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1.
Biochim Biophys Acta Bioenerg ; 1865(3): 149046, 2024 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-38642871

RESUMO

The respiratory chain alternative enzymes (AEs) NDX and AOX from the tunicate Ciona intestinalis (Ascidiacea) have been xenotopically expressed and characterized in human cells in culture and in the model organisms Drosophila melanogaster and mouse, with the purpose of developing bypass therapies to combat mitochondrial diseases in human patients with defective complexes I and III/IV, respectively. The fact that the genes coding for NDX and AOX have been lost from genomes of evolutionarily successful animal groups, such as vertebrates and insects, led us to investigate if the composition of the respiratory chain of Ciona and other tunicates differs significantly from that of humans and Drosophila, to accommodate the natural presence of AEs. We have failed to identify in tunicate genomes fifteen orthologous genes that code for subunits of the respiratory chain complexes; all of these putatively missing subunits are peripheral to complexes I, III and IV in mammals, and many are important for complex-complex interaction in supercomplexes (SCs), such as NDUFA11, UQCR11 and COX7A. Modeling of all respiratory chain subunit polypeptides of Ciona indicates significant structural divergence that is consistent with the lack of these fifteen clear orthologous subunits. We also provide evidence using Ciona AOX expressed in Drosophila that this AE cannot access the coenzyme Q pool reduced by complex I, but it is readily available to oxidize coenzyme Q molecules reduced by glycerophosphate oxidase, a mitochondrial inner membrane-bound dehydrogenase that is not involved in SCs. Altogether, our results suggest that Ciona AEs might have evolved in a mitochondrial inner membrane environment much different from that of mammals and insects, possibly without SCs; this correlates with the preferential functional interaction between these AEs and non-SC dehydrogenases in heterologous mammalian and insect systems. We discuss the implications of these findings for the applicability of Ciona AEs in human bypass therapies and for our understanding of the evolution of animal respiratory chain.


Assuntos
Ciona intestinalis , Proteínas Mitocondriais , Fosforilação Oxidativa , Animais , Proteínas Mitocondriais/genética , Proteínas Mitocondriais/metabolismo , Ciona intestinalis/genética , Ciona intestinalis/enzimologia , Humanos , Oxirredutases/genética , Oxirredutases/metabolismo , Subunidades Proteicas/metabolismo , Subunidades Proteicas/genética , Drosophila melanogaster/genética , Drosophila melanogaster/enzimologia , Urocordados/genética , Urocordados/enzimologia , Transporte de Elétrons , Complexo I de Transporte de Elétrons/metabolismo , Complexo I de Transporte de Elétrons/genética , Filogenia , Proteínas de Plantas
2.
Biol Bull ; 245(1): 1-8, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38820291

RESUMO

AbstractWe describe the cloning and expression of a nonreceptor tyrosine kinase, cymric (Uro-1), a HTK-16-like (HydraTyrosineKinase-16) gene, identified in a subtractive screen for maternal ascidian cDNAs in Molgula oculata, an ascidian species with a tadpole larva. The cymric gene encodes a 4-kb mRNA expressed in gonads, eggs, and embryos in the tailed M. oculata but is not detected in eggs or embryos of the closely related tailless species Molgula occulta. There is a large insertion in cymric in the M. occulta genome, as shown by transcriptome and genome analyses, resulting in it becoming a pseudogene. The cymric amino acid sequence encodes a nonreceptor tyrosine kinase with an N-terminal region containing two SH2 domains and five ankyrin repeats, similar to the HTK-16-like gene found in other ascidians. Thus, the ascidian cymric genes are members of the SHARK (Src-homology ankyrin-repeat containing tyrosine kinase) family of nonreceptor tyrosine kinases, which are found throughout invertebrates and missing from vertebrates. We show that cymric is lacking the tyrosine kinase domain in the tailless M. occulta, although the truncated mRNA is still expressed in transcriptome data. This maternal and zygotic HTK-16-like tyrosine kinase is another described pseudogene from M. occulta and appears not to be necessary for adult development.


