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1.
J Math Biol ; 89(2): 15, 2024 Jun 17.
Artigo em Inglês | MEDLINE | ID: mdl-38884837

RESUMO

Mycoloop is an important aquatic food web composed of phytoplankton, chytrids (one dominant group of parasites in aquatic ecosystems), and zooplankton. Chytrids infect phytoplankton and fragment them for easy consumption by zooplankton. The free-living chytrid zoospores are also a food resource for zooplankton. A dynamic reaction-diffusion-advection mycoloop model is proposed to describe the Phytoplankton-chytrid-zooplankton interactions in a poorly mixed aquatic environment. We analyze the dynamics of the mycoloop model to obtain dissipativity, steady state solutions, and persistence. We rigorously derive several critical thresholds for phytoplankton or zooplankton invasion and chytrid transmission among phytoplankton. Numerical diagrams show that varying ecological factors affect the formation and breakup of the mycoloop, and zooplankton can inhibit chytrid transmission among phytoplankton. Furthermore, this study suggests that mycoloop may either control or cause phytoplankton blooms.


Assuntos
Cadeia Alimentar , Conceitos Matemáticos , Modelos Biológicos , Fitoplâncton , Zooplâncton , Fitoplâncton/fisiologia , Fitoplâncton/microbiologia , Fitoplâncton/crescimento & desenvolvimento , Zooplâncton/fisiologia , Zooplâncton/microbiologia , Animais , Quitridiomicetos/fisiologia , Quitridiomicetos/patogenicidade , Ecossistema , Dinâmica Populacional/estatística & dados numéricos , Simulação por Computador
2.
Appl Environ Microbiol ; 88(9): e0252221, 2022 05 10.
Artigo em Inglês | MEDLINE | ID: mdl-35416683

RESUMO

This study shows that Escherichia coli can be temporarily enriched in zooplankton under natural conditions and that these bacteria can belong to different phylogroups and sequence types (STs), including environmental, clinical, and animal isolates. We isolated 10 E. coli strains and sequenced the genomes of two of them. Phylogenetically, the two isolates were closer to strains isolated from poultry meat than to freshwater E. coli, albeit their genomes were smaller than those of the poultry isolates. After isolation and fluorescent protein tagging of strains ED1 and ED157, we show that Daphnia sp. can take up these strains and release them alive again, thus becoming a temporary host for E. coli. In a chemostat experiment, we show that this association does not prolong bacterial long-term survival, but at low abundances it also does not significantly reduce bacterial numbers. We demonstrate that E. coli does not belong to the core microbiota of Daphnia, suffers from competition by the natural Daphnia microbiota, but can profit from its carapax to survive in water. All in all, this study suggests that the association of E. coli with Daphnia is only temporary, but the cells are viable therein, and this might allow encounters with other bacteria for genetic exchange and potential genomic adaptation to the freshwater environment. IMPORTANCE The contamination of freshwater with feces-derived bacteria is a major concern regarding drinking water acquisition and recreational activities. Ecological interactions promoting their persistence are still very scarcely studied. This study, which analyses the survival of E. coli in the presence of zooplankton, is thus of ecological and water safety relevance.


Assuntos
Água Potável , Escherichia coli , Animais , Bactérias , Daphnia/microbiologia , Escherichia coli/genética , Fezes/microbiologia , Água Doce/microbiologia , Zooplâncton/microbiologia
3.
Sci Rep ; 11(1): 19007, 2021 09 24.
Artigo em Inglês | MEDLINE | ID: mdl-34561474

RESUMO

Holobionts are defined as a host and its microbiota, however, only a fraction of the bacteria are inherited vertically and thus coevolve with the host. The "it's the song, not the singer" theory proposes that functional traits, instead of taxonomical microbiota composition, could be preserved across generations if interspecies interaction patterns perpetuate themselves. We tested conservation of functional composition across generations using zooplankton, mosquito, and plant datasets. Then, we tested if there is a change of functional microbiota composition over time within a generation in human datasets. Finally, we simulated microbiota communities to investigate if (pairwise) interactions can lead to multiple stable community compositions. Our results suggest that the vertically transmitted microbiota starts a predictable change of functions performed by the microbiota over time, whose robustness depends on the arrival of diverse migrants. This succession culminates in a stable functional composition state. The results suggest that the host-microbiota interaction and higher order interactions in general have an important contribution to the robustness of the final community. If the proposed mechanism proves to be valid for a diverse array of host species, this would support the concept of holobionts being used as units of selection, including animal breeding, suggesting this has a wider applicability.


