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Highly divergent white-tailed deer SARS-CoV-2 with potential deer-to-human transmission
Brad Pickering; Oliver Lung; Finlay Maguire; Peter Kruczkiewicz; Jonathon D Kotwa; Tore Buchanan; Marianne Gagnier; Jennifer Guthrie; Claire Jardine; Alex Marchand-Austin; Ariane Massé; Heather McClinchey; Kuganya Nirmalarajah; Patryk Aftanas; Juliette Blais-Savoie; Hsien-Yao Chee; Emily Chien; Winfield Yim; Andra Banete; Bryan D. Griffin; Lily Yip; Melissa Goolia; Matthew Suderman; Mathieu Pinette; Greg Smith; Daniel Sullivan; Josip Rudar; Elizabeth Adey; Michelle Nebroski; Guillaume Goyette; Andrés Finzi; Geneviève Laroche; Ardeshir Ariana; Brett Vahkal; Marceline Côté; Allison McGeer; Larissa Nituch; Samira Mubareka; Jeff Bowman.
Affiliation
  • Brad Pickering; Canadian Food Inspection Agency
  • Oliver Lung; Canadian Food Inspection Agency
  • Finlay Maguire; Dalhousie University
  • Peter Kruczkiewicz; Canadian Food Inspection Agency
  • Jonathon D Kotwa; Sunnybrook Research Institute
  • Tore Buchanan; Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry
  • Marianne Gagnier; Quebec Ministere des Forets, de la Faune et des Parcs
  • Jennifer Guthrie; Public Health Ontario
  • Claire Jardine; University of Guelph
  • Alex Marchand-Austin; Public Health Ontario
  • Ariane Massé; Quebec Ministere des Forets, de la Faune et des Parcs
  • Heather McClinchey; Ontario Ministry of Health
  • Kuganya Nirmalarajah; University of Toronto
  • Patryk Aftanas; Sunnybrook Research Institute
  • Juliette Blais-Savoie; Sunnybrook Research Institute
  • Hsien-Yao Chee; Sunnybrook Research Institute
  • Emily Chien; University of Toronto
  • Winfield Yim; University of Toronto
  • Andra Banete; Sunnybrook Research Institute
  • Bryan D. Griffin; Sunnybrook Research Institute
  • Lily Yip; Sunnybrook Research Institute
  • Melissa Goolia; Canadian Food Inspection Agency
  • Matthew Suderman; Canadian Food Inspection Agency
  • Mathieu Pinette; Canadian Food Inspection Agency
  • Greg Smith; Canadian Food Inspection Agency
  • Daniel Sullivan; Canadian Food Inspection Agency
  • Josip Rudar; Canadian Food Inspection Agency
  • Elizabeth Adey; Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry
  • Michelle Nebroski; Canadian Food Inspection Agency
  • Guillaume Goyette; CRCHUM
  • Andrés Finzi; Université de Montréal
  • Geneviève Laroche; University of Ottawa
  • Ardeshir Ariana; University of Ottawa
  • Brett Vahkal; University of Ottawa
  • Marceline Côté; University of Ottawa
  • Allison McGeer; Mount Sinai Hospital
  • Larissa Nituch; Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry
  • Samira Mubareka; Sunnybrook Research Institute and University of Toronto
  • Jeff Bowman; Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry
Preprint in English | bioRxiv | ID: ppbiorxiv-481551
ABSTRACT
Wildlife reservoirs of SARS-CoV-2 may enable viral adaptation and spillback from animals to humans. In North America, there is evidence of unsustained spillover of SARS-CoV-2 from humans to white-tailed deer (Odocoileus virginianus), but no evidence of transmission from deer to humans. Through a biosurveillance program in Ontario, Canada we identified a new and highly divergent lineage of SARS-CoV-2 in white-tailed deer. This lineage is the most divergent SARS-CoV-2 lineage identified to date, with 76 consensus mutations (including 37 previously associated with non-human animal hosts) and signatures of considerable evolution and transmission within wildlife. Phylogenetic analysis also revealed an epidemiologically linked human case. Together, our findings represent the first clear evidence of sustained evolution of SARS-CoV-2 in white-tailed deer and of deer-to-human transmission.
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Full text: Available Collection: Preprints Database: bioRxiv Language: English Year: 2022 Document type: Preprint
Full text: Available Collection: Preprints Database: bioRxiv Language: English Year: 2022 Document type: Preprint
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