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1.
Arch Virol ; 169(8): 162, 2024 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-38985350

RESUMO

Using a high-throughput sequencing (HTS) approach, we report the discovery of a new alphasatellite identified in a winter barley plant collected in France in 2022 that was also infected by wheat dwarf virus (WDV). The presence of the satellite and of WDV was confirmed by several independent PCR assays, and the complete genome sequence was determined. The circular satellite genome is 1424 nt long and shows typical hallmarks of members of the subfamily Geminialphasatellitinae, including a replication-associated hairpin with a CAGTATTAC sequence and a Rep-encoding open reading frame (ORF). It also possesses a second ORF, embedded in a different frame within the Rep ORF, which is also observed in clecrusatellites and a few other members of the family Alphasatellitidae. Pairwise sequence comparisons and phylogenetic analysis showed that this satellite represents a novel species. Its closest relatives are in the genus Colecusatellite, but it likely represents a new genus given its divergence from other genera of the subfamily Geminialphasatellitinae. Given that WDV was the only virus observed in coinfection with the satellite, the name "wheat dwarf virus-associated alphasatellite" is proposed for this novel agent.


Assuntos
Genoma Viral , Hordeum , Fases de Leitura Aberta , Filogenia , Doenças das Plantas , França , Hordeum/virologia , Doenças das Plantas/virologia , Genoma Viral/genética , Geminiviridae/genética , Geminiviridae/classificação , Geminiviridae/isolamento & purificação , Vírus Satélites/genética , Vírus Satélites/classificação , Vírus Satélites/isolamento & purificação , Sequenciamento de Nucleotídeos em Larga Escala
2.
J Virol ; 95(21): e0043221, 2021 10 13.
Artigo em Inglês | MEDLINE | ID: mdl-34406866

RESUMO

Cassava mosaic disease (CMD), which is caused by single-stranded DNA begomoviruses, severely limits cassava production across Africa. A previous study showed that CMD symptom severity and viral DNA accumulation increase in cassava in the presence of a DNA sequence designated SEGS-2 (sequence enhancing geminivirus symptoms). We report here that when SEGS-2 is coinoculated with African cassava mosaic virus (ACMV) onto Arabidopsis thaliana, viral symptoms increase. Transgenic Arabidopsis with an integrated copy of SEGS-2 inoculated with ACMV also display increased symptom severity and viral DNA levels. Moreover, SEGS-2 enables Cabbage leaf curl virus (CaLCuV) to infect a geminivirus-resistant Arabidopsis thaliana accession. Although SEGS-2 is related to cassava genomic sequences, an earlier study showed that it occurs as episomes and is packaged into virions in CMD-infected cassava and viruliferous whiteflies. We identified SEGS-2 episomes in SEGS-2 transgenic Arabidopsis. The episomes occur as both double-stranded and single-stranded DNA, with the single-stranded form packaged into virions. In addition, SEGS-2 episomes replicate in tobacco protoplasts in the presence, but not the absence, of ACMV DNA-A. SEGS-2 episomes contain a SEGS-2 derived promoter and an open reading frame with the potential to encode a 75-amino acid protein. An ATG mutation at the beginning of the SEGS-2 coding region does not enhance ACMV infection in A. thaliana. Together, the results established that SEGS-2 is a new type of begomovirus satellite that enhances viral disease through the action of an SEGS-2-encoded protein that may also be encoded by the cassava genome. IMPORTANCE Cassava is an important root crop in the developing world and a food and income crop for more than 300 million African farmers. Cassava is rising in global importance and trade as the demands for biofuels and commercial starch increase. More than half of the world's cassava is produced in Africa, where it is primarily grown by smallholder farmers, many of whom are from the poorest villages. Although cassava can grow under high temperature, drought, and poor soil conditions, its production is severely limited by viral diseases. Cassava mosaic disease (CMD) is one of the most important viral diseases of cassava and can cause up to 100% yield losses. We provide evidence that SEGS-2, which was originally isolated from cassava crops displaying severe and atypical CMD symptoms in Tanzanian fields, is a novel begomovirus satellite that can compromise the development of durable CMD resistance.


