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Comparative pathogenicity of SARS-CoV-2 Omicron subvariants including BA.1, BA.2, and BA.5
Tomokazu Tamura; Daichi Yamasoba; Yoshitaka Oda; Jumpei Ito; Tomoko Kamasaki; Naganori Nao; Rina Hashimoto; Yoichiro Fujioka; Rigel Suzuki; Lei Wang; Hayato Ito; Izumi Kimura; Isao Yokota; Mai Kishimoto; Masumi Tsuda; Hirofumi Sawa; Kumiko Yoshimatsu; Yusuke Ohba; Yuki Yamamoto; Tetsuharu Nagamoto; Jun Kanamune; - The Genotype to Phenotype Japan (G2P-Japan) Consortium; Keita Matsuno; Kazuo Takayama; Shinya Tanaka; Kei Sato; Takasuke Fukuhara.
Affiliation
  • Tomokazu Tamura; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Daichi Yamasoba; Division of Systems Virology, Department of Microbiology and Immunology, International Research Center for Infectious Diseases, The Institute of Medical Science
  • Yoshitaka Oda; Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Jumpei Ito; Division of Systems Virology, Department of Microbiology and Immunology, International Research Center for Infectious Diseases, The Institute of Medical Science
  • Tomoko Kamasaki; Department of Cell Physiology, Faculty of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan.
  • Naganori Nao; Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
  • Rina Hashimoto; Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
  • Yoichiro Fujioka; Department of Cell Physiology, Faculty of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan.
  • Rigel Suzuki; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Lei Wang; Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Hayato Ito; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Izumi Kimura; Division of Systems Virology, Department of Microbiology and Immunology, International Research Center for Infectious Diseases, The Institute of Medical Science
  • Isao Yokota; Department of Biostatistics, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Mai Kishimoto; Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
  • Masumi Tsuda; Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Hirofumi Sawa; Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
  • Kumiko Yoshimatsu; Institute for Genetic Medicine, Hokkaido University, Sapporo, Japan.
  • Yusuke Ohba; Department of Cell Physiology, Faculty of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan.
  • Yuki Yamamoto; HiLung Inc., Kyoto, Japan
  • Tetsuharu Nagamoto; HiLung Inc., Kyoto, Japan
  • Jun Kanamune; HiLung Inc., Kyoto, Japan
  • - The Genotype to Phenotype Japan (G2P-Japan) Consortium; -
  • Keita Matsuno; Division of Risk Analysis and Management, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
  • Kazuo Takayama; Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
  • Shinya Tanaka; Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Kei Sato; Division of Systems Virology, Department of Microbiology and Immunology, International Research Center for Infectious Diseases, The Institute of Medical Science
  • Takasuke Fukuhara; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
Preprint in English | bioRxiv | ID: ppbiorxiv-502758
ABSTRACT
Unremitting emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants imposes us to continuous control measurement. Given the rapid spread, new Omicron subvariant named BA.5 is urgently required for characterization. Here we analyzed BA.5 with the other Omicron variants BA.1, BA.2, and ancestral B.1.1 comprehensively. Although in vitro growth kinetics of BA.5 is comparable among the Omicron subvariants, BA.5 become much more fusogenic than BA.1 and BA.2. The airway-on-a-chip analysis showed that the ability of BA.5 to disrupt the respiratory epithelial and endothelial barriers is enhanced among Omicron subvariants. Furthermore, in our hamster model, in vivo replication of BA.5 is comparable with that of the other Omicrons and less than that of the ancestral B.1.1. Importantly, inflammatory response against BA.5 is strong compared with BA.1 and BA.2. Our data suggest that BA.5 is still low pathogenic compared to ancestral strain but evolved to induce enhanced inflammation when compared to prior Omicron subvariants.
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Full text: Available Collection: Preprints Database: bioRxiv Language: English Year: 2022 Document type: Preprint
Full text: Available Collection: Preprints Database: bioRxiv Language: English Year: 2022 Document type: Preprint
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