Assuntos
Interações entre Hospedeiro e Microrganismos , Microbiota/fisiologia , Animais , Culicidae/microbiologia , Conjuntos de Dados como Assunto , Especificidade de Hospedeiro , Humanos , Plantas/microbiologia , Zooplâncton/microbiologia
4.
Parasitology ; 148(11): 1303-1312, 2021 09.
Artigo em Inglês | MEDLINE | ID: mdl-34103104

RESUMO

Genetic variation in parasites has important consequences for host­parasite interactions. Prior studies of the ecologically important parasite Metschnikowia bicuspidata have suggested low genetic variation in the species. Here, we collected M. bicuspidata from two host species (Daphnia dentifera and Ceriodaphnia dubia) and two regions (Michigan and Indiana, USA). Within a lake, outbreaks tended to occur in one host species but not the other. Using microsatellite markers, we identified six parasite genotypes grouped within three distinct clades, one of which was rare. Of the two main clades, one was generally associated with D. dentifera, with lakes in both regions containing a single genotype. The other M. bicuspidata clade was mainly associated with C. dubia, with a different genotype dominating in each region. Despite these associations, both D. dentifera- and C. dubia-associated genotypes were found infecting both hosts in lakes. However, in lab experiments, the D. dentifera-associated genotype infected both D. dentifera and C. dubia, but the C. dubia-associated genotype, which had spores that were approximately 30% smaller, did not infect D. dentifera. We hypothesize that variation in spore size might help explain patterns of cross-species transmission. Future studies exploring the causes and consequences of variation in spore size may help explain patterns of infection and the maintenance of genotypic diversity in this ecologically important system.


Assuntos
Variação Genética , Metschnikowia/genética , Análise de Variância , Animais , Daphnia/microbiologia , Genótipo , Interações Hospedeiro-Parasita , Lagos , Metschnikowia/classificação , Michigan , Esporos Fúngicos/ultraestrutura , Zooplâncton/microbiologia
5.
Appl Environ Microbiol ; 87(9)2021 04 13.
Artigo em Inglês | MEDLINE | ID: mdl-33608287

RESUMO

Linezolid is a last-resort antibiotic for the treatment of severe infections caused by multidrug-resistant Gram-positive organisms; although linezolid resistance remains uncommon, the number of linezolid-resistant enterococci has increased in recent years due to worldwide spread of acquired resistance genes (cfr, optrA, and poxtA) in clinical, animal, and environmental settings. In this study, we investigated the occurrence of linezolid-resistant enterococci in marine samples from two coastal areas in Italy. Isolates grown on florfenicol-supplemented Slanetz-Bartley agar plates were investigated for their carriage of optrA, poxtA, and cfr genes; optrA was found in one Enterococcus faecalis isolate, poxtA was found in three Enterococcus faecium isolates and two Enterococcus hirae isolates, and cfr was not found. Two of the three poxtA-carrying E. faecium isolates and the two E. hirae isolates showed related pulsed-field gel electrophoresis (PFGE) profiles. Two E. faecium isolates belonged to the new sequence type 1710, which clustered in clonal complex 94, encompassing nosocomial strains. S1 PFGE/hybridization assays showed a double (chromosome and plasmid) location of poxtA and a plasmid location of optrA Whole-genome sequencing revealed that poxtA was contained in a Tn6657-like element carried by two plasmids (pEfm-EF3 and pEh-GE2) of similar size, found in different species, and that poxtA was flanked by two copies of IS1216 in both plasmids. In mating experiments, all but one strain (E. faecalis EN3) were able to transfer the poxtA gene to E. faecium 64/3. The occurrence of linezolid resistance genes in enterococci from marine samples is of great concern and highlights the need to improve practices aimed at limiting the transmission of linezolid-resistant strains to humans from environmental reservoirs.IMPORTANCE Linezolid is one of the few antimicrobials available to treat severe infections due to drug-resistant Gram-positive bacteria; therefore, the emergence of linezolid-resistant enterococci carrying transferable resistance determinants is of great concern for public health. Linezolid resistance genes (cfr, optrA, and poxtA), often plasmid located, can be transmitted via horizontal gene transfer and have the potential to spread globally. This study highlights the detection of enterococci carrying linezolid resistance genes from sediment and zooplankton samples from two coastal urban areas in Italy. The presence of clinically relevant resistant bacteria, such as linezolid-resistant enterococci, in marine environments could reflect their spillover from human and/or animal reservoirs and could indicate that coastal seawaters also might represent a source of these resistance genes.