Assuntos
Begomovirus/genética , Begomovirus/isolamento & purificação , Manihot/virologia , Doenças das Plantas/virologia , Vírus Satélites/genética , Vírus Satélites/isolamento & purificação , Begomovirus/classificação , Begomovirus/patogenicidade , DNA Viral/genética , Genoma Viral , Mutação , Filogenia , Recombinação Genética , Vírus Satélites/classificação , Vírus Satélites/patogenicidade , Nicotiana/virologia
3.
Arch Virol ; 165(9): 2099-2103, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32556597

RESUMO

Geminiviruses cause considerable yield loss in several crop plants worldwide. In 2016, several hollyhock plants displaying yellow mosaic and leaf curling symptoms were noticed in a nursery of Jawaharlal Nehru University, New Delhi, India. Analysis of the collected samples indicated an association of monopartite and bipartite begomoviruses with satellites. Three begomoviruses (including a member of a new begomovirus species), two alphasatellites, and a betasatellite were isolated from yellow-mosaic-disease-affected plants. Similarly, a begomovirus, two alphasatellites, and a betasatellite were found to be associated with leaf curl disease of hollyhock. These begomoviruses and satellites were found to be recombinants. By harboring diverse begomoviruses and satellite DNAs, hollyhock may serve as a potential source of virus inoculum.


Assuntos
Begomovirus/isolamento & purificação , Malvaceae/virologia , Doenças das Plantas/virologia , Vírus Satélites/isolamento & purificação , Begomovirus/classificação , Begomovirus/genética , Begomovirus/fisiologia , Índia , Filogenia , Vírus Satélites/classificação , Vírus Satélites/genética , Vírus Satélites/fisiologia
4.
Viruses ; 12(6)2020 06 10.
Artigo em Inglês | MEDLINE | ID: mdl-32531939

RESUMO

"Rhizomania" of sugar beet is a soilborne disease complex comprised of beet necrotic yellow vein virus (BNYVV) and its plasmodiophorid vector, Polymyxa betae. Although BNYVV is considered the causal agent of rhizomania, additional viruses frequently accompany BNYVV in diseased roots. In an effort to better understand the virus cohort present in sugar beet roots exhibiting rhizomania disease symptoms, five independent RNA samples prepared from diseased beet seedlings reared in a greenhouse or from field-grown adult sugar beet plants and enriched for virus particles were subjected to RNAseq. In all but a healthy control sample, the technique was successful at identifying BNYVV and provided sequence reads of sufficient quantity and overlap to assemble > 98% of the published genome of the virus. Utilizing the derived consensus sequence of BNYVV, infectious RNA was produced from cDNA clones of RNAs 1 and 2. The approach also enabled the detection of beet soilborne mosaic virus (BSBMV), beet soilborne virus (BSBV), beet black scorch virus (BBSV), and beet virus Q (BVQ), with near-complete genome assembly afforded to BSBMV and BBSV. In one field sample, a novel virus sequence of 3682 nt was assembled with significant sequence similarity and open reading frame (ORF) organization to members within the subgenus Alphanecrovirus (genus Necrovirus; family Tombusviridae). Construction of a DNA clone based on this sequence led to the production of the novel RNA genome in vitro that was capable of inducing local lesion formation on leaves of Chenopodium quinoa. Additionally, two previously unreported satellite viruses were revealed in the study; one possessing weak similarity to satellite maize white line mosaic virus and a second possessing moderate similarity to satellite tobacco necrosis virus C. Taken together, the approach provides an efficient pipeline to characterize variation in the BNYVV genome and to document the presence of other viruses potentially associated with disease severity or the ability to overcome resistance genes used for sugar beet rhizomania disease management.


Assuntos
Genoma Viral , Doenças das Plantas/parasitologia , Doenças das Plantas/virologia , Vírus de Plantas/genética , Plasmodioforídeos/virologia , Vírus Satélites/genética , Beta vulgaris/parasitologia , Beta vulgaris/virologia , Filogenia , Raízes de Plantas/parasitologia , Raízes de Plantas/virologia , Vírus de Plantas/classificação , Vírus de Plantas/isolamento & purificação , Vírus Satélites/classificação , Vírus Satélites/isolamento & purificação , Análise de Sequência de RNA
5.
Virol J ; 16(1): 131, 2019 11 09.
Artigo em Inglês | MEDLINE | ID: mdl-31706358

