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Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data
John Ojal; Samuel PC Brand; Vincent Were; Emelda A Okiro; Ivy Kadzo Kombe; Caroline Mburu; Rabia Aziza; Morris Ogero; Ambrose Agweyu; George M Warimwe; Sophie Uyoga; Ifedayo M. O Adetifa; John Anthony Scott; Edward Otieno; Lynette I Ochola-Oyier; Charles Nyaigoti Agoti; Kadondi Kasera; Patrick Amoth; Mercy Mwangangi; Rashid Aman; Wangari Ng'ang'a; Benjamin Tsofa; Philip Bejon; Edwine Barasa; Matt J Keeling; D James Nokes.
Affiliation
  • John Ojal; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya and London School of Hygiene and Tropical Medicine
  • Samuel PC Brand; The Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, UK.
  • Vincent Were; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Emelda A Okiro; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Ivy Kadzo Kombe; KEMRI-Wellcome Trust Research Programme
  • Caroline Mburu; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Rabia Aziza; The Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, UK.
  • Morris Ogero; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Ambrose Agweyu; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • George M Warimwe; KEMRI-Wellcome Trust Research Programme
  • Sophie Uyoga; KEMRI Wellcome Trust Research Programme
  • Ifedayo M. O Adetifa; KEMRI-Wellcome Trust Research Programme
  • John Anthony Scott; London School of Hygiene & Tropical Medicine
  • Edward Otieno; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Lynette I Ochola-Oyier; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Charles Nyaigoti Agoti; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Kadondi Kasera; Ministry of Health, Government of Kenya, Kenya
  • Patrick Amoth; Ministry of Health, Government of Kenya, Kenya
  • Mercy Mwangangi; Ministry of Health, Government of Kenya, Kenya
  • Rashid Aman; Ministry of Health, Government of Kenya, Kenya
  • Wangari Ng'ang'a; Presidential Policy & Strategy Unit, The Presidency, Government of Kenya
  • Benjamin Tsofa; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Philip Bejon; Kenya Medical Research Institute -Wellcome Trust Research Programme, Kenya
  • Edwine Barasa; KEMRI-Wellcome Trust Research Programme
  • Matt J Keeling; The Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, UK
  • D James Nokes; KEMRI-Wellcome Trust Research Programme, Kenya and School of Life Sciences, University of Warwick, UK
Preprint in English | medRxiv | ID: ppmedrxiv-20186817
ABSTRACT
Policy makers in Africa need robust estimates of the current and future spread of SARS-CoV-2. Data suitable for this purpose are scant. We used national surveillance PCR test, serological survey and mobility data to develop and fit a county-specific transmission model for Kenya. We estimate that the SARS-CoV-2 pandemic peaked before the end of July 2020 in the major urban counties, with 34 - 41% of residents infected, and will peak elsewhere in the country within 2-3 months. Despite this penetration, reported severe cases and deaths are low. Our analysis suggests the COVID-19 disease burden in Kenya may be far less than initially feared. A similar scenario across sub-Saharan Africa would have implications for balancing the consequences of restrictions with those of COVID-19.
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Full text: Available Collection: Preprints Database: medRxiv Type of study: Observational study Language: English Year: 2020 Document type: Preprint
Full text: Available Collection: Preprints Database: medRxiv Type of study: Observational study Language: English Year: 2020 Document type: Preprint
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