Assuntos
Antibacterianos/farmacologia , Farmacorresistência Bacteriana/genética , Enterococcus/isolamento & purificação , Sedimentos Geológicos/microbiologia , Linezolida/farmacologia , Zooplâncton/microbiologia , Animais , Enterococcus/efeitos dos fármacos , Enterococcus/genética , Monitoramento Ambiental , Genes Bacterianos , Itália
6.
Sci Rep ; 10(1): 19871, 2020 11 16.
Artigo em Inglês | MEDLINE | ID: mdl-33199773

RESUMO

Astatic soda pans of the Pannonian Steppe are unique environments with respect to their multiple extreme physical and chemical characteristics (high daily water temperature fluctuation, high turbidity, alkaline pH, salinity, polyhumic organic carbon concentration, hypertrophic state and special ionic composition). However, little is known about the seasonal dynamics of the bacterial communities inhabiting these lakes and the role of environmental factors that have the main impact on their structure. Therefore, two soda pans were sampled monthly between April 2013 and July 2014 to reveal changes in the planktonic community. By late spring in both years, a sudden shift in the community structure was observed, the previous algae-associated bacterial communities had collapsed, resulting the highest ratio of Actinobacteria within the bacterioplankton (89%, with the dominance of acIII-A1 lineage) ever reported in the literature. Before these peaks, an extremely high abundance (> 10,000 individuum l-1) of microcrustaceans (Moina brachiata and Arctodiaptomus spinosus) was observed. OTU-based statistical approaches showed that in addition to algal blooms and water-level fluctuations, zooplankton densities had the strongest effect on the composition of bacterial communities. In these extreme environments, this implies a surprisingly strong, community-shaping top-down role of microcrustacean grazers.


Assuntos
Actinobacteria/classificação , Cladocera/microbiologia , Copépodes/microbiologia , Lagos/microbiologia , Fitoplâncton/microbiologia , Zooplâncton/microbiologia , Actinobacteria/genética , Actinobacteria/crescimento & desenvolvimento , Animais , DNA Bacteriano/genética , Ambientes Extremos , Pradaria , Herbivoria , Filogenia , Fitoplâncton/classificação , Salinidade , Estações do Ano , Análise de Sequência de DNA , Zooplâncton/classificação
7.
Mar Drugs ; 18(2)2020 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-31979234

RESUMO

Organisms have different adaptations to avoid damage from ultraviolet radiation and one such adaptation is the accumulation of mycosporine-like amino acids (MAAs). These compounds are common in aquatic taxa but a comprehensive review is lacking on their distribution and function in zooplankton. This paper shows that zooplankton MAA concentrations range from non-detectable to ~13 µg mgDW-1. Copepods, rotifers, and krill display a large range of concentrations, whereas cladocerans generally do not contain MAAs. The proposed mechanisms to gain MAAs are via ingestion of MAA-rich food or via symbiotic bacteria providing zooplankton with MAAs. Exposure to UV-radiation increases the concentrations in zooplankton both via increasing MAA concentrations in the phytoplankton food and due to active accumulation. Concentrations are generally low during winter and higher in summer and females seem to deposit MAAs in their eggs. The concentrations of MAAs in zooplankton tend to increase with altitude but only up to a certain altitude suggesting some limitation for the uptake. Shallow and UV-transparent systems tend to have copepods with higher concentrations of MAAs but this has only been shown in a few species. A high MAA concentration has also been shown to lead to lower UV-induced mortality and an overall increased fitness. While there is a lot of information on MAAs in zooplankton we still lack understanding of the potential costs and constraints for accumulation. There is also scarce information in some taxa such as rotifers as well as from systems in tropical, sub(polar) areas as well as in marine systems in general.