RESUMO

BACKGROUND: In Oman tobacco (Nicotiana tabacum; family Solanaceae) is a minor crop, which is produced only for local consumption. In 2015, tobacco plants exhibiting severe downward leaf curling, leaf thickening, vein swelling, yellowing and stunting were identified in fields of tobacco in Suhar Al-Batina region, Oman. These symptoms are suggestive of begomovirus (genus Begomovirus, family Geminiviridae) infection. METHODS: Circular DNA molecules were amplified from total DNA extracted from tobacco plants by rolling circle amplification (RCA). Viral genomes were cloned from RCA products by restriction digestion and betasatellites were cloned by PCR amplification from RCA product, using universal primers. The sequences of full-length clones were obtained by Sanger sequencing and primer walking. Constructs for the infectivity of virus and betasatellite were produced and introduced into plants by Agrobacterium-mediated inoculation. RESULTS: The full-length sequences of 3 begomovirus and 3 betasatellite clones, isolated from 3 plants, were obtained. Analysis of the full-length sequences determined showed the virus to be a variant of Chilli leaf curl virus (ChiLCV) and the betasatellite to be a variant of Tomato leaf curl betasatellite (ToLCB). Both the virus and the betasatellite isolated from tobacco show the greatest levels of sequence identity to isolates of ChiLCV and ToLCB identified in other hosts in Oman. Additionally clones of ChiLCV and ToLCB were shown, by Agrobacterium-mediated inoculation, to be infectious to 3 Nicotiana species, including N. tabacum. In N. benthamiana the betasatellite was shown to change the upward leaf rolling symptoms to a severe downward leaf curl, as is typical for many monopartite begomoviruses with betasatellites. CONCLUSIONS: The leaf curl disease of tobacco in Oman was shown to be caused by ChiLCV and ToLCB. This is the first identification of ChiLCV with ToLCB infecting tobacco. The study shows that, despite the low diversity of begomoviruses and betasatellites in Oman, the extant viruses/betasatellites are able to fill the niches that present themselves.


Assuntos
Begomovirus/isolamento & purificação , Capsicum/virologia , Nicotiana/virologia , Doenças das Plantas/virologia , Vírus Satélites/isolamento & purificação , Solanum lycopersicum/virologia , Begomovirus/classificação , Begomovirus/genética , Begomovirus/patogenicidade , DNA Viral/genética , Genoma Viral/genética , Omã , Filogenia , Folhas de Planta/virologia , Vírus Satélites/classificação , Vírus Satélites/genética , Vírus Satélites/patogenicidade , Análise de Sequência de DNA
6.
Arch Virol ; 164(6): 1661-1665, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30949815

RESUMO

Forty-five papaya samples showing severe leaf curl symptoms were tested by PCR with a degenerate primer set for virus species in the genus Begomovirus. Of these, 29 were positive for tomato leaf curl Bangladesh virus (ToLCBV). The complete genome sequences of ToLCBV (GenBank accession no. MH380003) and its associated tomato leaf curl betasatellite (ToLCB) (MH397223) from papaya isolate Gaz17-Pap were determined and characterized. Defective betasatellites were found in ToLCBV-positive papaya isolates Gaz19-Pap, Gaz20-Pap and Gaz21-Pap. This study confirmed that papaya is a host of ToLCBV, ToLCB, and other defective and recombinant DNA satellites in Bangladesh.


Assuntos
Begomovirus/isolamento & purificação , Carica/virologia , Doenças das Plantas/virologia , Análise de Sequência de DNA/métodos , Bangladesh , Begomovirus/genética , Begomovirus/patogenicidade , Genoma Viral , Solanum lycopersicum/virologia , Filogenia , Vírus Satélites/genética , Vírus Satélites/isolamento & purificação , Vírus Satélites/patogenicidade
7.
J Gen Virol ; 99(12): 1563-1564, 2018 12.
Artigo em Inglês | MEDLINE | ID: mdl-30507372

RESUMO

The family Sarthroviridae includes a single genus, Macronovirus, which in turn includes a single species, Macrobrachium satellite virus 1. Members of this species, named extra small virus, are satellite viruses of Macrobrachium rosenbergii nodavirus, an unclassified virus related to members of the family Nodaviridae. Both viruses have isometric, spherical virions, infect giant freshwater prawns and together cause white tail disease, which is responsible for mass mortalities and severe economic losses in hatcheries and farms. Infection is caused by both vertical and horizontal transmission of virus. Aquatic insects act as a carrier to transmit the disease in prawns. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Sarthroviridae, which is available at www.ictv.global/report/sarthroviridae.


