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LigAdvisor: a versatile and user-friendly web-platform for drug design.
Pinzi, Luca; Tinivella, Annachiara; Gagliardelli, Luca; Beneventano, Domenico; Rastelli, Giulio.
Affiliation
  • Pinzi L; Department of Life Sciences, University of Modena and Reggio Emilia, Modena 41125, Italy.
  • Tinivella A; Department of Life Sciences, University of Modena and Reggio Emilia, Modena 41125, Italy.
  • Gagliardelli L; Clinical and Experimental Medicine, PhD Program, University of Modena and Reggio Emilia, Modena 41125, Italy.
  • Beneventano D; Department of Engineering "Enzo Ferrari", University of Modena and Reggio Emilia, Modena 41125, Italy.
  • Rastelli G; Department of Engineering "Enzo Ferrari", University of Modena and Reggio Emilia, Modena 41125, Italy.
Nucleic Acids Res ; 49(W1): W326-W335, 2021 07 02.
Article in En | MEDLINE | ID: mdl-34023895
Although several tools facilitating in silico drug design are available, their results are usually difficult to integrate with publicly available information or require further processing to be fully exploited. The rational design of multi-target ligands (polypharmacology) and the repositioning of known drugs towards unmet therapeutic needs (drug repurposing) have raised increasing attention in drug discovery, although they usually require careful planning of tailored drug design strategies. Computational tools and data-driven approaches can help to reveal novel valuable opportunities in these contexts, as they enable to efficiently mine publicly available chemical, biological, clinical, and disease-related data. Based on these premises, we developed LigAdvisor, a data-driven webserver which integrates information reported in DrugBank, Protein Data Bank, UniProt, Clinical Trials and Therapeutic Target Database into an intuitive platform, to facilitate drug discovery tasks as drug repurposing, polypharmacology, target fishing and profiling. As designed, LigAdvisor enables easy integration of similarity estimation results with clinical data, thereby allowing a more efficient exploitation of information in different drug discovery contexts. Users can also develop customizable drug design tasks on their own molecules, by means of ligand- and target-based search modes, and download their results. LigAdvisor is publicly available at https://ligadvisor.unimore.it/.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Drug Design Language: En Journal: Nucleic Acids Res Year: 2021 Document type: Article Affiliation country: Italy Country of publication: United kingdom

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Drug Design Language: En Journal: Nucleic Acids Res Year: 2021 Document type: Article Affiliation country: Italy Country of publication: United kingdom