Development and characterization of nuclear microsatellite markers for Eremanthus erythropappus and their transferability across related species
Biol. Res
; 53: 30, 2020. tab
Article
in En
| LILACS
| ID: biblio-1124215
Responsible library:
CL1.1
ABSTRACT
BACKGROUND:
We developed simple sequence repeats (SSR) for Eremanthus erythropappus (DC.) MacLeish, an endangered tree species endemic to the Brazilian Savanna and Atlantic Forest biomes, and tested their transferability to two closely related Eremanthus species.RESULTS:
Using a genomic library enriched with tandem repeat motifs, we identified 16 primer pairs, and characterized them in two populations. Nine primers amplified the expected size fragments and seven SSRs were polymorphic, providing a total of 38 alleles and an average of 4.22 alleles per marker. The polymorphic information content (PIC) ranged from 0.44 to 0.94 with an average of 0.65. The average observed heterozygosity across all loci varied from 0.61 to 1.00. The observed ( HO ) and expected ( HE ) heterozygosity within the two populations varied from 0.65 to 1.00 and from 0.31 to 1.00, respectively.CONCLUSIONS:
These newly developed SSR markers are a powerful tool for population genetic analyses and may be useful in studies on species ecology, evolution, and taxonomy.Key words
Full text:
1
Collection:
01-internacional
Database:
LILACS
Main subject:
Endangered Species
/
Microsatellite Repeats
/
Asteraceae
Country/Region as subject:
America do sul
/
Brasil
Language:
En
Journal:
Biol. Res
Journal subject:
BIOLOGIA
Year:
2020
Document type:
Article
Affiliation country:
Brazil