Assuntos
Nodaviridae/crescimento & desenvolvimento , Vírus de RNA/classificação , Vírus de RNA/genética , Vírus Satélites/classificação , Vírus Satélites/genética , Animais , Transmissão de Doença Infecciosa , Transmissão Vertical de Doenças Infecciosas , Insetos Vetores/virologia , Nodaviridae/ultraestrutura , Palaemonidae/virologia , Infecções por Vírus de RNA/transmissão , Infecções por Vírus de RNA/veterinária , Infecções por Vírus de RNA/virologia , Vírus de RNA/isolamento & purificação , Vírus de RNA/ultraestrutura , Vírus Satélites/isolamento & purificação , Vírus Satélites/ultraestrutura , Vírion/ultraestrutura
8.
Viruses ; 10(10)2018 10 16.
Artigo em Inglês | MEDLINE | ID: mdl-30332789

RESUMO

The Saccharomycetaceae yeast family recently became recognized for expanding of the repertoire of different dsRNA-based viruses, highlighting the need for understanding of their cross-dependence. We isolated the Saccharomyces paradoxus AML-15-66 killer strain from spontaneous fermentation of serviceberries and identified helper and satellite viruses of the family Totiviridae, which are responsible for the killing phenotype. The corresponding full dsRNA genomes of viruses have been cloned and sequenced. Sequence analysis of SpV-LA-66 identified it to be most similar to S. paradoxus LA-28 type viruses, while SpV-M66 was mostly similar to the SpV-M21 virus. Sequence and functional analysis revealed significant differences between the K66 and the K28 toxins. The structural organization of the K66 protein resembled those of the K1/K2 type toxins. The AML-15-66 strain possesses the most expressed killing property towards the K28 toxin-producing strain. A genetic screen performed on S. cerevisiae YKO library strains revealed 125 gene products important for the functioning of the S. paradoxus K66 toxin, with 85% of the discovered modulators shared with S. cerevisiae K2 or K1 toxins. Investigation of the K66 protein binding to cells and different polysaccharides implies the ß-1,6 glucans to be the primary receptors of S. paradoxus K66 toxin. For the first time, we demonstrated the coherent habitation of different types of helper and satellite viruses in a wild-type S. paradoxus strain.


Assuntos
Micovírus/isolamento & purificação , Vírus Auxiliares/isolamento & purificação , Saccharomyces/virologia , Vírus Satélites/isolamento & purificação , Totiviridae/isolamento & purificação , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Micovírus/classificação , Micovírus/genética , Micovírus/fisiologia , Genoma Viral , Vírus Auxiliares/classificação , Vírus Auxiliares/genética , Vírus Auxiliares/fisiologia , Filogenia , Saccharomyces/genética , Saccharomyces/metabolismo , Vírus Satélites/classificação , Vírus Satélites/genética , Vírus Satélites/fisiologia , Totiviridae/classificação , Totiviridae/genética , Totiviridae/fisiologia
9.
Arch Virol ; 163(12): 3447-3449, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30159684

RESUMO

Using high-throughput sequencing, a novel waikavirus was identified in a mixed virus infection of red clover (Trifolium pratense L.). Its complete genomic sequence was determined and characterized. The virus, tentatively named red clover associated virus 1 (RCaV1), is phylogenetically related to members of the genus Waikavirus (family Secoviridae, order Picornavirales).


Assuntos
Genoma Viral , Doenças das Plantas/virologia , Vírus Satélites/genética , Vírus Satélites/isolamento & purificação , Trifolium/virologia , Waikavirus/genética , Waikavirus/isolamento & purificação , Sequência de Bases , Dados de Sequência Molecular , Fases de Leitura Aberta , Filogenia , Vírus Satélites/classificação , Análise de Sequência de DNA , Waikavirus/classificação
10.
Virus Res ; 256: 174-182, 2018 09 02.
Artigo em Inglês | MEDLINE | ID: mdl-30149045

RESUMO

Spinach is a common vegetable crop and very little data is available about its virus infection. Symptomatic leaves of spinach were collected during field survey. Circular DNA molecules were amplified from symptomatic samples using rolling circle amplification (RCA). After restriction analysis, presumed bands of virus and satellites were cloned, sequenced and analyzed. Analysis of sequenced RCA product revealed the presence of chickpea chlorotic dwarf virus (CpCDV; Mastrevirus). Further analyses of the cloned virus showed that strain "C" of CpCDV was present in symptomatic samples of spinach collected from field associated with vein darkening, curling and enations on leaves. Amplification of alpha- and betasatellites with universal primers was performed. CpCDV showed association with cotton leaf curl Multan betasatellite (CLCuMB) and cotton leaf curl Multan alphasatellites (CLCuMA). Infectivity analysis of CpCDV and CpCDV/CLCuMB were done in N. benthamiana using particle bombardment method and the results showed that CpCDV was able to transreplicates CLCuMB in this host. To our knowledge, this is the first report of a dicot infecting mastrevirus (CpCDV) along with CLCuMB and CLCuMA associated with leaf curl disease of spinach in Pakistan. The significance of the results is discussed.