Assuntos
Proteínas Tirosina Quinases , Urocordados , Animais , Urocordados/genética , Urocordados/enzimologia , Proteínas Tirosina Quinases/genética , Proteínas Tirosina Quinases/metabolismo , Sequência de Aminoácidos , Zigoto , Pseudogenes/genética , Filogenia
3.
Dev Biol ; 460(2): 155-163, 2020 04 15.
Artigo em Inglês | MEDLINE | ID: mdl-31857067

RESUMO

Unfertilized eggs of most animals are arrested at a certain point in the meiotic cell cycles. Reinitiation of meiosis and the start of embryogenesis are triggered by fertilization. This arrest is essential for preventing parthenogenetic activation and for promoting proper initiation of development by fertilization. In the larvacean Oikopleura dioica, which is a simple model organism for studies of chordate development, the unfertilized egg is arrested at metaphase of meiosis I. We show here that protein phosphatase 2A (PP2A) is essential for maintenance of meiotic arrest after spawning of oocytes. Knockdown (KD) of the maternal PP2A catalytic subunit, which was found in functional screening of maternal factors, caused unfertilized eggs to spontaneously release polar bodies after spawning, and then start pseudo-cleavages without fertilization, namely, parthenogenesis. Parthenogenetic embryos failed to undergo proper mitosis and cytokinesis because of lack of a centrosome, which is to be brought into the egg by a sperm. Activation of the KD oocytes was triggered by possible rise of ambient and intracellular pH upon their release from the gonad into seawater at spawning. Live recording of intracellular calcium level of the KD oocytes indicated that the pH rise caused an aberrant Ca2+ burst, which mimicked the Ca2+ burst that occurs at fertilization. Then, the aberrant Ca2+ burst triggered meiosis resumption through Calcium/calmodulin-dependent protein kinase (CaMK II). Therefore, PP2A is essential for maintenance of meiotic arrest and prevention of parthenogenesis by suppressing the aberrant Ca2+ burst at spawning.


Assuntos
Sinalização do Cálcio/fisiologia , Pontos de Checagem do Ciclo Celular/fisiologia , Meiose/fisiologia , Partenogênese/fisiologia , Proteína Fosfatase 2/metabolismo , Urocordados/enzimologia , Animais
4.
J Exp Biol ; 222(Pt 15)2019 08 05.
Artigo em Inglês | MEDLINE | ID: mdl-31253711

RESUMO

The colonial tunicate Botrylloides leachii is exceptional at regenerating from a piece of vascular tunic after loss of all adults from the colony. Previous transcriptome analyses indicate a brief period of healing before regeneration of a new adult (zooid) in as little as 8-10 days. However, there is little understanding of how the resulting changes to gene expression, required to drive regeneration, are initiated and how the overall process is regulated. Rapid changes to transcription often occur in response to chromatin changes, mediated by histone modifications such as histone acetylation. Here, we investigated a group of key epigenetic modifiers, histone deacetylases (HDAC), which are known to play an important role in many biological processes such as development, healing and regeneration. Through our transcriptome data, we identified and quantified the expression levels of HDAC and histone acetyltransferase enzymes during whole-body regeneration (WBR). To determine whether HDAC activity is required for WBR, we inhibited its action using valproic acid and trichostatin A. HDAC inhibition prevented the final morphological changes normally associated with WBR and resulted in aberrant gene expression. Botrylloides leachii genes including Slit2, TGF-ß, Piwi and Fzd4 all showed altered mRNA levels upon HDAC inhibition in comparison with the control samples. Additionally, atypical expression of Bl_Piwi was found in immunocytes upon HDAC inhibition. Together, these results show that HDAC function, specifically HDAC I/IIa class enzymes, are vital for B. leachii to undergo WBR successfully.


Assuntos
Histona Desacetilases/metabolismo , Regeneração , Urocordados/fisiologia , Animais , Perfilação da Expressão Gênica , Regulação da Expressão Gênica/efeitos dos fármacos , Inibidores de Histona Desacetilases/farmacologia , Histona Desacetilases/genética , Ácidos Hidroxâmicos/farmacologia , RNA Mensageiro , Urocordados/enzimologia , Urocordados/genética , Urocordados/metabolismo , Ácido Valproico/farmacologia
5.
Biomacromolecules ; 18(11): 3687-3694, 2017 Nov 13.
Artigo em Inglês | MEDLINE | ID: mdl-28954511

