento de Nucleotídeos em Larga Escala , Metionina/deficiência , Comportamento Predatório , Saccharomyces cerevisiae/genética , Saccharomycopsis/genética , Saccharomycopsis/metabolismo
8.
FEMS Microbiol Lett ; 365(10)2018 05 01.
Artigo em Inglês | MEDLINE | ID: mdl-29672689

RESUMO

This study aimed at the production of biosurfactants from yeasts under acidic conditions using residual soybean oil as a carbon source, as well as the biosurfactant produced in the solubilization of metals in sewage sludge. The yeast Meyerozyma guilliermondii was considered the best producer in both pH 4.0 and 2.0; therefore, the product obtained by this yeast was characterized by Fourier transform infrared (FT-IR) and 1H nuclear magnetic resonance (NMR) spectroscopy. Moreover, it was applied in metal removal assays in anaerobic sewage sludge. The spectra obtained in FT-IR suggested that M. guilliermondii's biosurfactant had a similar structure to glycolipids from the sophorolipid class, and it was confirmed by 1H NMR spectroscopy. In the bioleaching assays, the application of biosurfactant (2%) produced by M. guilliermondii with pH adjusted to 2.0 was able to solubilize 15.9% of cadmium from the sewage sludge.


Assuntos
Metais/química , Saccharomycopsis/metabolismo , Esgotos/química , Óleo de Soja/metabolismo , Tensoativos/metabolismo , Poluentes da Água/química , Meios de Cultura/química , Meios de Cultura/metabolismo , Concentração de Íons de Hidrogênio , Saccharomycopsis/genética , Óleo de Soja/química , Tensoativos/química , Resíduos/análise , Purificação da Água
9.
World J Microbiol Biotechnol ; 33(7): 140, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28589508

RESUMO

We describe a procedure by which filter paper is digested with a cellulolytic enzyme preparation, obtained from Trichoderma reesei cultivated under solid state fermentation conditions and then fermented by a recombinant Saccharomyces cerevisiae strain. The yeast strain produces a ß-glucosidase encoded by the BGL1 gene from Saccharomycopsis fibuligera that quantitatively and qualitatively complements the limitations that the Trichoderma enzyme complex shows for this particular activity. The supplemental ß-glucosidase activity fuels the progression of cellulose hydrolysis and fermentation by decreasing the inhibitory effects caused by the accumulation of cellobiose and glucose. Fermentation of filter paper by this procedure yields ethanol concentrations above 70 g/L.


Assuntos
Celulose/metabolismo , Proteínas Fúngicas/metabolismo , beta-Glucosidase/metabolismo , Biocombustíveis/microbiologia , Etanol/metabolismo , Fermentação , Proteínas Fúngicas/genética , Glucose/metabolismo , Hidrólise , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomycopsis/enzimologia , Saccharomycopsis/genética , Trichoderma/enzimologia , Trichoderma/crescimento & desenvolvimento , beta-Glucosidase/genética
10.
J Microbiol ; 55(5): 337-343, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-28455588

RESUMO

The amylolytic yeast Saccharomycopsis fibuligera is the predominant yeast in the starter product, nuruk, which is utilized for rice wine production in South Korea. Latest molecular studies explore a recently developed interspecific hybridization among stains of S. fibuligera with a unique genetic feature. However, the origin of the natural hybridization occurrence is still unclear. Thus, to respectively distinguish parental and hybrid strains, specific primer sets were applied on 141 yeast strains isolated from different nuruk samples fermented in different provinces. Sixty-seven strains were defined accordingly as parental species with genome A while 8 strains were defined as hybrid strains. Unexpectedly, another parental species with genome B could not be found among the strain pools yet. Furthermore, it was observed that hybrid strains are phenotypically different from A genome strains; asci containing tetrad ascospores were observed in A genome strains more frequent than in hybrid strains. Nevertheless, hybrid strains were slightly more thermotolerant than A genome strains. Interestingly, all hybrid strains were located only in Jeju province. Based on these sets of data, we speculated that the unique climate of Jeju province might play an evolutionary role in the interspecific hybridization between A genome strains, as well as the unculturable allopatric B genome strains.