Assuntos
Begomovirus/isolamento & purificação , Geminiviridae/isolamento & purificação , Doenças das Plantas/virologia , Vírus Satélites/isolamento & purificação , Spinacia oleracea/virologia , Begomovirus/genética , DNA Viral/química , DNA Viral/genética , Geminiviridae/genética , Paquistão , Vírus Satélites/genética , Análise de Sequência de DNA , Nicotiana/virologia
11.
Arch Virol ; 163(9): 2587-2600, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-29740680

RESUMO

Nanoviruses and geminiviruses are circular, single stranded DNA viruses that infect many plant species around the world. Nanoviruses and certain geminiviruses that belong to the Begomovirus and Mastrevirus genera are associated with additional circular, single stranded DNA molecules (~ 1-1.4 kb) that encode a replication-associated protein (Rep). These Rep-encoding satellite molecules are commonly referred to as alphasatellites and here we communicate the establishment of the family Alphasatellitidae to which these have been assigned. Within the Alphasatellitidae family two subfamilies, Geminialphasatellitinae and Nanoalphasatellitinae, have been established to respectively accommodate the geminivirus- and nanovirus-associated alphasatellites. Whereas the pairwise nucleotide sequence identity distribution of all the known geminialphasatellites (n = 628) displayed a troughs at ~ 70% and 88% pairwise identity, that of the known nanoalphasatellites (n = 54) had a troughs at ~ 67% and ~ 80% pairwise identity. We use these pairwise identity values as thresholds together with phylogenetic analyses to establish four genera and 43 species of geminialphasatellites and seven genera and 19 species of nanoalphasatellites. Furthermore, a divergent alphasatellite associated with coconut foliar decay disease is assigned to a species but not a subfamily as it likely represents a new alphasatellite subfamily that could be established once other closely related molecules are discovered.


Assuntos
Geminiviridae/isolamento & purificação , Nanovirus/isolamento & purificação , Vírus Satélites/isolamento & purificação , Animais , Cocos/virologia , Geminiviridae/classificação , Geminiviridae/genética , Genoma Viral , Hemípteros/virologia , Musa/virologia , Nanovirus/classificação , Nanovirus/genética , Odonatos/virologia , Filogenia , Doenças das Plantas/virologia , Vírus Satélites/classificação , Vírus Satélites/genética
12.
Arch Virol ; 163(6): 1695-1699, 2018 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-29435710

RESUMO

Emilia sonchifolia is a traditionally used medicinal plant that is widespread in tropical and subtropical regions of the world. Yellow vein symptoms were observed in E. sonchifolia plants in fields in the county of Koh Samui, Surat Thani Province, Thailand, in August 2015. Two distinct begomoviruses, designated TH4872-6 and TH4872-9, and an associated alphasatellite were obtained from an E. sonchifolia leaf sample (TH4872). Sequence analysis showed that the full-length sequence of TH4872-6 was most closely related to that of ageratum yellow vein China virus (AYVCNV), with 85.7% identity, suggesting that it is a novel begomovirus, while the TH4872-9 sequence closely resembled cotton leaf curl Multan virus (CLCuMuV) with 99.1% identity. The alphasatellite sequence showed the highest nucleotide sequence identity (92.8%) to an isolate of tobacco curly shoot alphasatellite (TbCSA) originating from China. Recombination analysis revealed that the isolate TH4872-6 is a potential recombinant begomovirus, derived from ageratum yellow vein virus (AYVV) and tobacco leaf curl Thailand virus (TbLCTHV). This study represents the first report of begomoviruses identified in E. sonchifolia in Thailand.


