A streamlined pipeline based on HmmUFOtu for microbial community profiling using 16S rRNA amplicon sequencing.

Kim, Hyeonwoo; Kim, Jiwon; Choi, Ji Won; Ahn, Kwang-Sung; Park, Dong-Il; Kim, Sangsoo

Kim, Hyeonwoo; Kim, Jiwon; Choi, Ji Won; Ahn, Kwang-Sung; Park, Dong-Il; Kim, Sangsoo.

Afiliación

Kim H; Department of Bioinformatics, Soongsil University, Seoul 06978, Korea.
Kim J; Department of Bioinformatics, Soongsil University, Seoul 06978, Korea.
Choi JW; Department of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea.
Ahn KS; Functional Genome Institute, PDXen Biosystems, Co., Daejeon 34027, Korea.
Park DI; Functional Genome Institute, PDXen Biosystems, Co., Daejeon 34027, Korea.
Kim S; Division of Gastroenterology, Department of Internal Medicine and Inflammatory Bowel Disease Center, Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine, Seoul 03181, Korea.

Genomics Inform ; 21(3): e40, 2023 Sep.

Article en En | MEDLINE | ID: mdl-37813636

Palabras clave

DADA2; HmmUFOtu; amplicon sequencing; metagenomics

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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Genomics Inform Año: 2023 Tipo del documento: Article Pais de publicación: