VC@Scale: Scalable and high-performance variant calling on cluster environments.

Ahmad, Tanveer; Al Ars, Zaid; Hofstee, H Peter

Ahmad, Tanveer; Al Ars, Zaid; Hofstee, H Peter.

Affiliation

Ahmad T; Faculty of Electrical Engineering, Mathematics and Computer Science, Quantum & Computer Engineering Department, Mekelweg 4, 2628 CD Delft, Netherlands.
Al Ars Z; Faculty of Electrical Engineering, Mathematics and Computer Science, Quantum & Computer Engineering Department, Mekelweg 4, 2628 CD Delft, Netherlands.
Hofstee HP; Faculty of Electrical Engineering, Mathematics and Computer Science, Quantum & Computer Engineering Department, Mekelweg 4, 2628 CD Delft, Netherlands.

Gigascience ; 10(9)2021 09 07.

Article in En | MEDLINE | ID: mdl-34494101

Subject(s)

High-Throughput Nucleotide Sequencing; Software; Algorithms; Big Data; High-Throughput Nucleotide Sequencing/methods; Workflow

Key words

Apache Arrow; Apache Spark; BWA-MEM; DeepVariant; MarkDuplicate; sorting; whole-genome sequencing

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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / High-Throughput Nucleotide Sequencing Language: En Journal: Gigascience Year: 2021 Document type: Article Affiliation country: Netherlands

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