Assuntos
Asteraceae/virologia , Begomovirus/genética , DNA Viral/genética , Doenças das Plantas/virologia , Vírus Reordenados/genética , Vírus Satélites/genética , Begomovirus/classificação , Begomovirus/isolamento & purificação , Filogenia , Folhas de Planta/virologia , Plantas Medicinais , Vírus Reordenados/classificação , Vírus Reordenados/isolamento & purificação , Vírus Satélites/classificação , Vírus Satélites/isolamento & purificação , Análise de Sequência de DNA , Tailândia
13.
Arch Virol ; 163(2): 563-566, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-29079952

RESUMO

In August 2016, a yellow vein disease was observed on leaves of Euonymus bungeanus Maxim (Euonymus, Celastraceae) in Liaoning, China. Virions measuring 750 × 13 nm were observed in a sample from the diseased plant. A potexvirus was detected in the sample by small-RNA deep sequencing analysis and recovered by traditional cloning. The genome of this potexvirus consists of 7,279 nucleotides, excluding the poly(A) tail at the 3' end, and contains five open reading frames (ORFs). Based on the nucleotide and amino acid sequences of the coat protein gene, the virus shared the highest sequence similarity with white clover mosaic virus (WCMV, X16636) (40.1%) and clover yellow mosaic virus (ClYMV, D00485) (37.1%). Phylogenetic analysis showed that the virus clustered with potexviruses and is most closely related to strawberry mild yellow edge virus. These results indicate that this virus is a distinct member of the genus Potexvirus, for which the name euonymus yellow vein associated virus (EuYVAV) is proposed. To our knowledge, this is the first report of a potexvirus on E. bungeanus.


Assuntos
Euonymus/virologia , Flexiviridae/classificação , Flexiviridae/isolamento & purificação , Genoma Viral , Doenças das Plantas/virologia , Potexvirus/isolamento & purificação , Vírus Satélites/isolamento & purificação , Sequência de Bases , China , Flexiviridae/genética , Flexiviridae/imunologia , Dados de Sequência Molecular , Fases de Leitura Aberta , Filogenia , Potexvirus/classificação , Potexvirus/genética , Vírus Satélites/classificação , Vírus Satélites/genética
14.
Virus Res ; 244: 75-83, 2018 01 15.
Artigo em Inglês | MEDLINE | ID: mdl-29122644

RESUMO

Recent studies illustrate that fungi as virus hosts provides a unique platform for hunting viruses and exploring virus/virus and virus/host interactions. Such studies have revealed a number of as-yet-unreported viruses and virus/virus interactions. Among them is a unique intimate relationship between a (+)ssRNA virus, yado-kari virus (YkV1) and an unrelated dsRNA virus, yado-nushi virus (YnV1). YkV1 dsRNA, a replicated form of YkV1, and RNA-dependent RNA polymerase, are trans-encapsidated by the capsid protein of YnV1. While YnV1 can complete its replication cycle, YkV1 relies on YnV1 for its viability. We previously proposed a model in which YkV1 diverts YnV1 capsids as the replication sites. YkV1 is neither satellite virus nor satellite RNA, because YkV1 appears to encode functional RdRp and enhances YnV1 accumulation. This represents a unique mutualistic virus/virus interplay and similar relations in other virus/host fungus systems are detectable. We propose to establish the family Yadokariviridae that accommodates YkV1 and recently discovered viruses phylogenetically related to YkV1. This article overviews what is known and unknown about the YkV1/YnV1 interactions. Also discussed are the YnV1 Phytoreo_S7 and YkV1 2A-like domains that may have been captured via horizontal transfer during the course of evolution and are conserved across extant diverse RNA viruses. Lastly, evolutionary scenarios are envisioned for YkV1 and YnV1.


Assuntos
Micovírus/genética , Fungos/virologia , Filogenia , Vírus de RNA/genética , RNA Viral/genética , Vírus Satélites/genética , Sequência de Aminoácidos , Proteínas do Capsídeo/genética , Proteínas do Capsídeo/metabolismo , Evolução Molecular , Micovírus/classificação , Micovírus/isolamento & purificação , Micovírus/metabolismo , Transferência Genética Horizontal , Interações Microbianas , Vírus de RNA/classificação , Vírus de RNA/isolamento & purificação , Vírus de RNA/metabolismo , RNA de Cadeia Dupla/genética , RNA de Cadeia Dupla/metabolismo , RNA Viral/metabolismo , RNA Polimerase Dependente de RNA/genética , RNA Polimerase Dependente de RNA/metabolismo , Vírus Satélites/classificação , Vírus Satélites/isolamento & purificação , Vírus Satélites/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Replicação Viral
15.
J Virol Methods ; 249: 130-136, 2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-28888402