Assuntos
Evolução Molecular , Saccharomycopsis/genética , Saccharomycopsis/metabolismo , Vinho/microbiologia , DNA Fúngico/genética , Fermentação , Oryza/microbiologia , Filogenia , República da Coreia , Saccharomyces cerevisiae/genética , Análise de Sequência de DNA , Termotolerância
11.
Food Microbiol ; 61: 83-92, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27697173

RESUMO

Daqu, a traditional fermentation starter that is used for Chinese liquor and vinegar production, is still manufactured through a traditional spontaneous solid-state fermentation process with no selected microorganisms are intentionally inoculated. The aim of this work was to analyze the microbiota dynamics during the solid-state fermentation process of Daqu using a traditional and bioaugmented inoculation with autochthonous of Bacillus, Pediococcus, Saccharomycopsis and Wickerhamomyces at an industrial scale. Highly similar dynamics of physicochemical parameters, enzymatic activities and microbial communities were observed during the traditional and bioaugmented solid-state fermentation processes. Both in the two cases, groups of Streptophyta, Rickettsiales and Xanthomonadales only dominated the first two days, but Bacillales and Eurotiales became predominant members after 2 and 10 days fermentation, respectively. Phylotypes of Enterobacteriales, Lactobacillales, Saccharomycetales and Mucorales dominated the whole fermentation process. No significant difference (P > 0.05) in microbial structure was observed between the traditional and bioaugmented fermentation processes. However, slightly higher microbial richness was found during the bioaugmented fermentation process after 10 days fermentation. Our results reinforced the microbiota dynamic stability during the solid-state fermentation process of Daqu, and might aid in controlling the traditional Daqu manufacturing process.


Assuntos
Ascomicetos/fisiologia , Bacillus/fisiologia , Fermentação , Microbiota , Pediococcus/fisiologia , Saccharomycopsis/fisiologia , Ácido Acético , Bebidas Alcoólicas/análise , Bebidas Alcoólicas/microbiologia , Ascomicetos/genética , Bacillus/genética , Bactérias/genética , Bactérias/metabolismo , Biodiversidade , Biologia Computacional , Eletroforese em Gel de Gradiente Desnaturante , Fungos/genética , Microbiota/genética , Microbiota/fisiologia , Pediococcus/genética , Reação em Cadeia da Polimerase , Saccharomycopsis/genética , Análise de Sequência de DNA
12.
Mycoses ; 59(10): 652-61, 2016 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27392537

RESUMO

During the mycological analysis of skin and nail samples taken from patients with onychomycosis and tineas in Assiut city, it is interesting to report that yeast fungi were the main causal agents being cultured from 45.79% of total cases. In general, 21 species of yeast were isolated. Some of these are reported for the first time from clinical specimens. From the literature available up-to-date around the world, this study reports for the first time Saccharomycopsis fibuligera as the causal agent of four clinical cases: two onychomycoses, one tinea capitis and one tinea amiantacea. Also, it is reported here the second record for Trichosporon dohaense from a case of onychomycosis of a 40-year-old woman (after its original description in 2009 by Taj-Aldeen et al. J Clin Microbiol 47: 1791). Candida galli was also reported for the first time from clinical specimen (tinea unguium) in 2014 by Galán-Sánchez et al. Mycopathol 178: 303, and this study reports the second case of onychomycosis by C. galli. These strains were identified on the basis of their phenotypic, biochemical, physiological and genotypic features. Strains and internal transcribed spacer (ITS) gene sequences of these species are deposited at Assiut University Mycological Center Culture Collection (AUMC) and National Center for Biotechnological Information (NCBI) respectively.


Assuntos
Candida/isolamento & purificação , DNA Espaçador Ribossômico/genética , Unhas/microbiologia , Saccharomycopsis/isolamento & purificação , Pele/microbiologia , Tinha/microbiologia , Trichosporon/isolamento & purificação , Adolescente , Adulto , Candida/classificação , Candida/genética , Candida/fisiologia , Criança , DNA Fúngico/genética , Dermatomicoses/microbiologia , Feminino , Fermentação , Genótipo , Humanos , Masculino , Técnicas de Tipagem Micológica , Onicomicose/microbiologia , Filogenia , Saccharomycopsis/classificação , Saccharomycopsis/genética , Saccharomycopsis/fisiologia , Análise de Sequência de DNA , Tinha do Couro Cabeludo/microbiologia , Trichophyton/genética , Trichophyton/isolamento & purificação , Trichophyton/fisiologia , Trichosporon/classificação , Trichosporon/genética , Trichosporon/fisiologia , Adulto Jovem
13.
World J Microbiol Biotechnol ; 32(5): 80, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-27038950