Assuntos
Adaptação Fisiológica , Aminoácidos/metabolismo , Microbiota/fisiologia , Zooplâncton/metabolismo , Animais , Copépodes/metabolismo , Copépodes/microbiologia , Rotíferos/metabolismo , Rotíferos/microbiologia , Especificidade da Espécie , Simbiose/fisiologia , Raios Ultravioleta/efeitos adversos , Zooplâncton/microbiologia , Zooplâncton/efeitos da radiação
8.
Theor Popul Biol ; 130: 132-142, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31319041

RESUMO

Indirect effects, both density- and trait-mediated, have been known to act in tandem with direct effects in the interactions of numerous species. They have been shown to affect populations embedded in competitive and mutualistic networks alike. In this work, we introduce a four-dimensional system of ordinary differential equations and investigate the interplay between direct density-effects and density- and trait-mediated indirect effects that take place in a yeast parasite-zooplankton host-incompetent competitor system embedded in a food web which also includes resources and predators. Among our main findings is the demonstration that indirect effects cause qualitative and quantitative changes almost indistinguishable from direct effects and the corroboration through our analysis of the fact that the effects of direct and indirect mechanisms cannot be disentangled. Our results underpin the conclusions of past studies calling for comprehensive models that incorporate both direct and indirect effects to better describe field data.


Assuntos
Ascomicetos/fisiologia , Daphnia/microbiologia , Interações Hospedeiro-Patógeno/fisiologia , Plâncton/microbiologia , Animais , Bivalves/microbiologia , Cadeia Alimentar , Densidade Demográfica , Zooplâncton/microbiologia
9.
PLoS Pathog ; 15(5): e1007801, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-31150530

RESUMO

Members of the major candidate phylum Dependentiae (a.k.a. TM6) are widespread across diverse environments from showerheads to peat bogs; yet, with the exception of two isolates infecting amoebae, they are only known from metagenomic data. The limited knowledge of their biology indicates that they have a long evolutionary history of parasitism. Here, we present Chromulinavorax destructans (Strain SeV1) the first isolate of this phylum to infect a representative from a widespread and ecologically significant group of heterotrophic flagellates, the microzooplankter Spumella elongata (Strain CCAP 955/1). Chromulinavorax destructans has a reduced 1.2 Mb genome that is so specialized for infection that it shows no evidence of complete metabolic pathways, but encodes an extensive transporter system for importing nutrients and energy in the form of ATP from the host. Its replication causes extensive reorganization and expansion of the mitochondrion, effectively surrounding the pathogen, consistent with its dependency on the host for energy. Nearly half (44%) of the inferred proteins contain signal sequences for secretion, including many without recognizable similarity to proteins of known function, as well as 98 copies of proteins with an ankyrin-repeat domain; ankyrin-repeats are known effectors of host modulation, suggesting the presence of an extensive host-manipulation apparatus. These observations help to cement members of this phylum as widespread and diverse parasites infecting a broad range of eukaryotic microbes.


Assuntos
Bactérias/classificação , Bactérias/patogenicidade , Chrysophyta/microbiologia , Genoma Bacteriano , Interações entre Hospedeiro e Microrganismos , Zooplâncton/microbiologia , Animais , Bactérias/genética , Filogenia
10.
Environ Monit Assess ; 191(7): 420, 2019 Jun 08.
Artigo em Inglês | MEDLINE | ID: mdl-31177343

RESUMO

In a study carried out during 2014, bacteria associated with zooplankton in the Zuari estuary were three to four orders of magnitude higher in abundance than in seawater. The live zooplankton carried much more bacterial load compared with the carcasses, and the fecal pellets harbored the highest density of bacteria, i.e., 8 × 1013 CFU cm-3. The diversity of bacteria was higher in live zooplankton and also in seawater. But the activity of the zooplankton-associated bacteria was much higher compared with the free-living ones. Most of the associated bacteria belonged to the genus Enterobacter, Pseudomonas, Aeromonas, and Bacillus. In growth experiments, Aeromonas and Bacillus were found to have lower salinity optima than Enterobacter (20 psu) and Vibrio and Pseudomonas (normal seawater salinity). Better growth of bacteria was observed in the medium containing the diatom Chaetoceros sp. than Navicula sp. Bacterial isolates were also able to survive in oligotrophic conditions and produce optimum biomass in 2 days at salinity 5 psu, but in freshwater, the bacteria took a week's time to attain the optima. At salinities 0-35, the bacteria survived even for 3 months without nutrient addition, indicating resilience in these bacteria and mechanisms to persist in the estuaries even in adverse conditions.


Assuntos
Bactérias/isolamento & purificação , Monitoramento Ambiental/métodos , Estuários , Água do Mar/microbiologia , Zooplâncton/microbiologia , Animais , Biomassa , Diatomáceas/microbiologia , Fezes/microbiologia , Água Doce/microbiologia , Índia , Salinidade , Estações do Ano
11.
Ecotoxicol Environ Saf ; 180: 749-755, 2019 Sep 30.
Artigo em Inglês | MEDLINE | ID: mdl-31154199

RESUMO

The present study emphasizes on the antimicrobial susceptibility of different bacterial strains isolated from the external body surface of a commonly found zooplanktonic copepod (Heliodiaptomus viduus, Gurney, 1916) inhabiting both in fresh and brackish water bodies of Midnapore (West and East) Districts, West Bengal, India. Out of 62 bacterial isolated strains, 38 isolates were identified as Gram-positive while the remaining 24 isolates were found to be Gram-negative. Antimicrobial properties of all those bacterial strains were determined by Vitek 2 compact system using minimum inhibitory concentration (MIC) values. All isolated bacterial strains had exhibited differential susceptibilities against some selected antibiotics. Field Emission Scanning Electron Microscope (FE-SEM) analysis revealed the considerable association of bacteria on the cuticular body parts of the studied zooplankton. The outcomes of the present research are expected to enable health professionals in identifying two major problems -1) bacterial association with zooplankton which is so far mostly considered as a novel source of food for fish in aquatic ecosystems. 2) Selection of antibiotics as treatment measure because of the pathogenic effects of zooplankton associated bacteria on human being. This unattended arena of research is also supposed to evoke a new dimension not only because of bacteria-zooplankton interactions but also on undertaking of judicious strategies to find out proper ways and means to make the surface water suitable for the utilization by the common peoples (minimising bacterial contamination) in the context of human health and environmental safety.


Assuntos
Antibacterianos/farmacologia , Bactérias/efeitos dos fármacos , Copépodes/microbiologia , Microbiologia da Água , Zooplâncton/microbiologia , Animais , Bactérias/classificação , Interações entre Hospedeiro e Microrganismos , Humanos , Índia , Testes de Sensibilidade Microbiana
12.
BMC Ecol ; 19(1): 14, 2019 03 14.
Artigo em Inglês | MEDLINE | ID: mdl-30871516

RESUMO

BACKGROUND: Understanding the impact of disease in natural populations requires an understanding of infection risk and the damage that parasites cause to their hosts (= virulence). However, because these disease traits are often studied and quantified under controlled laboratory conditions and with reference to healthy control hosts, we have little knowledge about how they play out in natural conditions. In the Daphnia-Pasteuria host-parasite system, field assessments often show very low estimates of virulence, while controlled laboratory experiments indicate extremely high virulence. RESULTS: To examine this discrepancy, we sampled Daphnia magna hosts from the field during a parasite epidemic and recorded disease traits over a subsequent 3-week period in the laboratory. As predicted for chronic disease where infections in older (larger) hosts are also, on average, older, we found that larger D. magna females were infected more often, had fewer offspring prior to the onset of castration and showed signs of infection sooner than smaller hosts. Also consistent with laboratory experiments, infected animals were found in both sexes and in all sizes of hosts. Infected females were castrated at capture or became castrated soon after. As most females in the field carried no eggs in their brood pouch at the time of sampling, virulence estimates of infected females relative to uninfected females were low. However, with improved feeding conditions in the laboratory, only uninfected females resumed reproduction, resulting in very high relative virulence estimates. CONCLUSIONS: Overall, our study shows that the disease manifestation of P. ramosa, as expressed under natural conditions, is consistent with what we know from laboratory experiments. However, parasite induced fecundity reduction of infected, relative to uninfected hosts depended strongly on the environmental conditions. We argue that this effect is particularly strong for castrating parasites, because infected hosts have low fecundity under all conditions.


Assuntos
Evolução Biológica , Daphnia/microbiologia , Interações Hospedeiro-Patógeno , Pasteuria/fisiologia , Animais , Lagos , Suíça , Zooplâncton/microbiologia
13.
Mar Drugs ; 17(2)2019 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-30717239

RESUMO

Despite accumulating evidence of the importance of the jellyfish-associated microbiome to jellyfish, its potential relevance to blue biotechnology has only recently been recognized. In this review, we emphasize the biotechnological potential of host⁻microorganism systems and focus on gelatinous zooplankton as a host for the microbiome with biotechnological potential. The basic characteristics of jellyfish-associated microbial communities, the mechanisms underlying the jellyfish-microbe relationship, and the role/function of the jellyfish-associated microbiome and its biotechnological potential are reviewed. It appears that the jellyfish-associated microbiome is discrete from the microbial community in the ambient seawater, exhibiting a certain degree of specialization with some preferences for specific jellyfish taxa and for specific jellyfish populations, life stages, and body parts. In addition, different sampling approaches and methodologies to study the phylogenetic diversity of the jellyfish-associated microbiome are described and discussed. Finally, some general conclusions are drawn from the existing literature and future research directions are highlighted on the jellyfish-associated microbiome.


Assuntos
Ctenóforos/microbiologia , Microbiota , Animais , Biotecnologia/métodos , Ecossistema , Biologia Marinha , Água do Mar/microbiologia , Zooplâncton/microbiologia
14.
Environ Microbiol ; 21(1): 34-49, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30246449

RESUMO

Non-predatory mortality of zooplankton provides an abundant, yet, little studied source of high quality labile organic matter (LOM) in aquatic ecosystems. Using laboratory microcosms, we followed the decomposition of organic carbon of fresh 13 C-labelled Daphnia carcasses by natural bacterioplankton. The experimental setup comprised blank microcosms, that is, artificial lake water without any organic matter additions (B), and microcosms either amended with natural humic matter (H), fresh Daphnia carcasses (D) or both, that is, humic matter and Daphnia carcasses (HD). Most of the carcass carbon was consumed and respired by the bacterial community within 15 days of incubation. A shift in the bacterial community composition shaped by labile carcass carbon and by humic matter was observed. Nevertheless, we did not observe a quantitative change in humic matter degradation by heterotrophic bacteria in the presence of LOM derived from carcasses. However, carcasses were the main factor driving the bacterial community composition suggesting that the presence of large quantities of dead zooplankton might affect the carbon cycling in aquatic ecosystems. Our results imply that organic matter derived from zooplankton carcasses is efficiently remineralized by a highly specific bacterial community, but does not interfere with the bacterial turnover of more refractory humic matter.


Assuntos
Bactérias/metabolismo , Ciclo do Carbono , Daphnia/química , Água Doce/microbiologia , Zooplâncton/química , Animais , Bactérias/classificação , Bactérias/crescimento & desenvolvimento , Bactérias/isolamento & purificação , Carbono/metabolismo , Daphnia/metabolismo , Daphnia/microbiologia , Ecossistema , Processos Heterotróficos , Zooplâncton/metabolismo , Zooplâncton/microbiologia
15.
Sci Rep ; 8(1): 3440, 2018 02 21.
Artigo em Inglês | MEDLINE | ID: mdl-29467371

RESUMO

Cephalopods are primarily active predators throughout life. Flying squids (family Ommastrephidae) represents the most widely distributed and ecologically important family of cephalopods. While the diets of adult flying squids have been extensively studied, the first feeding diet of early paralarvae remains a mystery. The morphology of this ontogenetic stage notably differs from other cephalopod paralarvae, suggesting a different feeding strategy. Here, a combination of Laser Capture Microdissection (LCM) and DNA metabarcoding of wild-collected paralarvae gut contents for eukaryotic 18S v9 and prokaryotic 16S rRNA was applied, covering almost every life domain. The gut contents were mainly composed by fungus, plants, algae and animals of marine and terrestrial origin, as well as eukaryotic and prokaryotic microorganisms commonly found in fecal pellets and particulate organic matter. This assemblage of gut contents is consistent with a diet based on detritus. The ontogenetic shift of diet from detritivore suspension feeding to active predation represents a unique life strategy among cephalopods and allows ommastrephid squids to take advantage of an almost ubiquitous and accessible food resource during their early stages. LCM was successfully applied for the first time to tiny, wild-collected marine organisms, proving its utility in combination with DNA metabarcoding for dietary studies.