RESUMO

The emergence of nanotechnology has opened new horizons for constructing efficient recognition interfaces. This is the first report where the potential of a multiwalled carbon nanotube based zinc nanocomposite (MWCNTs-Zn NPs) investigated for the detection of an agricultural pathogen i.e. Chili leaf curl betasatellite (ChLCB). Atomic force microscope analyses revealed the presence of multiwalled carbon nanotubes (MWCNTs) having a diameter of 50-100nm with zinc nanoparticles (Zn-NPs) of 25-500nm. In this system, these bunches of Zn-NPs anchored along the whole lengths of MWCNTs were used for the immobilization of probe DNA strands. The electrochemical performance of DNA biosensor was assessed in the absence and presence of the complementary DNA during cyclic and differential pulse voltammetry scans. Target binding events occurring on the interface surface patterned with single-stranded DNA was quantitatively translated into electrochemical signals due to hybridization process. In the presence of complementary target DNA, as the result of duplex formation, there was a decrease in the peak current from 1.89×10-04 to 5.84×10-05A. The specificity of this electrochemical DNA biosensor was found to be three times as compared to non-complementary DNA. This material structuring technique can be extended to design interfaces for the recognition of the other plant viruses and biomolecules.


Assuntos
Begomovirus/isolamento & purificação , Nanocompostos , Nanotecnologia/métodos , Vírus Satélites/isolamento & purificação , Zinco/química , Begomovirus/patogenicidade , Técnicas Biossensoriais , DNA/análise , Técnicas Eletroquímicas , Nanocompostos/química , Nanopartículas , Hibridização de Ácido Nucleico , Doenças das Plantas/virologia , Vírus Satélites/patogenicidade
16.
J Virol Methods ; 248: 54-60, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28572041

RESUMO

Cotton leaf curl disease (CLCuD) is the major biotic constraint to cotton production in Pakistan and northwestern India. The disease is caused by monopartite begomoviruses in association with a specific DNA satellite, Cotton leaf curl Multan betasatellite. The virus-betasatellite complex is also frequently associated with another DNA satellite-like molecule; an alphasatellite. A quantitative real-time PCR (qPCR) assay to detect all three components of the monopartite begomovirus/betasatellite/alphasatellite complex which causes CLCuD was established. This was used to investigate the relationship between symptoms and virus/satellite titre. Not surprisingly the analysis showed that, overall, there was a reasonable correlation between symptom severity and virus/satellite titre - more severe symptoms usually being associated with more virus/satellite. However, cotton plants were identified with no or very mild symptoms with relatively high virus/satellite titres and plants with severe symptoms but relatively low virus/satellite titres. This may be attributed to the resistance/susceptibility of the cotton variety - tolerant plants being able to sustain a relatively high virus/satellite titre whilst exhibiting mild symptoms. The usefulness of this qPCR procedure in the screening for resistance in cotton against CLCuD is discussed.


Assuntos
Begomovirus/isolamento & purificação , Doenças das Plantas/virologia , Folhas de Planta/virologia , Reação em Cadeia da Polimerase em Tempo Real/métodos , Vírus Satélites/isolamento & purificação , Begomovirus/genética , Vírus de DNA/genética , DNA Satélite , DNA Viral/análise , DNA Viral/genética , Índia , Paquistão , Filogenia , Vírus Satélites/genética , Análise de Sequência de DNA , Proteínas Virais/genética
17.
Arch Virol ; 162(4): 1079-1082, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-27900540

RESUMO

The complete genomes of a monopartite begomovirus (genus Begomovirus, family Geminiviridae) and an associated betasatellite found infecting Vernonia amygdalina Delile (family Compositae) in Uganda were cloned and sequenced. Begomoviruses isolated from two samples showed the highest nucleotide sequence identity (73.1% and 73.2%) to an isolate of the monopartite begomovirus tomato leaf curl Vietnam virus, and betasatellites from the same samples exhibited the highest nucleotide sequence identity (67.1% and 68.2%) to vernonia yellow vein Fujian betasatellite. Following the current taxonomic criteria for begomovirus species demarcation, the isolates sequenced here represent a novel begomovirus species. Based on symptoms observed in the field, we propose the name vernonia crinkle virus (VeCrV) for this novel begomovirus and vernonia crinkle betasatellite (VeCrB) for the associated betasatellite. This is the first report of a monopartite begomovirus-betasatellite complex from Uganda.


