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NanoConstruct: A web application builder of ellipsoidal nanoparticles for the investigation of their crystal growth, stability, and the calculation of atomistic descriptors.
Kolokathis, Panagiotis D; Zouraris, Dimitrios; Voyiatzis, Evangelos; Sidiropoulos, Nikolaos K; Tsoumanis, Andreas; Melagraki, Georgia; Tämm, Kaido; Lynch, Iseult; Afantitis, Antreas.
Afiliación
  • Kolokathis PD; NovaMechanics MIKE, Piraeus 18545, Greece.
  • Zouraris D; Entelos Institute, Larnaca 6059, Cyprus.
  • Voyiatzis E; NovaMechanics Ltd, Nicosia 1070, Cyprus.
  • Sidiropoulos NK; Entelos Institute, Larnaca 6059, Cyprus.
  • Tsoumanis A; NovaMechanics Ltd, Nicosia 1070, Cyprus.
  • Melagraki G; NovaMechanics MIKE, Piraeus 18545, Greece.
  • Tämm K; Entelos Institute, Larnaca 6059, Cyprus.
  • Lynch I; NovaMechanics MIKE, Piraeus 18545, Greece.
  • Afantitis A; NovaMechanics Ltd, Nicosia 1070, Cyprus.
Comput Struct Biotechnol J ; 25: 81-90, 2024 Dec.
Article en En | MEDLINE | ID: mdl-38883847
ABSTRACT
NanoConstruct is a state-of-the-art computational tool that enables a) the digital construction of ellipsoidal neutral energy minimized nanoparticles (NPs) in vacuum through its graphical user-friendly interface, and b) the calculation of NPs atomistic descriptors. It allows the user to select NP's shape and size by inserting its ellipsoidal axes and rotation angle while the NP material is selected by uploading its Crystallography Information File (CIF). To investigate the stability of materials not yet synthesised, NanoConstruct allows the substitution of the chemical elements of an already synthesized material with chemical elements that belong into the same group and neighbouring rows of the periodic table. The process is divided into three stages 1) digital construction of the unit cell, 2) digital construction of NP using geometry rules and keeping its stoichiometry and 3) energy minimization of the geometrically constructed NP and calculation of its atomistic descriptors. In this study, NanoConstruct was applied for the investigation of the crystal growth of Zirconia (ZrO2) NPs when in the rutile form. The most stable configuration and the crystal growth route were identified, showing a preferential direction for the crystal growth of ZrO2 in its rutile form. NanoConstruct is freely available through the Enalos Cloud Platform (https//enaloscloud.novamechanics.com/riskgone/nanoconstruct/).
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Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Comput Struct Biotechnol J Año: 2024 Tipo del documento: Article País de afiliación: Grecia

Texto completo: 1 Colección: 01-internacional Base de datos: MEDLINE Idioma: En Revista: Comput Struct Biotechnol J Año: 2024 Tipo del documento: Article País de afiliación: Grecia