RESUMO

Layer-by-layer peeling of surface molecules of native cellulose microfibrils was performed using a repeated sequential process of 2,2,6,6-tetramethylpiperidine-1-oxyl radical-mediated oxidation followed by hot alkali extraction. Both highly crystalline algal and tunicate celluloses and low-crystalline cotton and wood celluloses were investigated. Initially, the C6-hydroxy groups of the outermost surface molecules of each algal cellulose microfibril facing the exterior had the gauche-gauche (gg) conformation, whereas those facing the interior had the gauche-trans (gt) conformation. All the other C6-hydroxy groups of the cellulose molecules inside the microfibrils contributing to crystalline cellulose I had the trans-gauche (tg) conformation. After surface peeling, the originally second-layer molecules from the microfibril surface became the outermost surface molecules, and the original tg conformation changed to gg and gt conformations. The plant cellulose microfibrils likely had disordered structures for both the outermost surface and second-layer molecules, as demonstrated using the same layer-by-layer peeling technique.


Assuntos
Parede Celular/química , Celulose/química , Microfibrilas/química , Madeira/química , Animais , Parede Celular/enzimologia , Óxidos N-Cíclicos/química , Conformação Molecular , Oxirredução , Urocordados/enzimologia , Madeira/enzimologia
6.
Mitochondrial DNA A DNA Mapp Seq Anal ; 28(6): 810-813, 2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-27871204

RESUMO

Ascidians (tunicates) are marine benthic organisms possessing various pharmacological activities, including anti-oxidant, anti-tumour, antimicrobial, etc. They also play a key role as model organisms to study various neurobehavioral disorders. Ascidian diversity is reportedly less in India due to lack of taxonomists as well as the limitations in morphology based taxonomy. Molecular taxonomy, comprising the sequencing of cytochrome c oxidase 1 gene (barcode region) otherwise known as DNA barcoding reduces these bottlenecks. Since several species of the family Didemnidae closely resemble in morphology, the present study was aimed to develop DNA barcodes of a colonial ascidian, Lissoclinum fragile belonging to the family Didemnidae. CO1 gene of L. fragile from Thoothukudi, Mandapam, and Vizhinjam waters were sequenced and submitted in GenBank, NCBI through Barcode submission tool. BLAST results showed maximum identity (97-100%) for L. fragile collected from different stations. The pairwise genetic distances within species and genera were calculated using Kimura two parameter (K2P) and the phylogenetic tree was constructed using Neighbour-Joining Tree.


Assuntos
Código de Barras de DNA Taxonômico , Genes Mitocondriais , Filogenia , Urocordados/genética , Animais , Complexo IV da Cadeia de Transporte de Elétrons/genética , Índia , Análise de Sequência de DNA , Urocordados/classificação , Urocordados/enzimologia
7.
Biochem Biophys Res Commun ; 475(1): 107-12, 2016 06 17.
Artigo em Inglês | MEDLINE | ID: mdl-27178210

RESUMO

Ovalbumin (OA) is the most abundant ingredient of chicken egg-white allergenic proteins. In the present study we investigated the possibility of reducing OA allergenicity by treatment with a natural protein exhibiting N-acetylglucosaminidase (NA) activity. Ascidian is cultivated as a food resource in northeast Asia. The ascidian viscera NA (AVNA) with almost no other exoglycosidases or proteolytic enzymes was isolated by applying size-exclusion chromatography to a protein precipitate of ascidian viscera. Intact OA was mixed with AVNA containing 0.2, 1.0, and 5.0 Units of NA. Anion-exchange chromatography was then used to isolate OA from AVNA-treated OA. The electrophoretic patterns and N-glycans of each isolated OA from AVNA-treated OA (iOA) were analyzed, and the terminal N-acetylglucosamines of iOA were selectively cleaved with no other degradation occurring. A competitive indirect enzyme-linked immunosorbent assay using rabbit anti-OA sera was performed to investigate the allergenicity of iOA, which was found to be significantly reduced depending on the increased NA activity compared to that of intact OA. These results indicate that OA allergenicity was reduced using a simple and mild treatment process with AVNA, and suggest that ascidian NA is an efficient natural protein for reducing the allergenicity of OA without requiring the use of harsh physical treatments or chemical conjugation.