Assuntos
Begomovirus/isolamento & purificação , Doenças das Plantas/virologia , Vírus Satélites/isolamento & purificação , Vernonia/virologia , Begomovirus/classificação , Begomovirus/genética , DNA Viral/genética , Genoma Viral , Filogenia , Vírus Satélites/classificação , Vírus Satélites/genética
18.
Nat Microbiol ; 1: 15001, 2016 Jan 11.
Artigo em Inglês | MEDLINE | ID: mdl-27571749

RESUMO

Viruses typically encode the capsid that encases their genome, while satellite viruses do not encode a replicase and depend on a helper virus for their replication(1). Here, we report interplay between two RNA viruses, yado-nushi virus 1 (YnV1) and yado-kari virus 1 (YkV1), in a phytopathogenic fungus, Rosellinia necatrix(2). YkV1 has a close phylogenetic affinity to positive-sense, single-stranded (+)ssRNA viruses such as animal caliciviruses(3), while YnV1 has an undivided double-stranded (ds) RNA genome with a resemblance to fungal totiviruses(4). Virion transfection and infectious full-length cDNA transformation has shown that YkV1 depends on YnV1 for viability, although it probably encodes functional RNA-dependent RNA polymerase (RdRp). Immunological and molecular analyses have revealed trans-encapsidation of not only YkV1 RNA but also RdRp by the capsid protein of the other virus (YnV1), and enhancement of YnV1 accumulation by YkV1. This study demonstrates interplay in which the capsidless (+)ssRNA virus (YkV1), hijacks the capsid protein of the dsRNA virus (YnV1), and replicates as if it were a dsRNA virus.


Assuntos
Micovírus/isolamento & purificação , Vírus de RNA/isolamento & purificação , Vírus Satélites/isolamento & purificação , Xylariales/virologia , Capsídeo/ultraestrutura , Proteínas do Capsídeo/metabolismo , Micovírus/crescimento & desenvolvimento , Micovírus/ultraestrutura , Vírus de RNA/crescimento & desenvolvimento , Vírus de RNA/ultraestrutura , Vírus Satélites/crescimento & desenvolvimento , Vírus Satélites/ultraestrutura , Montagem de Vírus
19.
Arch Virol ; 161(1): 233-47, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-26446887

RESUMO

Satellite viruses encode structural proteins required for the formation of infectious particles but depend on helper viruses for completing their replication cycles. Because of this unique property, satellite viruses that infect plants, arthropods, or mammals, as well as the more recently discovered satellite-like viruses that infect protists (virophages), have been grouped with other, so-called "sub-viral agents." For the most part, satellite viruses are therefore not classified. We argue that possession of a coat-protein-encoding gene and the ability to form virions are the defining features of a bona fide virus. Accordingly, all satellite viruses and virophages should be consistently classified within appropriate taxa. We propose to create four new genera - Albetovirus, Aumaivirus, Papanivirus, and Virtovirus - for positive-sense single-stranded (+) RNA satellite viruses that infect plants and the family Sarthroviridae, including the genus Macronovirus, for (+)RNA satellite viruses that infect arthopods. For double-stranded DNA virophages, we propose to establish the family Lavidaviridae, including two genera, Sputnikvirus and Mavirus.


Assuntos
Doenças dos Animais/virologia , Classificação/métodos , Doenças das Plantas/virologia , Vírus Satélites/classificação , Animais , Sequência de Bases , Genoma Viral , Dados de Sequência Molecular , Filogenia , RNA Satélite/genética , Vírus Satélites/genética , Vírus Satélites/isolamento & purificação
20.
Virology ; 486: 291-306, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26519598

RESUMO

Recombinant viruses are increasingly being reported but the dynamics of their emergence is rarely documented. A new recombinant Tomato yellow leaf curl virus (TYLCV-IS76) was detected for the first time in 2010 in Southern Morocco (Souss). An original diagnostic tool was needed to fit its unusual recombination profile. Although IS76 was detected following the appearance of Tylc symptoms on tolerant tomato plants, symptoms could not be associated to IS76 or to a synergy with criniviruses. According to infection profiles of Tylc-associated viruses determined on 879 plant samples collected between 1998 and 2014 and a Bayesian inference applied to genomic sequences of representatives of TYLCV, IS76 emerged in Southern Morocco at the end of the 1990s, replaced the parental viruses between 2004 and 2012 in Souss and is spreading towards the North of Morocco. The emergence of IS76 coincides with the increasing use of tolerant cultivars in the 2000s.


Assuntos
Begomovirus/genética , Doenças das Plantas/virologia , Recombinação Genética , Vírus Satélites/genética , Solanum lycopersicum/virologia , Sequência de Bases , Teorema de Bayes , Begomovirus/classificação , Begomovirus/isolamento & purificação , Dados de Sequência Molecular , Filogenia , Folhas de Planta/virologia , Vírus Satélites/classificação , Vírus Satélites/isolamento & purificação , Proteínas Virais/genética
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