Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0.
NAR Genom Bioinform
; 3(4): lqab116, 2021 Dec.
Article
en En
| MEDLINE
| ID: mdl-34988439
ABSTRACT
Glimma 1.0 introduced intuitive, point-and-click interactive graphics for differential gene expression analysis. Here, we present a major update to Glimma that brings improved interactivity and reproducibility using high-level visualization frameworks for R and JavaScript. Glimma 2.0 plots are now readily embeddable in R Markdown, thus allowing users to create reproducible reports containing interactive graphics. The revamped multidimensional scaling plot features dashboard-style controls allowing the user to dynamically change the colour, shape and size of sample points according to different experimental conditions. Interactivity was enhanced in the MA-style plot for comparing differences to average expression, which now supports selecting multiple genes, export options to PNG, SVG or CSV formats and includes a new volcano plot function. Feature-rich and user-friendly, Glimma makes exploring data for gene expression analysis more accessible and intuitive and is available on Bioconductor and GitHub.
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1
Colección:
01-internacional
Base de datos:
MEDLINE
Idioma:
En
Revista:
NAR Genom Bioinform
Año:
2021
Tipo del documento:
Article
País de afiliación:
Australia