AntiVPP 1.0: A portable tool for prediction of antiviral peptides.
Comput Biol Med
; 107: 127-130, 2019 04.
Article
in En
| MEDLINE
| ID: mdl-30802694
Viruses are worldwide pathogens with a high impact on the human population. Despite the constant efforts to fight viral infections, there is a need to discover and design new drug candidates. Antiviral peptides are molecules with confirmed activity and constitute excellent alternatives for the treatment of viral infections. In the present study, we developed AntiVPP 1.0, an accurate bioinformatic tool that uses the Random Forest algorithm for antiviral peptide predictions. The model of AntiVPP 1.0 for antiviral peptide predictions uses several features of 1088 peptides for training and validation. During the validation of the model we achieved the TPRâ¯=â¯0.87, SPCâ¯=â¯0.97, ACCâ¯=â¯0.93 and MCCâ¯=â¯0.87 performance measures, which were indicative of a robust model. AntiVPP 1.0 is a fast, accurate and intuitive software focused on the assessment of antiviral peptides candidates. AntiVPP 1.0 is available at https://github.com/bio-coding/AntiVPP.
Key words
Full text:
1
Collection:
01-internacional
Database:
MEDLINE
Main subject:
Antiviral Agents
/
Peptides
/
Software
/
Machine Learning
Type of study:
Prognostic_studies
/
Risk_factors_studies
Language:
En
Journal:
Comput Biol Med
Year:
2019
Document type:
Article
Affiliation country:
Chile
Country of publication:
United States