RESUMO

The search for new microbial strains that are able to withstand inhibitors released from hemicellulosic hydrolysis and are also still able to convert sugars in ethanol/xylitol is highly desirable. A yeast strain isolated from sugarcane juice and identified as Meyerozyma guilliermondii was evaluated for the ability to grow and ferment pentoses in synthetic media and in sugarcane bagasse hydrolysate. The yeast grew in xylose, arabinose and glucose at the same rate at an initial medium pH of 5.5. At pH 4.5, the yeast grew more slowly in arabinose. There was no sugar exhaustion within 60 h. At higher xylose concentrations with a higher initial cell concentration, sugar was exhausted within 96 h at pH 4.5. An increase of 350 % in biomass was obtained in detoxified hydrolysates, whereas supplementation with 3 g/L yeast extract increased biomass production by approximately 40 %. Ethanol and xylitol were produced more significantly in supplemented hydrolysates regardless of detoxification. Xylose consumption was enhanced in supplemented hydrolysates and arabinose was consumed only when xylose and glucose were no longer available. Supplementation had a greater impact on ethanol yield and productivity than detoxification; however, the product yields obtained in the present study are still much lower when compared to other yeast species in bagasse hydrolysate. By the other hand, the fermentation of both xylose and arabinose and capability of withstanding inhibitors are important characteristics of the strain assayed.


Assuntos
Arabinose/metabolismo , Celulose/metabolismo , Meios de Cultura/química , Saccharomycopsis/metabolismo , Saccharum/microbiologia , Xilose/metabolismo , Celulose/análise , Meios de Cultura/metabolismo , Fermentação , Filogenia , Saccharomycopsis/genética , Saccharomycopsis/crescimento & desenvolvimento , Saccharomycopsis/isolamento & purificação , Saccharum/química , Saccharum/metabolismo , Xilitol/metabolismo
14.
Appl Microbiol Biotechnol ; 100(1): 505-18, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26450509

RESUMO

Soluble N-ethylmaleimide-sensitive factor attachment receptor proteins (SNAREs) are essential components of the yeast protein-trafficking machinery and are required at the majority of membrane fusion events in the cell, where they facilitate SNARE-mediated fusion between the protein transport vesicles, the various membrane-enclosed organelles and, ultimately, the plasma membrane. We have demonstrated an increase in secretory titers for the Talaromyces emersonii Cel7A (Te-Cel7A, a cellobiohydrolase) and the Saccharomycopsis fibuligera Cel3A (Sf-Cel3A, a ß-glucosidase) expressed in Saccharomyces cerevisiae through single and co-overexpression of some of the endoplasmic reticulum (ER)-to-Golgi SNAREs (BOS1, BET1, SEC22 and SED5). Overexpression of SED5 yielded the biggest improvements for both of the cellulolytic reporter proteins tested, with maximum increases in extracellular enzyme activity of 22 % for the Sf-Cel3A and 68 % for the Te-Cel7A. Co-overexpression of the ER-to-Golgi SNAREs yielded proportionately smaller increases for the Te-Cel7A (46 %), with the Sf-Cel3A yielding no improvement. Co-overexpression of the most promising exocytic SNARE components identified in literature for secretory enhancement of the cellulolytic proteins tested (SSO1 for Sf-Cel3A and SNC1 for Te-Cel7A) with the most effective ER-to-Golgi SNARE components identified in this study (SED5 for both Sf-Cel3A and Te-Cel7A) yielded variable results, with Sf-Cel3A improved by 131 % and Te-Cel7A yielding no improvement. Improvements were largely independent of gene dosage as all strains only integrated single additional SNARE gene copies, with episomal variance between the most improved strains shown to be insignificant. This study has added further credence to the notion that SNARE proteins fulfil an essential role within a larger cascade of secretory machinery components that could contribute significantly to future improvements to S. cerevisiae as protein production host.


Assuntos
Celulase/metabolismo , Expressão Gênica , Proteínas SNARE/biossíntese , Saccharomyces cerevisiae/metabolismo , Celulase/genética , Eurotiales/enzimologia , Eurotiales/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Proteínas SNARE/genética , Saccharomyces cerevisiae/genética , Saccharomycopsis/enzimologia , Saccharomycopsis/genética
15.
J Biotechnol ; 206: 79-88, 2015 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-25937452

