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Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Hejun Liu; Nicholas C. Wu; Meng Yuan; Sandhya Bangaru; Jonathan L. Torres; Tom G. Caniels; Jelle van Schooten; Xueyong Zhu; Chang-Chun D. Lee; Philip J.M. Brouwer; Marit J. van Gils; Rogier W. Sanders; Andrew B. Ward; Ian A. Wilson.
Affiliation
  • Hejun Liu; The Scripps Research Institute
  • Nicholas C. Wu; The Scripps Research Institute
  • Meng Yuan; The Scripps Research Institute
  • Sandhya Bangaru; The Scripps Research Institute
  • Jonathan L. Torres; The Scripps Research Institute
  • Tom G. Caniels; Amsterdam UMC
  • Jelle van Schooten; Amsterdam UMC
  • Xueyong Zhu; The Scripps Research Institute
  • Chang-Chun D. Lee; The Scripps Research Institute
  • Philip J.M. Brouwer; Amsterdam UMC
  • Marit J. van Gils; Amsterdam UMC
  • Rogier W. Sanders; Amsterdam UMC
  • Andrew B. Ward; The Scripps Research Institute
  • Ian A. Wilson; The Scripps Research Institute
Preprint in English | bioRxiv | ID: ppbiorxiv-233536
Journal article
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ABSTRACT
Most antibodies isolated from COVID-19 patients are specific to SARS-CoV-2. COVA1-16 is a relatively rare antibody that also cross-neutralizes SARS-CoV. Here we determined a crystal structure of COVA1-16 Fab with the SARS-CoV-2 RBD, and a negative-stain EM reconstruction with the spike glycoprotein trimer, to elucidate the structural basis of its cross-reactivity. COVA1-16 binds a highly conserved epitope on the SARS-CoV-2 RBD, mainly through a long CDR H3, and competes with ACE2 binding due to steric hindrance rather than epitope overlap. COVA1-16 binds to a flexible up conformation of the RBD on the spike and relies on antibody avidity for neutralization. These findings, along with structural and functional rationale for the epitope conservation, provide a blueprint for development of more universal SARS-like coronavirus vaccines and therapies.
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Full text: Available Collection: Preprints Database: bioRxiv Type of study: Rct Language: English Year: 2020 Document type: Preprint
Full text: Available Collection: Preprints Database: bioRxiv Type of study: Rct Language: English Year: 2020 Document type: Preprint
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