Assuntos
Decapodiformes/fisiologia , Comportamento Predatório , Zooplâncton/fisiologia , Animais , Código de Barras de DNA Taxonômico , Decapodiformes/microbiologia , Decapodiformes/ultraestrutura , Dieta , Comportamento Alimentar , Cadeia Alimentar , Zooplâncton/microbiologia , Zooplâncton/ultraestrutura
16.
Environ Microbiol ; 20(2): 492-505, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-28967193

RESUMO

Zooplankton and microbes play a key role in the ocean's biological cycles by releasing and consuming copious amounts of particulate and dissolved organic matter. Additionally, zooplankton provide a complex microhabitat rich in organic and inorganic nutrients in which bacteria thrive. In this study, we assessed the phylogenetic composition and metabolic potential of microbial communities associated with crustacean zooplankton species collected in the North Atlantic. Using Illumina sequencing of the 16S rRNA gene, we found significant differences between the microbial communities associated with zooplankton and those inhabiting the surrounding seawater. Metagenomic analysis of the zooplankton-associated microbial community revealed a highly specialized bacterial community able to exploit zooplankton as microhabitat and thus, mediating biogeochemical processes generally underrepresented in the open ocean. The zooplankton-associated bacterial community is able to colonize the zooplankton's internal and external surfaces using a large set of adhesion mechanisms and to metabolize complex organic compounds released or exuded by the zooplankton such as chitin, taurine and other complex molecules. Moreover, the high number of genes involved in iron and phosphorus metabolisms in the zooplankton-associated microbiome suggests that this zooplankton-associated bacterial community mediates specific biogeochemical processes (through the proliferation of specific taxa) that are generally underrepresented in the ambient waters.


Assuntos
Bactérias/genética , Bactérias/metabolismo , Metagenoma , Zooplâncton/microbiologia , Animais , Oceano Atlântico , Bactérias/classificação , Bactérias/isolamento & purificação , Metagenômica , Microbiota/genética , Filogenia , RNA Ribossômico 16S/genética , Água do Mar/microbiologia
17.
Nat Commun ; 8(1): 1608, 2017 11 20.
Artigo em Inglês | MEDLINE | ID: mdl-29151571

RESUMO

The gut microbiota impacts many aspects of its host's biology, and is increasingly considered as a key factor mediating performance of host individuals in continuously changing environments. Here we use gut microbiota transplants to show that both host genotype and gut microbiota mediate tolerance to toxic cyanobacteria in the freshwater crustacean Daphnia magna. Interclonal variation in tolerance to cyanobacteria disappears when Daphnia are made germ-free and inoculated with an identical microbial inoculum. Instead, variation in tolerance among recipient Daphnia mirrors that of the microbiota donors. Metagenetic analyses point to host genotype and external microbial source as important determinants of gut microbiota assembly, and reveal strong differences in gut microbiota composition between tolerant and susceptible genotypes. Together, these results show that both environmentally and host genotype-induced variations in gut microbiota structure mediate Daphnia tolerance to toxic cyanobacteria, pointing to the gut microbiota as a driver of adaptation and acclimatization to cyanobacterial harmful algal blooms in zooplankton.


Assuntos
Cianobactérias/fisiologia , Daphnia/genética , Daphnia/microbiologia , Microbioma Gastrointestinal , Zooplâncton/genética , Zooplâncton/microbiologia , Animais , Cadeia Alimentar , Água Doce/análise , Genótipo , Proliferação Nociva de Algas
18.
World J Microbiol Biotechnol ; 33(11): 201, 2017 Oct 27.
Artigo em Inglês | MEDLINE | ID: mdl-29080074