Assuntos
Acetilglucosaminidase/metabolismo , Alérgenos/metabolismo , Ovalbumina/metabolismo , Urocordados/enzimologia , Acetilglucosaminidase/isolamento & purificação , Alérgenos/imunologia , Animais , Galinhas , Clara de Ovo/análise , Hipersensibilidade Alimentar/imunologia , Hipersensibilidade Alimentar/metabolismo , Hipersensibilidade Alimentar/prevenção & controle , Ovalbumina/imunologia , Coelhos , Vísceras/enzimologia
8.
Mol Reprod Dev ; 83(4): 347-58, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26896838

RESUMO

We previously reported that the sperm trypsin-like protease HrAcrosin and its precursor HrProacrosin participate in fertilization of the ascidian Halocynthia roretzi. The HrProacrosin gene is annotated in the H. roretzi genome database as Harore.CG.MTP2014.S89.g15383; our previously reported sequence of HrProacrosin gene appeared to include four nucleotides inserted near the 3'-end of HrProacrosin, resulting in a frame-shift mutation and a premature termination codon. The gene architecture of HrProacrosin and Harore.CG.MTP2014.S89.g15383 resembles that of Xenopus laevis ovochymase-1/OVCH1 and ovochymase-2/OVCH2, which encode egg extracellular polyproteases. Considering these new observations, we evaluated the cDNA cloning, expression, localization, and function of Harore.CG.MTP2014.S89.g15383, herein designated as HrOvochymase/HrOVCH. We found that HrOVCH cDNA consists of a single open reading frame of 1,575 amino acids, containing a signal peptide, three trypsin-like protease domains, and six CUB domains. HrOVCH was transcribed by the testis and ovary, but the majority of protein exists in ovarian follicle cells surrounding eggs. An anti-HrOVCH antibody inhibited elevation of the vitelline coat at a late stage of oogenesis, during the period when self-sterility is acquired. As trypsin inhibitors are reported to block the acquisition of self-sterility during oogenesis, whereas trypsin induces the acquisition of self-sterility and elevation of the vitelline coat in defolliculated ovarian eggs, we propose that HrOVCH may play a role in the acquisition of self-sterility by late-stage H. roretzi oocytes.


Assuntos
Endopeptidases/genética , Oogênese , Urocordados/enzimologia , Animais , Clonagem Molecular , DNA Complementar , Endopeptidases/imunologia , Endopeptidases/metabolismo , Fertilização , Urocordados/citologia , Urocordados/genética
9.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(5): 3573-6, 2016 09.
Artigo em Inglês | MEDLINE | ID: mdl-26287994

RESUMO

BACKGROUND: More than 50 ascidian species distributed in the Palk Bay, Southeast coat of India. Up to a very few molecular work has been performed to determine the evolutionary relationships of ascidians in the world. OBJECTIVES: Present study explored the value of mtDNA data in assessing phylogenetic relationships within the family Ascidiacea, Didemnidae, Styelidae, and molecular identification of ascidians from the Palk Bay, Southeast coast of India. MATERIALS AND METHODS: The phylogeny analysis was executed based on mitochondrial cytochrome oxidase subunit I (COI) sequences of ascidian species. A BLASTN search can be run to determine the similarity of an unknown DNA sequence (query) with the collection of all known DNA sequences in GenBank. RESULT: The BLASTN results showed that Didemnum candidum, Ascidia ahodori and Styela clava match the other listings for these species in GenBank. Mitochondrial COI gene sequences of collected ascidians were submitted to GenBank and obtained the accession numbers. CONCLUSION: This study is the first report of molecular identification of ascidian species of the Palk Bay, Southeast coast of India. This information about Palk Bay ascidian communities provides a baseline of general biodiversity of that ecosystem.


Assuntos
Urocordados/genética , Animais , Baías , Biodiversidade , DNA Mitocondrial/genética , DNA Mitocondrial/isolamento & purificação , Complexo IV da Cadeia de Transporte de Elétrons/genética , Genoma Mitocondrial , Índia , Tipagem Molecular , Filogenia , Urocordados/enzimologia , Sequenciamento Completo do Genoma
10.
Development ; 140(22): 4583-93, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24194472