RESUMO

The ß-glucosidases from Saccharomycopsis fibuligera (SfBGL1) and Trichoderma reesei (TrBGL1) were cloned and expressed in Pichia pastoris. Methanol concentration and pH significantly affected the production. The combined effects of the two factors were optimized by using the response surface method, resulting in a 137% and 84% increase in rTrBGL1 and rSfBGL1 yield compared to single-factor experiment. Structure and biochemical properties of the two enzyme were investigated and compared. They belong to glycosyl hydrolase family 3 and exhibit significant hydrolysis activity and low-level transglycosylation activity. The two enzymes show similar substrate affinity and ion-tolerance, and both of them can be activated by Cr(6+), Mn(2+) and Fe(2+). The rSfBGL1 has greater catalytic speed, higher specific activity and acid-tolerance than rTrBGL1, but rTrBGL1 is more thermostable and has higher optimal temperature than rSfBGL1. This study provides a useful and quick optimal method for recombinant enzyme production and makes a valuable comparison of biochemical properties, which opens important avenues of exploration for relationship between structure and function and further practical applications.


Assuntos
Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , beta-Glucosidase/química , beta-Glucosidase/metabolismo , Proteínas Fúngicas/genética , Hidrolases , Dados de Sequência Molecular , Pichia/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomycopsis/enzimologia , Saccharomycopsis/genética , Trichoderma/enzimologia , Trichoderma/genética , beta-Glucosidase/genética
16.
J Microbiol Biotechnol ; 25(8): 1324-7, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25975612

RESUMO

The nucleotide sequence of the TRP1 gene encoding phosphoribosyl anthranilate isomerase in yeast Saccharomycopsis fibuligera was determined by degenerate polymerase chain reaction and genome walking. Sequence analysis revealed the presence of an uninterrupted open-reading frame of 759 bp, including the stop codon, encoding a 252 amino acid residue. The deduced amino acid sequence of Trp1 in S. fibuligera was 43.5% homologous to that of Komagataella pastoris. The cloned TRP1 gene (SfTRP1) complemented the trp1 mutation in Saccharomyces cerevisiae, suggesting that it encodes a functional TRP1 in S. fibuligera. A new auxotrophic marker to engineer starch-degrading yeast S. fibuligera is now available. The GenBank Accession No. for SfTRP1 is KR078268.


Assuntos
Aldose-Cetose Isomerases/genética , Aldose-Cetose Isomerases/isolamento & purificação , Saccharomycopsis/enzimologia , Aldose-Cetose Isomerases/deficiência , Sequência de Aminoácidos , Clonagem Molecular , DNA Fúngico/química , DNA Fúngico/genética , Teste de Complementação Genética , Dados de Sequência Molecular , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae , Saccharomycopsis/genética , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos
17.
J Biotechnol ; 195: 8-14, 2015 Feb 10.
Artigo em Inglês | MEDLINE | ID: mdl-25533400

RESUMO

Native enzyme and a mutant containing an extra disulphide bridge of recombinant Saccharomycopsis fibuligera R64 α-amylase, designated as Sfamy01 and Sfamy02, respectively, have successfully been overexpressed in the yeast Pichia pastoris KM71H. The purified α-amylase variants demonstrated starch hydrolysis resulting in a mixture of maltose, maltotriose, and glucose, similar to the wild type enzyme. Introduction of the disulphide bridge shifted the melting temperature (TM) from 54.5 to 56 °C and nearly tripled the enzyme half-life time at 65 °C. The two variants have similar kcat/KM values. Similarly, inhibition by acarbose was only slightly affected, with the IC50 of Sfamy02 for acarbose being 40 ± 3.4 µM, while that of Sfamy01 was 31 ± 3.9 µM. On the other hand, the IC50 of Sfamy02 for EDTA was 0.45 mM, nearly two times lower than that of Sfamy01 at 0.77 mM. These results show that the introduction of a disulphide bridge had little effect on the enzyme activity, but made the enzyme more susceptible to calcium ion extraction. Altogether, the new disulphide bridge improved the enzyme stability without affecting its activity, although minor changes in the active site environment cannot be excluded.


Assuntos
Dissulfetos/química , Proteínas Fúngicas/química , Proteínas Recombinantes/química , Saccharomycopsis/enzimologia , alfa-Amilases/química , Dissulfetos/metabolismo , Estabilidade Enzimática , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Modelos Moleculares , Pichia/genética , Pichia/metabolismo , Estrutura Terciária de Proteína , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomycopsis/genética , alfa-Amilases/genética , alfa-Amilases/metabolismo
18.
Arch Biochem Biophys ; 564: 219-28, 2014 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-25447817

RESUMO

Lodderomyces elongisporus LH703 isolated from soil samples contained three novel aldo-keto reductases (AKRs) (LEAKR 48, LEAKR 49, and LEAKR 50). The three enzymes were cloned, expressed, and purified to homogeneity for characterization. These three AKRs shared <40% amino acid identity with each other. LEAKR 50 was identified as a member of AKR3 family, whereas the other two LEAKRs were identified as members of two novel AKR families, respectively. All the three AKRs required nicotinamide adenine dinucleotide phosphate as a cofactor. However, they showed diverse characteristics, including optimum catalyzing conditions, resistance to adverse reaction conditions, and substrate specificity. LEAKR 50 was estimated to be a promising biocatalyst that could reduce ethyl 4-chloroacetoacetate with high enantiomeric excess (98% e. e.) and high activity residue under adverse conditions.