RESUMO

N-Acetyl-D-glucosamine (GlcNAc) is a monosaccharide with great application potential in the food, cosmetic, pharmaceutical, and biomaterial areas. GlcNAc is currently produced by chemical hydrolysis of chitin, but the current processes are environmentally unfriendly, have low yield and high cost. This study demonstrates the potential to produce GlcNAc from α-chitin using chitinases of ten marine-derived Aeromonas isolates as a sustainable alternative to the current chemical process. The isolates were characterized as Aeromonas caviae by multilocus sequence analysis (MLSA) using six housekeeping genes (gltA, groL, gyrB, metG, ppsA, and recA), not presented the virulence genes verified (alt, act, ast, ahh1, aer, aerA, hlyA, ascV and ascFG), but showed hemolytic activity on blood agar. GlcNAc was produced at 37 °C, pH 5.0, 2% (w/v) colloidal chitin and crude chitinase extracts (0.5 U mL-1) by all the isolates with yields from 14 to 85% at 6 h, 17-89% at 12 h and 19-93% after 24 h. The highest yield of GlcNAc was observed by A. caviae CH129 (93%). This study demonstrates one of the most efficient chitin enzymatic hydrolysis procedures and A. caviae isolates with great potential for chitinases expression and GlcNAc production.


Assuntos
Acetilglucosamina/biossíntese , Aeromonas caviae/isolamento & purificação , Quitina/metabolismo , Quitinases/metabolismo , Aeromonas caviae/enzimologia , Aeromonas caviae/metabolismo , Animais , Proteínas de Bactérias/metabolismo , Água do Mar/microbiologia , Zooplâncton/microbiologia
19.
Mar Pollut Bull ; 125(1-2): 39-44, 2017 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-28781188

RESUMO

Vibrio parahaemolyticus and V. vulnificus are the most common pathogens causing seafood-borne illnesses in Korea. This study determines the abundance and antimicrobial resistance of pathogenic Vibrio species in seawater and zooplankton samples from the Geoje Island coast in Korea, which is an important area for coastal fisheries, the fishing industry, and tourism. The two Vibrio species were detected more in mesozooplankton samples than in seawater samples. V. parahaemolyticus isolates showed greater resistance than those of V. vulnificus for antimicrobials. Of V. parahaemolyticus isolates, 93.3% exhibited resistance to three or more antimicrobial agents. Conversely, more than 80% of V. vulnificus isolates showed susceptibility to all antimicrobials examined, with the exception of rifampicin. Our findings show that strong antimicrobial resistance of V. parahaemolyticus in the surveyed area was exposed to conventionally used antibiotics, therefore necessitating proper surveillance programs for the monitoring of antimicrobial resistance patterns in seawater bodies and aquatic animals.


Assuntos
Antibacterianos , Vibrio parahaemolyticus/isolamento & purificação , Vibrio vulnificus/isolamento & purificação , Zooplâncton/microbiologia , Animais , Anti-Infecciosos , Testes de Sensibilidade Microbiana , República da Coreia , Alimentos Marinhos , Água do Mar , Vibrio parahaemolyticus/patogenicidade
20.
Sci Rep ; 6: 35039, 2016 10 13.
Artigo em Inglês | MEDLINE | ID: mdl-27733762

RESUMO

Parasites are rarely included in food web studies, although they can strongly alter trophic interactions. In aquatic ecosystems, poorly grazed cyanobacteria often dominate phytoplankton communities, leading to the decoupling of primary and secondary production. Here, we addressed the interface between predator-prey and host-parasite interactions by conducting a life-table experiment, in which four Daphnia galeata genotypes were maintained on quantitatively comparable diets consisting of healthy cyanobacteria or cyanobacteria infected by a fungal (chytrid) parasite. In four out of five fitness parameters, at least one Daphnia genotype performed better on parasitised cyanobacteria than in the absence of infection. Further treatments consisting of purified chytrid zoospores and heterotrophic bacteria suspensions established the causes of improved fitness. First, Daphnia feed on chytrid zoospores which trophically upgrade cyanobacterial carbon. Second, an increase in heterotrophic bacterial biomass, promoted by cyanobacterial decay, provides an additional food source for Daphnia. In addition, chytrid infection induces fragmentation of cyanobacterial filaments, which could render cyanobacteria more edible. Our results demonstrate that chytrid parasitism can sustain zooplankton under cyanobacterial bloom conditions, and exemplify the potential of parasites to alter interactions between trophic levels.


Assuntos
Daphnia/fisiologia , Zooplâncton/microbiologia , Animais , Comportamento Animal , Cianobactérias/fisiologia , Daphnia/genética , Comportamento Alimentar , Cadeia Alimentar , Fungos/fisiologia , Genótipo , Interações Hospedeiro-Parasita
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