RESUMO

The fertilising sperm triggers a transient Ca(2+) increase that releases eggs from cell cycle arrest in the vast majority of animal eggs. In vertebrate eggs, Erp1, an APC/C(cdc20) inhibitor, links release from metaphase II arrest with the Ca(2+) transient and its degradation is triggered by the Ca(2+)-induced activation of CaMKII. By contrast, many invertebrate groups have mature eggs that arrest at metaphase I, and these species do not possess the CaMKII target Erp1 in their genomes. As a consequence, it is unknown exactly how cell cycle arrest at metaphase I is achieved and how the fertilisation Ca(2+) transient overcomes the arrest in the vast majority of animal species. Using live-cell imaging with a novel cyclin reporter to study cell cycle arrest and its release in urochordate ascidians, the closest living invertebrate group to the vertebrates, we have identified a new signalling pathway for cell cycle resumption in which CaMKII plays no part. Instead, we find that the Ca(2+)-activated phosphatase calcineurin (CN) is required for egg activation. Moreover, we demonstrate that parthenogenetic activation of metaphase I-arrested eggs by MEK inhibition, independent of a Ca(2+) increase, requires the activity of a second egg phosphatase: PP2A. Furthermore, PP2A activity, together with CN, is required for normal egg activation during fertilisation. As ascidians are a sister group of the vertebrates, we discuss these findings in relation to cell cycle arrest and egg activation in chordates.


Assuntos
Proteína Quinase Tipo 2 Dependente de Cálcio-Calmodulina/metabolismo , Pontos de Checagem do Ciclo Celular , Meiose , Óvulo/citologia , Fosfoproteínas Fosfatases/metabolismo , Urocordados/citologia , Urocordados/enzimologia , Ciclossomo-Complexo Promotor de Anáfase/antagonistas & inibidores , Ciclossomo-Complexo Promotor de Anáfase/metabolismo , Animais , Antígenos Transformantes de Poliomavirus/metabolismo , Calcineurina/metabolismo , Inibidores de Calcineurina , Cálcio/farmacologia , Sinalização do Cálcio/efeitos dos fármacos , Pontos de Checagem do Ciclo Celular/efeitos dos fármacos , Ciclina B/metabolismo , Ativação Enzimática/efeitos dos fármacos , Fertilização/efeitos dos fármacos , Mamíferos/metabolismo , Meiose/efeitos dos fármacos , Metáfase/efeitos dos fármacos , Proteínas Quinases Ativadas por Mitógeno/metabolismo , Modelos Biológicos , Óvulo/enzimologia , Proteína Fosfatase 2/metabolismo , Ratos , Especificidade por Substrato/efeitos dos fármacos , Urocordados/efeitos dos fármacos
11.
Dalton Trans ; 42(33): 11921-5, 2013 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-23661167

RESUMO

In a previous study, Vanabin2, a member of a family of V(IV)-binding proteins, or Vanabins, was shown to act as a V(V)-reductase. The current study assesses the ability of Vanabin2 to reduce various transition metal ions in vitro. An NADPH-coupled oxidation assay yielded no evidence of reduction activity with the hexavalent transition metal anions, Mo(VI)O4(2-) and W(VI)O4(2-), or with three divalent cations, Mn(II), Ni(II), and Co(II). Although Cu(II) is readily reduced by glutathione and is gradually oxidized in air, this process was not affected by the presence of Vanabin2. In the experiments conducted thus far, Vanabin2 acts only as a V(V)-reductase. This high selectivity may account for the metal ion selectivity of vanadium accumulation in ascidians.


Assuntos
Metais Pesados/metabolismo , Oxirredutases/metabolismo , Animais , Cinética , Metais Pesados/química , NADP/química , NADP/metabolismo , Oxirredução , Oxirredutases/química , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Urocordados/enzimologia
12.
Dev Growth Differ ; 55(5): 606-14, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23679913

RESUMO

A recent study has shown that in the budding tunicate Polyandrocarpa misakiensis, the mitochondrial respiratory chain (MRC) dramatically attenuates the gene activity during senescence. In this study, we examined the possible involvement of superoxide dismutase (SOD) in the attenuation of gene expression of cytochrome c oxidase subunit 1 (COX1) in aged zooids. By RT-PCR and in situ hybridization, Cu/Zn-SOD (SOD1) was found to be expressed in most cells and tissues of buds and juvenile zooids but showed a conspicuous decline in senescent adult zooids, except in the gonad tissue in which the cytoplasm of juvenile oocytes was stained heavily. This expression pattern of SOD1 was similar to that of COX1. In contrast to SOD1, Mn-SOD (SOD2) was expressed constitutively in both somatic and germline tissues of buds, juvenile zooids, and senescent adult zooids. Knockdown of SOD1 by RNAi diminished the gene activity of not only SOD1 but also of COX1. The resultant zooids had transient deficiencies in growth and budding, and they recovered from these deficiencies approximately 1 month later. Our results indicate that in P. misakiensis, SOD1 is a senescence-associated nuclear gene and that the experimental decline in SOD1 gene expression accompanies the attenuation of MRC gene activity. Although it is uncertain how SOD1 is downregulated during tunicate senescence, the decreased SOD1 activity could be one of the main causes of MRC gene attenuation during normal senescence.


