Detailed docking of "phospholipid" biological metabolizing pathway / 中南大学学报(医学版)
Journal of Central South University(Medical Sciences)
; (12): 541-551, 2014.
Article
in Zh
| WPRIM
| ID: wpr-815404
Responsible library:
WPRO
ABSTRACT
OBJECTIVE@#To construct protein functional network according to the physiological process in vivo and functionally based distinct families, to understand biological functions, and to make wise decisions.@*METHODS@#We described here a very effective strategy combining with multiple-docking and protein-ligand binding-affinity fingerprint method to generate bio-functional network and pathway and reveal the protein "unknown" functions and their relationship.@*RESULTS@#Totally 27 sets of proteins and 28 bio-active molecules were used to reconstruct the possible phospholipids metabolic network by computational simulation strategy. The protein-ligand network reconstruction and pathway based drug design showed that the direct interaction investigation might be effective in complex biological system study.@*CONCLUSION@#Even for weak and moderate interactions in the real biology system, the relationship between each other can be achieved by fingerprint analysis based on multiple-docking data. The results of these calculations give valuable insight into the pathway and the function relationship among these proteins. This method can be a very useful tool for protein classification, target selection, and inhibitor design.
Full text:
1
Database:
WPRIM
Main subject:
Phospholipids
/
Proteins
/
Chemistry
/
Molecular Docking Simulation
/
Ligands
/
Metabolism
Language:
Zh
Journal:
Journal of Central South University(Medical Sciences)
Year:
2014
Document type:
Article