Assuntos
Acetoacetatos/química , Aldeído Redutase/química , Proteínas Fúngicas/química , NAD/química , Saccharomycopsis/enzimologia , Aldeído Redutase/genética , Aldo-Ceto Redutases , Sequência de Aminoácidos , Clonagem Molecular , Proteínas Fúngicas/genética , Dados de Sequência Molecular , Saccharomycopsis/genética
19.
Int J Syst Evol Microbiol ; 64(Pt 6): 2169-2175, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24682703

RESUMO

Three yeast strains related to members of the genus Saccharomycopsis were isolated. One strain (CLIB 1310) was isolated from olive brines of fermented black olives in France and two strains (CLIB 1454 and CLIB 1455) were isolated from a plant in French Guiana. Sequence analyses based on the D1/D2 domains of the nuclear large subunit rRNA gene, small-subunit rRNA gene and partial EF-1α gene revealed that the strains represented two novel taxa exhibiting extensive sequence divergence from the previously described species of the genus Saccharomycopsis. Two novel species are described to accommodate these newly isolated strains: Saccharomycopsis olivae sp. nov. (type strain CLIB 1310(T) = CBS 12701(T)) and Saccharomycopsis guyanensis sp. nov. (type strain CLIB 1455(T) = CBS 12914(T) and strain CLIB 1454). Both strains CLIB 1454 and CLIB 1455(T) displayed identical sequences but differed in their ability to metabolize sorbitol and in their morphology on agar medium. Candida amapae, Candida lassensensis and Arthroascus babjevae belonging to the Saccharomycopsis clade, are reassigned to Saccharomycopsis as novel combinations.


Assuntos
Olea/microbiologia , Filogenia , Saccharomycopsis/classificação , Animais , DNA Fúngico/genética , Fermentação , França , Guiana Francesa , Gastrópodes/genética , Dados de Sequência Molecular , Técnicas de Tipagem Micológica , Fator 1 de Elongação de Peptídeos/genética , RNA Ribossômico/genética , Saccharomycopsis/genética , Saccharomycopsis/isolamento & purificação , Sais , Análise de Sequência de DNA
20.
Mol Biotechnol ; 56(1): 72-8, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23836443

RESUMO

It has been reported that trehalose plays an important role in stress tolerance in yeasts. Therefore, in order to construct a stably recombinant Saccharomyces sp. W0 with higher ethanol tolerance, the TPS1 gene encoding 6-phosphate-trehalose synthase cloned from Saccharomycopsis fibuligera A11 was ligated into the 18S rDNA integration vector pMIRSC11 and integrated into chromosomal DNA of Saccharomyces sp. W0. The transformant Z8 obtained had the content of 6.23 g of trehalose/100 g of cell dry weight, while Saccharomyces sp. W0 only contained 4.05 g of trehalose/100 g of cell dry weight. The transformant Z8 also had higher ethanol tolerance (cell survival was 25.1 % at 18 ml of ethanol/100 ml of solution) and trehalose-6-phosphate synthase (Tps1) activity (1.3 U/mg) and produced more ethanol (16.4 ml of ethanol/100 ml of medium) than Saccharomyces sp. W0 (cell survival was 12.1 % at 18 ml of ethanol/100 ml of solution, Tps1 activity was 0.8 U/mg and the produced ethanol concentration was 14.2 ml of ethanol/100 ml of medium) under the same conditions. The results show that trehalose indeed can play an important role in ethanol tolerance and ethanol production by Saccharomyces sp. W0.


Assuntos
Etanol/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Saccharomyces/metabolismo , Saccharomycopsis/genética , Trealose/metabolismo , Clonagem Molecular , Fermentação , Genes Fúngicos , Saccharomyces/classificação , Saccharomyces/genética , Saccharomycopsis/classificação , Saccharomycopsis/enzimologia , Transformação Genética
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