Assuntos
Envelhecimento/genética , Complexo IV da Cadeia de Transporte de Elétrons/genética , Superóxido Dismutase/genética , Urocordados/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Núcleo Celular/genética , Regulação da Expressão Gênica no Desenvolvimento , Regulação Enzimológica da Expressão Gênica , Genes Mitocondriais/genética , Hibridização In Situ , Dados de Sequência Molecular , Interferência de RNA , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Superóxido Dismutase-1 , Urocordados/enzimologia , Urocordados/crescimento & desenvolvimento
13.
PLoS One ; 7(9): e45431, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23029005

RESUMO

Aurora kinases are key proteins found throughout the eukaryotes that control mitotic progression. Vertebrate Aurora-A and B kinases are thought to have evolved from a single Aurora-kinase isoform closest to that found in present day urochordates. In urochordate ascidians Aurora binds both TPX2 (a vertebrate AURKA partner) and INCENP (a vertebrate AURKB partner) and localizes to centrosomes and spindle microtubules as well as chromosomes and midbody during both meiosis and mitosis. Ascidian Aurora also displays this localization pattern during mitosis in echinoderms, strengthening the idea that non-vertebrate deuterostomes such as the urochordates and echinoderms possess a single form of Aurora kinase that has properties of vertebrate Aurora-kinase A and B. In the ascidian, TPX2 localizes to the centrosome and the spindle poles also as in vertebrates. However, we were surprised to find that TPX2 also localized strongly to the midbody in ascidian eggs and embryos. We thus examined more closely Aurora localization to the midbody by creating two separate point mutations of ascidian Aurora predicted to perturb binding to TPX2. Both forms of mutated Aurora behaved as predicted: neither localized to spindle poles where TPX2 is enriched. Interestingly, neither form of mutated Aurora localized to the midbody where TPX2 is also enriched, suggesting that ascidian Aurora midbody localization required TPX2 binding in ascidians. Functional analysis revealed that inhibition of Aurora kinase with a pharmacological inhibitor or with a dominant negative kinase dead form of Aurora caused cytokinesis failure and perturbed midbody formation during polar body extrusion. Our data support the view that vertebrate Aurora-A and B kinases evolved from a single non-vertebrate deuterostome ancestor. Moreover, since TPX2 localizes to the midbody in ascidian eggs and cleavage stage embryos it may be worthwhile re-assessing whether Aurora A kinase or TPX2 localize to the midbody in eggs and cleavage stage embryos.


Assuntos
Embrião não Mamífero/enzimologia , Óvulo/enzimologia , Isoformas de Proteínas/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Urocordados/enzimologia , Animais , Aurora Quinases , Meiose/fisiologia , Mitose/fisiologia
14.
Methods Enzymol ; 516: 79-98, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23034225

RESUMO

The core scaffold of microbial tetrahydroisoquinoline antitumor antibiotics is biosynthesized by a nonribosomal peptide synthetase (NRPS) with novel functions, which catalyzes a highly unusual seven-step transformation involving multiple reductions of thioester intermediates and two rounds of the Pictet-Spengler reaction. The reaction mechanism of saframycin NRPS SfmC has been firmly established by a series of in vitro experiments using various substrate analogs, SfmC domain-deletion mutants and (2)H-labeled NADH and NADPH. The Pictet-Spengler reaction found in the biosynthesis of saframycin heavily relies on the chain length of the cryptic long acyl chain in the peptide substrates. This chapter describes protocols for biochemical characterization of the saframycin NRPS SfmC. They include (1) bioinformatic analysis of related gene clusters, (2) synthesis of intermediate analogs, and (3) enzymatic reactions for both analytical and preparative scale.


Assuntos
Antibióticos Antineoplásicos/biossíntese , Bactérias/enzimologia , Peptídeo Sintases/metabolismo , Poríferos/enzimologia , Tetra-Hidroisoquinolinas/metabolismo , Urocordados/enzimologia , Animais , Antibióticos Antineoplásicos/química , Bactérias/química , Bactérias/genética , Biocatálise , Clonagem Molecular , Biologia Computacional , Escherichia coli/genética , Escherichia coli/metabolismo , Ácidos Graxos/química , Ácidos Graxos/metabolismo , Expressão Gênica , Família Multigênica , NADP/química , NADP/metabolismo , Peptídeo Sintases/química , Peptídeo Sintases/genética , Poríferos/química , Poríferos/genética , Estrutura Terciária de Proteína , Tetra-Hidroisoquinolinas/química , Urocordados/química , Urocordados/genética
15.
Mar Drugs ; 10(6): 1192-1202, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22822366

RESUMO

Genomic mining revealed one major nonribosomal peptide synthetase (NRPS) phylogenetic cluster in 12 marine sponge species, one ascidian, an actinobacterial isolate and seawater. Phylogenetic analysis predicts its taxonomic affiliation to the actinomycetes and hydroxy-phenyl-glycine as a likely substrate. Additionally, a phylogenetically distinct NRPS gene cluster was discovered in the microbial metagenome of the sponge Aplysina aerophoba, which shows highest similarities to NRPS genes that were previously assigned, by ways of single cell genomics, to a Chloroflexi sponge symbiont. Genomic mining studies such as the one presented here for NRPS genes, contribute to on-going efforts to characterize the genomic potential of sponge-associated microbiota for secondary metabolite biosynthesis.


Assuntos
Metagenoma , Peptídeo Sintases/genética , Poríferos/enzimologia , Poríferos/microbiologia , Água do Mar/microbiologia , Actinobacteria/enzimologia , Actinobacteria/genética , Animais , Cosmídeos , Família Multigênica , Filogenia , Urocordados/enzimologia , Urocordados/genética
17.
Dev Comp Immunol ; 38(2): 232-42, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22698614

RESUMO

Phenoloxidases (POs) and haemocyanins constitute a family of copper-containing proteins widely distributed among invertebrates. Both of them are able, under appropriate conditions, to convert polyphenols to quinones and induce cytotoxicity through the production of reactive oxygen species, a fundamental event in many immune responses. In ascidians, PO activity has been described and studied in both solitary and colonial species and the enzyme is involved in inflammatory and cytotoxic reactions against foreign cells or molecules, and in the formation of the cytotoxic foci which characterise the nonfusion reaction of botryllids. Expressed genes for two putative POs (CiPO1 and CiPO2) have been recently identified in C. intestinalis. In the present study, we determined the cDNA sequences of two haemocyanin-like proteins from two colonial ascidians: Botryllus schlosseri from the Mediterranean Sea and Polyandrocarpa misakiensis from Japan. Multiple sequence alignments evidenced the similarity between the above sequences and crustacean proPOs whereas the analysis of the three-dimensional structure reveals high similarity with arthropod haemocyanins which share common precursors with arthropod proPOs. Botryllus HLP grouped in the same cluster with Ciona POs, whereas Polyandrocarpa HLP clustered with arthropod haemocyanins; all of them share the full conservation of the six histidines at the two copper-binding sites as well as of other motifs, also found in arthropod haemocyanin subunits, involved in the regulation of enzyme activity. In situ hybridisation indicated that the genes are transcribed inside morula cells, a characteristic haemocyte type in ascidians where PO activity is located, at the beginning of their differentiation. These results represent a first attempt to identify candidate molecules responsible of the PO activity in compound ascidians.


Assuntos
Monofenol Mono-Oxigenase/genética , Monofenol Mono-Oxigenase/imunologia , Urocordados/enzimologia , Urocordados/imunologia , Sequência de Aminoácidos , Animais , Hemocianinas/química , Hemocianinas/genética , Hemocianinas/metabolismo , Hemócitos/química , Hemócitos/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Monofenol Mono-Oxigenase/química , Monofenol Mono-Oxigenase/metabolismo , Filogenia , Alinhamento de Sequência , Urocordados/genética
18.
PLoS One ; 7(1): e30473, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22303442

RESUMO

Considerable progress in our understanding of the population genetic changes associated with biological invasions has been made over the past decade. Using selectively neutral loci, it has been established that reductions in genetic diversity, reflecting founder effects, have occurred during the establishment of some invasive populations. However, some colonial organisms may actually gain an ecological advantage from reduced genetic diversity because of the associated reduction in inter-colony conflict. Here we report population genetic analyses, along with colony fusion experiments, for a highly invasive colonial ascidian, Didemnum vexillum. Analyses based on mitochondrial cytochrome oxidase I (COI) partial coding sequences revealed two distinct D. vexillum clades. One COI clade appears to be restricted to the probable native region (i.e., north-west Pacific Ocean), while the other clade is present in widely dispersed temperate coastal waters around the world. This clade structure was supported by 18S ribosomal DNA (rDNA) sequence data, which revealed a one base-pair difference between the two clades. Recently established populations of D. vexillum in New Zealand displayed greatly reduced COI genetic diversity when compared with D. vexillum in Japan. In association with this reduction in genetic diversity was a significantly higher inter-colony fusion rate between randomly paired New Zealand D. vexillum colonies (80%, standard deviation ±18%) when compared with colonies found in Japan (27%, standard deviation ±15%). The results of this study add to growing evidence that for colonial organisms reductions in population level genetic diversity may alter colony interaction dynamics and enhance the invasive potential of newly colonizing species.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons/genética , Variação Genética , Haplótipos/genética , Espécies Introduzidas , Urocordados/crescimento & desenvolvimento , Animais , Teorema de Bayes , Genética Populacional , Geografia , Japão , Dados de Sequência Molecular , Nova Zelândia , Filogenia , Urocordados/enzimologia , Urocordados/genética
19.
Biol Bull ; 221(1): 126-36, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21876115

RESUMO

Many invertebrates reproduce asexually by budding, but morphogenesis and the role of cell proliferation in this diverse and nonconserved regeneration-like process are generally poorly understood and particularly little investigated in didemnid ascidians. We here analyzed cell proliferation patterns and telomerase activity during budding in the colonial didemnid ascidian Diplosoma listerianum, with special focus on the thoracic bud where a new brain develops de novo. To help define developmental stages of the thoracic bud, the distribution of acetylated tubulin was also examined. We found extensive cell proliferation in both the thoracic and abdominal buds of D. listerianum as well as higher telomerase activity in bud tissue compared to adult tissues. In the parent adult, proliferation was found in various tissues, but was especially intense in the adult esophagus and epicardial structures that protrude into the proliferating and developing buds, confirming these tissues as the primary source of the cells that form the buds. The neural complex in the thoracic bud forms from a hollow tube that appears to separate into the neural gland and the cerebral ganglion. Whereas most of the bud undergoes proliferation, including the hollow tube and the neural gland, the cerebral ganglion shows little or no proliferation. Pulse-chase labeling experiments indicate that the ganglion, as well as the myocardium, in adult zooids are instead composed of postmitotic cells.


Assuntos
Proliferação de Células , Urocordados/citologia , Acetilação , Animais , Cílios/fisiologia , Regeneração , Telomerase/metabolismo , Tubulina (Proteína)/metabolismo , Urocordados/enzimologia , Urocordados/fisiologia
20.
J Exp Zool B Mol Dev Evol ; 316(4): 276-83, 2011 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-21548077

RESUMO

In organisms that propagate by agametic cloning, the parental body is the reproductive unit and fitness increases with clonal size, so that colonial metazoans, despite lack of experimental data, have been considered potentially immortal. Using asexual propagation rate as a measure of somatic performance, and telomerase activity and relative telomere length as molecular markers of senescence, old (7-12 years) asexual strains of a colonial ascidian, Diplosoma listerianum, were compared with their recent sexually produced progeny. We report for the first time evidence for long-term molecular senescence in asexual lineages of a metazoan, and that only passage between sexual generations provides total rejuvenation permitting indefinite propagation and growth. Thus, this colonial ascidian has not fully escaped ageing. The possibility of somatic replicative senescence also potentially helps to explain why metazoans, with the capacity for asexual propagation through agametic cloning, commonly undergo cycles of sexual reproduction in the wild.


Assuntos
Envelhecimento/fisiologia , Telomerase/deficiência , Urocordados/enzimologia , Animais , Hibridização in Situ Fluorescente , Reprodução Assexuada/fisiologia , Especificidade da Espécie , Estatísticas não Paramétricas , Urocordados/fisiologia
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